##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139767_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8896047 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53451167692796 34.0 31.0 34.0 31.0 34.0 2 32.725290907298486 34.0 31.0 34.0 31.0 34.0 3 32.815213206494974 34.0 31.0 34.0 31.0 34.0 4 36.22666786719989 37.0 37.0 37.0 35.0 37.0 5 36.07563527935498 37.0 35.0 37.0 35.0 37.0 6 36.10152666684427 37.0 36.0 37.0 35.0 37.0 7 36.1172855763914 37.0 36.0 37.0 35.0 37.0 8 36.113635415820085 37.0 36.0 37.0 35.0 37.0 9 37.98016006435218 39.0 38.0 39.0 35.0 39.0 10-11 37.86919735248701 39.0 38.0 39.0 35.0 39.0 12-13 37.89655017560047 39.0 38.0 39.0 35.0 39.0 14-15 39.23169391978257 40.0 39.0 41.0 36.0 41.0 16-17 39.19870185038366 40.0 39.0 41.0 36.0 41.0 18-19 39.22925823121213 40.0 39.0 41.0 36.0 41.0 20-21 39.26902223185548 40.0 39.0 41.0 36.0 41.0 22-23 39.22528373864748 40.0 39.0 41.0 36.0 41.0 24-25 39.20961406387757 40.0 39.0 41.0 36.0 41.0 26-27 39.1009709227964 40.0 39.0 41.0 36.0 41.0 28-29 39.02120288727028 40.0 39.0 41.0 35.5 41.0 30-31 38.90400233949535 40.0 38.0 41.0 35.0 41.0 32-33 38.83629195443134 40.0 38.0 41.0 35.0 41.0 34-35 38.775712595637046 40.0 38.0 41.0 35.0 41.0 36-37 38.698113233499356 40.0 38.0 41.0 35.0 41.0 38-39 38.59759561352862 40.0 38.0 41.0 35.0 41.0 40-41 38.60133558293211 40.0 38.0 41.0 35.0 41.0 42-43 38.54911308614517 40.0 38.0 41.0 34.5 41.0 44-45 38.51264433989493 40.0 38.0 41.0 34.0 41.0 46-47 38.405414484555884 40.0 38.0 41.0 34.0 41.0 48-49 38.3867503685273 40.0 38.0 41.0 34.0 41.0 50-51 38.28160316705531 40.0 38.0 41.0 34.0 41.0 52-53 38.10119850300492 40.0 37.0 41.0 33.5 41.0 54-55 37.94653167449431 40.0 37.0 41.0 33.0 41.0 56-57 37.724057798549104 39.0 36.0 41.0 33.0 41.0 58-59 37.48376309596286 39.0 36.0 41.0 33.0 41.0 60-61 37.30178865253926 39.0 35.0 40.5 32.5 41.0 62-63 37.11951868734418 39.0 35.0 40.0 32.0 41.0 64-65 36.84936553748852 38.0 35.0 40.0 32.0 41.0 66-67 36.63749485111709 37.5 35.0 40.0 32.0 41.0 68-69 36.35420339684911 37.0 35.0 39.5 32.0 41.0 70-71 36.01529430763911 36.5 35.0 39.0 31.0 41.0 72-73 35.752178769627804 36.0 35.0 39.0 31.0 40.5 74-75 35.40093173867737 35.5 34.0 38.5 31.0 40.0 76-77 33.4390990108269 34.5 32.0 36.0 28.0 39.0 78-79 34.57004885259239 35.0 34.0 37.0 30.5 39.0 80-81 34.558719653967806 35.0 34.0 36.5 31.0 39.0 82-83 34.340829920869425 35.0 34.0 36.0 31.0 37.5 84-85 34.09248978684852 35.0 34.0 36.0 30.5 37.0 86-87 33.90281500053902 35.0 34.0 35.0 30.0 37.0 88-89 33.71982049004977 35.0 34.0 35.0 30.0 36.0 90-91 33.686369345832205 35.0 34.0 35.0 30.0 36.0 92-93 33.623499461315404 35.0 34.0 35.0 30.0 36.0 94-95 33.54951563679894 35.0 34.0 35.0 30.0 36.0 96-97 33.56233276559584 35.0 34.0 35.0 30.0 35.0 98-99 33.62954566700071 35.0 34.0 35.0 31.0 35.0 100-101 32.35442202677988 34.0 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 23.0 20 47.0 21 163.0 22 719.0 23 2242.0 24 5979.0 25 12861.0 26 23764.0 27 39328.0 28 58997.0 29 82961.0 30 109969.0 31 145243.0 32 194174.0 33 268565.0 34 405135.0 35 648924.0 36 1212092.0 37 2279290.0 38 2472332.0 39 916476.0 40 16758.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.57713566486328 19.56654455625066 12.952561963757612 24.90375781512845 2 15.419965437867017 20.815001310159566 39.85426709021935 23.910766161754065 3 18.608404944561137 25.590784901023905 30.22062571978909 25.58018443462587 4 12.901399324910376 17.547957487429187 36.82438766889044 32.72625551877 5 13.399416639575973 37.6378646508493 35.296340710545046 13.666377999029681 6 31.136416085816442 36.64922401737138 18.090018099123302 14.124341797688874 7 27.29483106372977 32.004642061805654 22.037597148486288 18.66292972597829 8 25.651025478521795 35.58430816760982 20.898979568666604 17.865686785201778 9 25.887549187759824 15.937407472605148 20.160321240501645 38.01472209913339 10-11 24.92590623540951 25.972838440774137 28.25700204412291 20.844253279693444 12-13 25.66936843211611 23.393405039436107 28.27489999758319 22.662326530864593 14-15 22.681212159090723 24.827891185559064 25.423880852201318 27.06701580314889 16-17 22.718799318098903 28.20687675594844 26.099651512365963 22.974672413586696 18-19 22.830584190933344 27.195118236223347 27.630092332021178 22.34420524082213 20-21 23.314708372160705 26.408609528772875 27.510920049549902 22.765762049516518 22-23 23.07563841747823 26.82572364885986 27.39429074252568 22.70434719113623 24-25 23.024724580235628 27.046834854296964 27.483900111193478 22.44454045427393 26-27 22.97459130812002 27.273275457067104 27.472226997244185 22.279906237568692 28-29 22.782773900978274 27.066078004955465 27.482772201357154 22.668375892709108 30-31 23.28710837069618 26.789080893412194 27.488286129619766 22.435524606271866 32-33 22.815690987627033 27.024945600214036 27.615412798907773 22.543950613251162 34-35 22.91040811715914 26.631156439315923 27.80473370902021 22.65370173450473 36-37 22.709548063737138 27.094916535417994 27.580961593260955 22.614573807583913 38-39 22.656783948367277 26.57015131786596 27.866367493523136 22.906697240243627 40-41 22.790836383854884 26.410570370595472 27.985063546482188 22.81352969906746 42-43 22.973016630203176 26.416955071180205 27.806122315335006 22.80390598328161 44-45 22.618944647218555 26.760187233739703 27.711118443432365 22.90974967560938 46-47 23.196377561585134 26.367565227670852 27.1637801712436 23.27227703950041 48-49 22.89740719714404 26.5507080277846 27.170003628823192 23.381881146248162 50-51 22.72925567990122 26.74831747197388 27.44083572825428 23.081591119870616 52-53 22.903132502171154 26.700949020081815 27.58636969724734 22.809548780499693 54-55 22.744679188106918 26.783115966859366 27.200465245442206 23.27173959959151 56-57 23.12896854949694 27.09103106884325 26.764296815346295 23.015703566313515 58-59 22.641205811493247 27.357210651483406 27.309078636821226 22.692504900202117 60-61 23.089462827596787 27.60247075103277 26.63474980342041 22.673316617950032 62-63 22.798793311155855 27.88121612670553 26.622561418931877 22.69742914320674 64-65 22.79843115113401 27.62670682695787 26.676911533102654 22.897950488805467 66-67 22.927726235038392 27.359246911025124 26.667589428199523 23.045437425736957 68-69 22.94684217865751 27.160217370699357 26.806024208339597 23.086916242303538 70-71 22.9406825245963 26.990067417185813 26.834038106814806 23.23521195140308 72-73 23.011824431965593 26.972997942995786 26.743925404127594 23.27125222091103 74-75 22.88441162284445 27.078521208046414 26.797750849557318 23.23931631955182 76-77 23.1505234771365 26.91504483125374 26.73018559772917 23.204246093880585 78-79 23.070506294013736 26.899939717414366 26.668332093701874 23.361221894870024 80-81 23.11732357165816 26.99969129616317 26.615924651386578 23.26706048079209 82-83 23.09450731504306 26.9602654704357 26.731627499897098 23.21359971462414 84-85 23.15176480123133 26.937747663552752 26.71127217062382 23.1992153645921 86-87 23.092333238264022 26.879142316567663 26.821370363864705 23.207154081303617 88-89 23.096711118942086 26.90269022541676 26.775058320884742 23.22554033475641 90-91 23.159234267025926 26.919892371901565 26.784395347992902 23.136478013079607 92-93 23.18755631258905 26.803008600882176 26.846282477230165 23.163152609298606 94-95 23.131830286844497 26.800131745056362 26.891619655043108 23.17641831305603 96-97 23.149865798493085 26.76112131769178 26.89756539726077 23.191447486554363 98-99 23.38377614786745 27.373404251502258 26.968618481930644 22.27420111869965 100-101 24.213499216141642 29.930241780204785 23.91634631091348 21.93991269274009 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1668.0 1 1526.5 2 2163.0 3 3086.0 4 4083.5 5 6669.5 6 9007.5 7 10826.5 8 12347.5 9 12418.5 10 11008.5 11 9452.5 12 9909.5 13 13101.5 14 20714.5 15 30695.0 16 38387.0 17 42597.5 18 43173.5 19 40495.0 20 36482.5 21 32600.0 22 30493.0 23 32201.0 24 38051.0 25 47341.0 26 58986.0 27 71827.0 28 86721.5 29 104620.0 30 121392.5 31 137891.0 32 154667.5 33 171832.5 34 188402.0 35 202979.0 36 220472.0 37 236992.5 38 252672.0 39 268163.5 40 281364.5 41 295924.5 42 308403.5 43 320920.0 44 336203.0 45 355396.0 46 382248.5 47 407272.0 48 414243.0 49 413370.0 50 413722.5 51 405387.5 52 389374.0 53 370651.0 54 354869.0 55 336897.5 56 313769.5 57 287900.0 58 259561.5 59 228704.0 60 195437.5 61 163452.5 62 132869.0 63 103693.0 64 78810.0 65 59801.5 66 45459.5 67 35068.5 68 26808.0 69 19442.0 70 13943.0 71 10081.0 72 7188.0 73 5117.5 74 3691.5 75 2645.5 76 1856.5 77 1223.0 78 793.5 79 540.5 80 368.0 81 257.5 82 177.5 83 125.5 84 97.0 85 70.5 86 53.5 87 40.0 88 30.0 89 20.0 90 13.5 91 9.5 92 4.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0020683343961649483 3 0.002383080934711788 4 4.8336075562550423E-4 5 3.372284341573285E-5 6 4.0467412098879423E-4 7 0.0 8 5.6204739026221424E-5 9 3.709512775730614E-4 10-11 6.238726031910578E-4 12-13 1.348913736629314E-4 14-15 3.9343317318354995E-5 16-17 3.990536470861721E-4 18-19 0.0 20-21 4.496563360933802E-5 22-23 1.124239037727832E-5 24-25 0.0 26-27 6.750026493853988E-5 28-29 2.4199844794576804E-4 30-31 7.214466764388873E-4 32-33 3.5604231500747745E-4 34-35 9.413253747864297E-4 36-37 1.2535583250204374E-4 38-39 1.2046764161702683E-4 40-41 2.542014590470473E-4 42-43 0.0013388038020863803 44-45 3.347097537945516E-4 46-47 1.2456135127000975E-4 48-49 3.6533653424035813E-4 50-51 0.0 52-53 4.995330584277014E-4 54-55 6.201105663279471E-4 56-57 7.372919218145906E-4 58-59 7.823738311100251E-4 60-61 8.354246374826682E-4 62-63 8.964039411295676E-5 64-65 7.064034369832399E-4 66-67 0.0027117422576311413 68-69 0.0012961036531977568 70-71 3.02342407883155E-4 72-73 0.0 74-75 8.9078984965523E-5 76-77 6.921233319481639E-6 78-79 9.788308257318962E-4 80-81 1.6961720506465666E-4 82-83 1.0718733222949437E-4 84-85 8.090150862532879E-4 86-87 2.4832383239046965E-4 88-89 2.9563232798633E-5 90-91 2.994243043755847E-5 92-93 1.3663018944231201E-4 94-95 7.089646265182053E-4 96-97 1.5682323794193965E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 256.0 20-21 617.0 22-23 1409.0 24-25 3877.0 26-27 4198.0 28-29 9423.0 30-31 22659.0 32-33 27826.0 34-35 37600.0 36-37 55676.0 38-39 62164.0 40-41 63873.0 42-43 71252.0 44-45 84228.0 46-47 82875.0 48-49 76763.0 50-51 68741.0 52-53 61656.0 54-55 71063.0 56-57 79669.0 58-59 86413.0 60-61 93956.0 62-63 92366.0 64-65 94289.0 66-67 99001.0 68-69 83021.0 70-71 75757.0 72-73 70490.0 74-75 73327.0 76-77 71434.0 78-79 75950.0 80-81 78042.0 82-83 75393.0 84-85 75471.0 86-87 79353.0 88-89 84493.0 90-91 91345.0 92-93 95304.0 94-95 106331.0 96-97 164528.0 98-99 756573.0 100-101 5487385.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.38582044257882 #Duplication Level Percentage of deduplicated Percentage of total 1 87.93980033367426 72.4499260004632 2 8.015630588085365 13.207486047280865 3 2.1976504434954522 5.431657045001101 4 0.8631914159737726 2.8445893201596237 5 0.40354252449982686 1.662309098219385 6 0.20731547635314518 1.024791336587875 7 0.12109796416324152 0.6983728592060261 8 0.0712300649212932 0.46946778709751147 9 0.04455422079116773 0.33035724306541403 >10 0.13282311212655695 1.6546702684120733 >50 0.0025510213540734165 0.1370060591893135 >100 5.888478810099912E-4 0.07695663555741608 >500 2.398668085825965E-5 0.012410299760228696 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1240947805244285E-5 0.0 1.1240947805244285E-5 0.0 3 0.0 1.1240947805244285E-5 0.0 2.248189561048857E-5 0.0 4 0.0 6.74456868314657E-5 0.0 4.496379122097714E-5 2.248189561048857E-5 5 0.0 1.2365042585768714E-4 0.0 4.496379122097714E-5 2.248189561048857E-5 6 1.5737326927341998E-4 1.2365042585768714E-4 0.0 4.496379122097714E-5 2.248189561048857E-5 7 1.5737326927341998E-4 1.348913736629314E-4 0.0 4.496379122097714E-5 2.248189561048857E-5 8 1.6861421707866427E-4 1.348913736629314E-4 0.0 4.496379122097714E-5 3.372284341573285E-5 9 1.6861421707866427E-4 2.3605990391012998E-4 0.0 1.0116853024719856E-4 3.372284341573285E-5 10-11 1.7985516488390853E-4 2.3605990391012998E-4 0.0 1.9671658659177498E-4 3.372284341573285E-5 12-13 2.0233706049439711E-4 2.6978274732586285E-4 0.0 2.3605990391012998E-4 3.372284341573285E-5 14-15 2.248189561048857E-4 4.496379122097714E-4 0.0 3.0912606464421783E-4 5.058426512359928E-5 16-17 3.035055907415957E-4 4.7211980782025997E-4 0.0 4.946017034307485E-4 5.6204739026221424E-5 18-19 3.035055907415957E-4 5.002221773333707E-4 0.0 7.868663463670999E-4 8.992758244195427E-5 20-21 3.0912606464421783E-4 5.170835990412371E-4 0.0 0.0016018350622473104 1.0116853024719856E-4 22-23 3.1474653854683996E-4 5.620473902622142E-4 0.0 0.002843959794726804 1.236504258576871E-4 24-25 3.1474653854683996E-4 6.182521292884357E-4 0.0 0.004929155612599618 1.348913736629314E-4 26-27 3.1474653854683996E-4 6.632159205094128E-4 0.0 0.009408673312989467 1.461323214681757E-4 28-29 3.1474653854683996E-4 6.632159205094128E-4 0.0 0.037482940456587066 1.461323214681757E-4 30-31 3.1474653854683996E-4 7.362820812435006E-4 0.0 0.05283245468464813 1.461323214681757E-4 32-33 3.1474653854683996E-4 7.53143502951367E-4 0.0 0.058132561574820815 1.5737326927341998E-4 34-35 3.3722843415732854E-4 8.824144027116763E-4 0.0 0.06457924514112842 1.6861421707866427E-4 36-37 3.3722843415732854E-4 0.0010397876719850964 0.0 0.07428018309705423 1.6861421707866427E-4 38-39 3.3722843415732854E-4 0.00110161288491394 0.0 0.09174299551250123 1.6861421707866427E-4 40-41 3.3722843415732854E-4 0.001225263310771627 0.0 0.13534101157514117 1.6861421707866427E-4 42-43 3.484693819625728E-4 0.0012814680497978486 0.0 0.15160104257542706 1.6861421707866427E-4 44-45 3.484693819625728E-4 0.0014051184756555357 0.0 0.17345906558272456 1.742346909812864E-4 46-47 3.5408985586519494E-4 0.0015175279537079783 0.0 0.19700323076080872 1.854756387865307E-4 48-49 3.597103297678171E-4 0.0015512507971237113 0.0 0.2167254736851098 2.248189561048857E-4 50-51 3.990536470861721E-4 0.001663660275176154 0.0 0.23600369917110375 2.248189561048857E-4 52-53 4.0467412098879423E-4 0.001703003592494509 0.0 0.2663317763496528 2.529213256179964E-4 54-55 4.1591506879403855E-4 0.001747967383715486 0.0 0.33109087665566517 2.810236951311071E-4 56-57 4.271560165992828E-4 0.0017648288054233525 0.0 0.3997168630066815 2.8664416903372925E-4 58-59 4.271560165992828E-4 0.0017648288054233525 0.0 0.4623626651253079 2.978851168389735E-4 60-61 4.664993339176378E-4 0.0018097925966443298 0.0 0.4972489466388835 3.035055907415957E-4 62-63 5.5080644245697E-4 0.0018435154400600626 0.0 0.5157009624611921 3.1474653854683996E-4 64-65 5.564269163595921E-4 0.0019952682354308603 0.0 0.5273353434396199 3.1474653854683996E-4 66-67 5.845292858727028E-4 0.0020346115527492153 0.0 0.5329895401856577 3.203670124494621E-4 68-69 6.013907075805693E-4 0.0020627139222623263 0.0 0.5381884785455833 3.259874863520842E-4 70-71 6.407340248989243E-4 0.0020964367656780593 0.0 0.5430501884713514 3.484693819625728E-4 72-73 7.868663463670999E-4 0.00212453913519117 0.0 0.5472543029505127 4.496379122097714E-4 74-75 7.868663463670999E-4 0.0021414005568990363 0.0 0.5509019905133146 4.552583861123935E-4 76-77 7.981072941723442E-4 0.002208846243730502 0.0 0.553734709360236 4.6087886001501565E-4 78-79 8.093482419775885E-4 0.002259430508854101 0.0 0.5566910786330153 4.6087886001501565E-4 80-81 8.093482419775885E-4 0.0022762919305619675 0.0 0.5579275828915922 4.721198078202599E-4 82-83 8.149687158802106E-4 0.002293153352269834 0.0 0.5584559074384388 5.170835990412371E-4 84-85 8.205891897828327E-4 0.0023156352478803225 0.0 0.5588605815594274 5.170835990412371E-4 86-87 8.205891897828327E-4 0.0023493580912960555 0.0 0.5590797800416297 5.170835990412371E-4 88-89 8.655529810038099E-4 0.0024842494649589867 0.0 0.559135984780656 5.283245468464813E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10605 0.0 44.366264 1 CTTATAC 14535 0.0 36.978115 1 GTATCAA 18455 0.0 35.5777 1 TATACAC 17220 0.0 32.565845 3 TTATACA 17645 0.0 31.037119 2 TCAACGC 21590 0.0 29.605982 4 ATCAACG 21970 0.0 29.036356 3 CAACGCA 22430 0.0 28.440392 5 AACGCAG 23115 0.0 27.707602 6 TATCAAC 23515 0.0 27.417305 2 TACACAT 22480 0.0 24.98319 5 GTACATG 28940 0.0 24.328293 1 TACATGG 28680 0.0 23.839426 2 ACACATC 23195 0.0 23.372465 6 ACGCAGA 27545 0.0 23.266705 7 ACATGGG 29345 0.0 22.952261 3 CGCAGAG 27960 0.0 22.921366 8 ACATCTC 24340 0.0 22.359924 8 ATACACA 26145 0.0 22.32421 4 CACATCT 25670 0.0 20.986769 7 >>END_MODULE