##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139765_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9774361 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.534934406453786 34.0 31.0 34.0 31.0 34.0 2 32.733837229871085 34.0 31.0 34.0 31.0 34.0 3 32.827640599728205 34.0 31.0 34.0 31.0 34.0 4 36.23704475412766 37.0 37.0 37.0 35.0 37.0 5 36.078212273927676 37.0 35.0 37.0 35.0 37.0 6 36.09843538621092 37.0 36.0 37.0 35.0 37.0 7 36.121188280236424 37.0 36.0 37.0 35.0 37.0 8 36.12090826193139 37.0 36.0 37.0 35.0 37.0 9 38.00565029263806 39.0 38.0 39.0 35.0 39.0 10-11 37.89060220918789 39.0 38.0 39.0 35.0 39.0 12-13 37.92186803822777 39.0 38.0 39.0 35.0 39.0 14-15 39.269430093691035 40.0 39.0 41.0 36.0 41.0 16-17 39.23705396189071 40.0 39.0 41.0 36.0 41.0 18-19 39.26647608984362 40.0 39.0 41.0 36.0 41.0 20-21 39.307227384211885 40.0 39.0 41.0 36.0 41.0 22-23 39.26925381082779 40.0 39.0 41.0 36.0 41.0 24-25 39.260489999335675 40.0 39.0 41.0 36.0 41.0 26-27 39.16529870922594 40.0 39.0 41.0 36.0 41.0 28-29 39.093853782141366 40.0 39.0 41.0 36.0 41.0 30-31 38.98604439145211 40.0 38.5 41.0 35.0 41.0 32-33 38.91827729096131 40.0 38.0 41.0 35.0 41.0 34-35 38.860874167791735 40.0 38.0 41.0 35.0 41.0 36-37 38.7901210469465 40.0 38.0 41.0 35.0 41.0 38-39 38.697633110732745 40.0 38.0 41.0 35.0 41.0 40-41 38.68709261821424 40.0 38.0 41.0 35.0 41.0 42-43 38.62972365533079 40.0 38.0 41.0 35.0 41.0 44-45 38.592156442398064 40.0 38.0 41.0 35.0 41.0 46-47 38.48190756136519 40.0 38.0 41.0 34.0 41.0 48-49 38.45672544121582 40.0 38.0 41.0 34.0 41.0 50-51 38.34310595445431 40.0 38.0 41.0 34.0 41.0 52-53 38.17147018838263 40.0 37.0 41.0 34.0 41.0 54-55 38.0339776784767 40.0 37.0 41.0 33.5 41.0 56-57 37.8282374975351 39.5 36.5 41.0 33.0 41.0 58-59 37.61163646952494 39.0 36.0 41.0 33.0 41.0 60-61 37.44222359951189 39.0 36.0 41.0 33.0 41.0 62-63 37.25998434474465 39.0 35.0 40.5 33.0 41.0 64-65 36.999086481970046 38.5 35.0 40.0 32.0 41.0 66-67 36.78767587611637 38.0 35.0 40.0 32.0 41.0 68-69 36.497786800817764 37.0 35.0 40.0 32.0 41.0 70-71 36.15332177273713 37.0 35.0 39.0 32.0 41.0 72-73 35.89522487108128 36.0 35.0 39.0 31.0 41.0 74-75 35.538749538837976 36.0 34.5 39.0 31.0 40.0 76-77 33.55990738567284 34.5 32.0 36.5 28.0 39.0 78-79 34.651472320046636 35.0 34.0 37.0 30.5 39.0 80-81 34.61006157197903 35.0 34.0 36.5 31.0 39.0 82-83 34.369801956892914 35.0 34.0 36.0 31.0 37.5 84-85 34.1249897601469 35.0 34.0 36.0 31.0 37.0 86-87 33.92723369829581 35.0 34.0 35.0 30.0 37.0 88-89 33.74023727556946 35.0 34.0 35.0 30.0 36.0 90-91 33.71544453031291 35.0 34.0 35.0 30.0 36.0 92-93 33.6565010603241 35.0 34.0 35.0 30.0 36.0 94-95 33.58147441316032 35.0 34.0 35.0 30.0 36.0 96-97 33.572794653106605 35.0 34.0 35.0 30.0 35.0 98-99 33.64081994912523 35.0 34.0 35.0 31.0 35.0 100-101 32.34940165788632 34.0 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 10.0 20 55.0 21 169.0 22 659.0 23 2308.0 24 6287.0 25 13673.0 26 25229.0 27 41911.0 28 63183.0 29 87696.0 30 118211.0 31 155850.0 32 206435.0 33 284669.0 34 432921.0 35 694437.0 36 1312704.0 37 2540948.0 38 2821862.0 39 949819.0 40 15319.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.4333519091427 19.70054103792565 12.903595437082792 24.96251161584885 2 15.277145300024994 21.023823099436896 39.79934253234214 23.899689068195975 3 18.54799311775838 25.614363451478756 30.33281390149784 25.504829529265027 4 12.834532839275889 17.50475890759258 37.29614656882916 32.364561684302366 5 13.344648652187969 37.64225995359287 35.522786146612155 13.490305247607004 6 31.03080528596899 36.97972515555799 18.12474288516378 13.864726673309235 7 27.12704185982081 32.12233515827786 22.346985137954288 18.40363784394704 8 25.435179565794414 35.85117014358798 21.052220729427084 17.661429561190527 9 25.79663853853772 15.957560219022909 20.38341286145737 37.862388380982004 10-11 24.72331199664345 26.12976767748022 28.562601506406356 20.584318819469978 12-13 25.3460768274341 23.55627951411997 28.60732282166778 22.49032083677815 14-15 22.471758373888 25.05502279817369 25.664755969893672 26.808462858044635 16-17 22.457808023501606 28.461003542858414 26.37804342423727 22.703145009402707 18-19 22.66437673010031 27.449277758413054 27.828647826696805 22.05769768478983 20-21 23.04686632739056 26.637907899439195 27.79224196734441 22.522983805825834 22-23 22.76420863356281 26.970834626648564 27.63449911365592 22.630457626132706 24-25 22.75606452416161 26.997154194688168 27.73014185836189 22.516639422788334 26-27 22.73724937656588 27.1091235348959 27.795503881850408 22.358123206687807 28-29 22.633741335008725 26.867378851250262 27.8933474272194 22.605532386521617 30-31 22.526088511818067 26.682315745515478 28.037852543660367 22.753743199006085 32-33 22.28425384986329 27.13211532789326 27.90281598482553 22.680814837417916 34-35 22.691840306413578 26.90245606948863 27.922113824991207 22.48358979910659 36-37 22.50028429146474 27.023096917657984 27.987949984623363 22.488668806253916 38-39 22.46180638458005 26.91116909843704 28.001852001554962 22.62517251542795 40-41 22.519035839864475 26.677735172260697 28.08342524158503 22.719803746289795 42-43 22.820586874873385 26.71321369351456 27.94037939520251 22.525820036409545 44-45 22.382980709336717 26.972453965099376 27.83931167091202 22.805253654651885 46-47 22.868619703056474 26.698310538239657 27.384505632587985 23.048564126115885 48-49 22.57935155033241 26.99643799460122 27.44086497300203 22.983345482064344 50-51 22.37591344525284 27.16034332162667 27.630365413135742 22.833377819984747 52-53 22.551961086563356 27.09593516072639 27.555148707531536 22.796955045178716 54-55 22.42641738250973 26.888239950572363 27.430988026249103 23.254354640668808 56-57 22.68439436440166 26.863071506445596 27.376369935625917 23.07616419352683 58-59 22.22742365467588 26.883888769194908 27.896239061016725 22.992448515112486 60-61 22.579625968234076 26.917700444866526 27.611385144313594 22.891288442585804 62-63 22.179954471175332 27.565323451401326 27.607343297749992 22.647378779673346 64-65 21.909316665158794 27.592419058618532 27.44927568598862 23.04898859023405 66-67 21.999463375121376 27.88567202924415 27.094649130308447 23.020215465326025 68-69 22.112188465029085 27.999993933248703 26.79616963989981 23.0916479618224 70-71 22.118093267659166 27.678871380649824 26.781765021928454 23.42127032976256 72-73 22.028388720350954 27.34314774376907 26.694629456632878 23.93383407924709 74-75 22.355514550130735 27.06292957674728 26.8013057282827 23.780250144839286 76-77 22.798222194610936 26.89868598733928 26.702238710257497 23.600853107792283 78-79 22.943239610304545 26.771336568745273 26.09332402487598 24.1920997960742 80-81 22.825931615328297 27.181517492958335 26.03941996276808 23.953130928945292 82-83 22.7548470514361 27.33385746461848 26.132683982941344 23.77861150100407 84-85 22.78841779573168 27.310695022671926 26.099047061438185 23.801840120158207 86-87 23.083034272906445 27.540190232210797 26.040176237218066 23.336599257664687 88-89 23.179679385579842 27.297878555167383 26.381609279801378 23.140832779451397 90-91 22.982804148431235 27.33747019804208 26.57021963772307 23.109506015803618 92-93 22.77904226872474 26.870392859045843 26.50021114612982 23.850353726099595 94-95 22.70086932985926 26.87981310086697 27.091813634664824 23.327503934608956 96-97 22.395356391398302 27.06038574295018 27.238140386469954 23.30611747918156 98-99 22.628507416765764 27.284580247398033 27.58047033037777 22.506442005458428 100-101 23.61245406607084 30.01360548413659 24.651548163527465 21.722392286265098 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2452.0 1 2111.0 2 2557.5 3 3552.5 4 4625.5 5 7121.5 6 9424.0 7 11146.5 8 12367.5 9 12356.0 10 11076.5 11 9608.0 12 10139.5 13 13329.0 14 20531.0 15 29954.0 16 37456.0 17 41724.5 18 42544.0 19 40587.5 20 37584.0 21 34719.0 22 33498.5 23 35947.5 24 42274.0 25 52451.0 26 65829.0 27 80167.0 28 97793.0 29 118722.5 30 137804.5 31 156956.0 32 177292.5 33 195711.5 34 211765.5 35 227073.5 36 245576.0 37 264543.0 38 282622.0 39 298819.0 40 313351.5 41 330120.5 42 343343.0 43 355039.0 44 369530.5 45 382720.0 46 394298.5 47 407063.5 48 432249.0 49 445181.5 50 438725.5 51 436161.5 52 425985.0 53 407634.5 54 386858.0 55 362751.0 56 334738.5 57 303111.5 58 270483.5 59 234513.5 60 196480.5 61 161535.0 62 129475.5 63 100955.0 64 75787.5 65 56377.5 66 43066.0 67 33006.0 68 25308.0 69 18713.5 70 13368.0 71 9627.5 72 6973.5 73 4948.0 74 3488.5 75 2417.5 76 1626.0 77 1077.0 78 727.0 79 510.5 80 360.5 81 256.0 82 190.5 83 126.5 84 81.5 85 58.5 86 38.5 87 27.0 88 18.0 89 12.0 90 10.0 91 8.0 92 6.0 93 4.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001964322782839717 3 0.0022507865220038423 4 6.036200218101214E-4 5 1.0230847827290194E-5 6 3.273871304732862E-4 7 0.0 8 5.115423913645096E-5 9 4.1946476091889786E-4 10-11 4.041184891779626E-4 12-13 1.432318695820627E-4 14-15 3.5807967395515675E-5 16-17 5.115423913645097E-4 18-19 0.0 20-21 1.0742833698632308E-4 22-23 2.0464519000666377E-5 24-25 0.0 26-27 1.1262782682406781E-4 28-29 3.432606358539525E-4 30-31 8.107733510294026E-4 32-33 3.9615297390494056E-4 34-35 0.001099602625293524 36-37 2.178871442123416E-4 38-39 2.193319837105269E-4 40-41 3.252141010316421E-4 42-43 0.0014001849617915941 44-45 4.688229539127857E-4 46-47 2.4202646500232774E-4 48-49 3.528176615527646E-4 50-51 0.0 52-53 4.517520542322832E-4 54-55 7.782342130636382E-4 56-57 5.588380992355925E-4 58-59 7.213028416058354E-4 60-61 7.582292826253377E-4 62-63 6.761032653083301E-5 64-65 8.033056082752556E-4 66-67 0.0026582580371653304 68-69 0.0015574974690666127 70-71 3.241576865655676E-4 72-73 0.0 74-75 9.01114624723906E-5 76-77 6.066932216289774E-6 78-79 0.0010783773215288597 80-81 1.424183263406967E-4 82-83 1.501926126386708E-4 84-85 9.863447524024924E-4 86-87 2.683964005230918E-4 88-89 4.524561062635826E-5 90-91 3.925289956262457E-5 92-93 1.6568250156188895E-4 94-95 8.06334672700021E-4 96-97 2.0498321016689392E-5 98-99 7.108811521165527E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 270.0 20-21 758.0 22-23 1678.0 24-25 3781.0 26-27 5980.0 28-29 12589.0 30-31 23887.0 32-33 30690.0 34-35 42034.0 36-37 60312.0 38-39 43907.0 40-41 67950.0 42-43 73907.0 44-45 87658.0 46-47 86997.0 48-49 79760.0 50-51 72721.0 52-53 15387.0 54-55 21296.0 56-57 24775.0 58-59 25686.0 60-61 95405.0 62-63 96814.0 64-65 99564.0 66-67 106251.0 68-69 89557.0 70-71 83106.0 72-73 78708.0 74-75 82188.0 76-77 79340.0 78-79 85058.0 80-81 85914.0 82-83 81866.0 84-85 82956.0 86-87 87275.0 88-89 91847.0 90-91 97178.0 92-93 101183.0 94-95 114595.0 96-97 185012.0 98-99 922005.0 100-101 6246516.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.46447409440916 #Duplication Level Percentage of deduplicated Percentage of total 1 87.67418710699182 71.42331544325916 2 8.087469584918008 13.176829129797499 3 2.2647558912029764 5.5349144288719625 4 0.8910619178157428 2.9035956208166045 5 0.4093355415913007 1.667315231194273 6 0.2217918386987665 1.0840893298816223 7 0.13603363485677902 0.7757335965930873 8 0.07144602431728983 0.4656250237715507 9 0.05755183387074434 0.4219586891504092 >10 0.18220890449580374 2.266286757107552 >50 0.003522508731141289 0.1972754384660559 >100 6.352125096338697E-4 0.08306131109027323 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0461695654580388E-5 0.0 0.0 0.0 3 0.0 2.0461695654580388E-5 0.0 0.0 0.0 4 0.0 7.161593479103135E-5 0.0 2.0461695654580388E-5 0.0 5 0.0 7.161593479103135E-5 0.0 3.069254348187058E-5 0.0 6 1.0230847827290194E-5 7.161593479103135E-5 0.0 3.069254348187058E-5 1.0230847827290194E-5 7 1.0230847827290194E-5 7.161593479103135E-5 0.0 3.069254348187058E-5 1.0230847827290194E-5 8 2.0461695654580388E-5 8.184678261832155E-5 0.0 3.069254348187058E-5 1.0230847827290194E-5 9 2.0461695654580388E-5 1.9438610871851366E-4 0.0 4.0923391309160775E-5 1.0230847827290194E-5 10-11 3.069254348187058E-5 1.9438610871851366E-4 0.0 4.603881522280587E-5 1.534627174093529E-5 12-13 4.0923391309160775E-5 1.9438610871851366E-4 0.0 5.626966305009607E-5 2.0461695654580388E-5 14-15 5.115423913645097E-5 2.66002043509545E-4 0.0 6.650051087738626E-5 5.626966305009606E-5 16-17 5.115423913645097E-5 2.66002043509545E-4 0.0 8.184678261832155E-5 7.161593479103135E-5 18-19 5.115423913645097E-5 2.7111746742319013E-4 0.0 9.719305435925684E-5 7.673135870467644E-5 20-21 5.115423913645097E-5 2.7623289133683524E-4 0.0 2.1484780437309406E-4 8.696220653196664E-5 22-23 8.184678261832155E-5 3.018100109050607E-4 0.0 4.0411848917796265E-4 9.207763044561174E-5 24-25 8.696220653196664E-5 3.222717065596411E-4 0.0 5.626966305009606E-4 9.207763044561174E-5 26-27 9.207763044561174E-5 3.273871304732862E-4 0.0 8.696220653196665E-4 9.207763044561174E-5 28-29 9.207763044561174E-5 3.273871304732862E-4 0.0 0.0031408702829780893 9.207763044561174E-5 30-31 1.1253932610019213E-4 3.6831052178244695E-4 0.0 0.008962222696706209 9.207763044561174E-5 32-33 1.278855978411274E-4 3.6831052178244695E-4 0.0 0.019054954078327982 9.207763044561174E-5 34-35 1.483472934957078E-4 4.194647609188979E-4 0.0 0.03193559149288634 1.0230847827290194E-4 36-37 1.636935652366431E-4 4.706190000553489E-4 0.0 0.04913364669056115 1.0230847827290194E-4 38-39 1.636935652366431E-4 4.910806957099293E-4 0.0 0.09031792461931781 1.1253932610019213E-4 40-41 1.739244130639333E-4 5.524657826736705E-4 0.0 0.39406668118765 1.2277017392748233E-4 42-43 1.739244130639333E-4 5.678120544146057E-4 0.0 0.4295165689092105 1.2277017392748233E-4 44-45 1.739244130639333E-4 6.496588370329272E-4 0.0 0.4877710164378009 1.2277017392748233E-4 46-47 1.7903983697757837E-4 7.161593479103135E-4 0.0 0.5538111391629591 1.330010217547725E-4 48-49 1.8415526089122348E-4 7.161593479103135E-4 0.0 0.6057940769734206 1.432318695820627E-4 50-51 1.8415526089122348E-4 7.980061305286351E-4 0.0 0.6557052680988558 1.534627174093529E-4 52-53 1.9950153263215877E-4 8.082369783559253E-4 0.0 0.8452573012189748 1.7392441306393326E-4 54-55 2.0461695654580388E-4 8.133524022695703E-4 0.0 1.4874629656097211 1.9438610871851366E-4 56-57 2.0461695654580388E-4 8.184678261832155E-4 0.0 2.187662190909462 1.9438610871851366E-4 58-59 2.0461695654580388E-4 8.184678261832155E-4 0.0 2.9016167911129944 1.9438610871851366E-4 60-61 2.0461695654580388E-4 8.184678261832155E-4 0.0 3.440485777024196 2.0461695654580388E-4 62-63 2.0461695654580388E-4 8.286986740105057E-4 0.0 3.4545531927867206 2.0461695654580388E-4 64-65 2.0461695654580388E-4 9.51468847937988E-4 0.0 3.462277482896324 2.0461695654580388E-4 66-67 2.0461695654580388E-4 9.616996957652782E-4 0.0 3.4681755666687573 2.0973238045944896E-4 68-69 2.0461695654580388E-4 9.821613914198586E-4 0.0 3.473797417549853 2.1484780437309406E-4 70-71 2.1484780437309406E-4 0.0010179693588153742 0.0 3.479025380789598 2.1484780437309406E-4 72-73 2.1484780437309406E-4 0.0010384310544699546 0.0 3.482667562616114 2.2507865220038425E-4 74-75 2.1484780437309406E-4 0.0010691235979518252 0.0 3.4859874727360696 2.2507865220038425E-4 76-77 2.1484780437309406E-4 0.001099816141433696 0.0 3.4888725718233653 2.2507865220038425E-4 78-79 2.1484780437309406E-4 0.001115162413174631 0.0 3.4916297853128198 2.2507865220038425E-4 80-81 2.1484780437309406E-4 0.001115162413174631 0.0 3.492816563660786 2.3530950002767444E-4 82-83 2.1484780437309406E-4 0.001115162413174631 0.0 3.493333221476064 2.4554034785496465E-4 84-85 2.1484780437309406E-4 0.0011356241088292115 0.0 3.493788494204378 2.4554034785496465E-4 86-87 2.2507865220038425E-4 0.001156085804483792 0.0 3.494049380823974 2.4554034785496465E-4 88-89 2.2507865220038425E-4 0.001278855978411274 0.0 3.4941619201500744 2.4554034785496465E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10315 0.0 47.387516 1 GTATCAA 17660 0.0 35.87953 1 TCAACGC 20680 0.0 29.408903 4 ATCAACG 21130 0.0 28.86522 3 CAACGCA 21375 0.0 28.59369 5 TATCAAC 22140 0.0 27.899004 2 AACGCAG 22170 0.0 27.684994 6 GTACATG 28130 0.0 24.992191 1 TACATGG 28835 0.0 23.902792 2 ACGCAGA 26305 0.0 23.283672 7 ACATGGG 29455 0.0 22.71175 3 CGCAGAG 27050 0.0 22.610535 8 CATGGGG 22660 0.0 20.505068 4 GAGTACT 17255 0.0 18.822115 12-13 GCAGAGT 32460 0.0 18.77572 9 AGAGTAC 27980 0.0 17.692173 10-11 CAGAGTA 31155 0.0 17.445572 10-11 GTGGTAT 5415 0.0 16.875534 1 GAGTACA 20120 0.0 16.860361 1 GTACTTT 19620 0.0 16.54307 14-15 >>END_MODULE