##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139764_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12057465 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54975585664151 34.0 31.0 34.0 31.0 34.0 2 32.73360096836275 34.0 31.0 34.0 31.0 34.0 3 32.82366691506051 34.0 31.0 34.0 31.0 34.0 4 36.22971702592543 37.0 37.0 37.0 35.0 37.0 5 36.0843106739269 37.0 35.0 37.0 35.0 37.0 6 36.106289671999875 37.0 36.0 37.0 35.0 37.0 7 36.12422279475827 37.0 36.0 37.0 35.0 37.0 8 36.1197345378983 37.0 36.0 37.0 35.0 37.0 9 37.986997847391635 39.0 38.0 39.0 35.0 39.0 10-11 37.8733960247863 39.0 38.0 39.0 35.0 39.0 12-13 37.905211833498996 39.0 38.0 39.0 35.0 39.0 14-15 39.26229738174649 40.0 39.0 41.0 36.0 41.0 16-17 39.23200797182493 40.0 39.0 41.0 36.0 41.0 18-19 39.25598573166084 40.0 39.0 41.0 36.0 41.0 20-21 39.29347278489564 40.0 39.0 41.0 36.0 41.0 22-23 39.256713290072355 40.0 39.0 41.0 36.0 41.0 24-25 39.24860241263501 40.0 39.0 41.0 36.0 41.0 26-27 39.15376374612348 40.0 39.0 41.0 36.0 41.0 28-29 39.07509648342398 40.0 39.0 41.0 36.0 41.0 30-31 38.96846284931948 40.0 38.5 41.0 35.0 41.0 32-33 38.91309925078032 40.0 38.0 41.0 35.0 41.0 34-35 38.85377661478547 40.0 38.0 41.0 35.0 41.0 36-37 38.79274281737331 40.0 38.0 41.0 35.0 41.0 38-39 38.70392622434265 40.0 38.0 41.0 35.0 41.0 40-41 38.692842432132764 40.0 38.0 41.0 35.0 41.0 42-43 38.6406223812312 40.0 38.0 41.0 35.0 41.0 44-45 38.61485951817058 40.0 38.0 41.0 35.0 41.0 46-47 38.51412168319744 40.0 38.0 41.0 34.0 41.0 48-49 38.50192718228365 40.0 38.0 41.0 34.0 41.0 50-51 38.421387237452635 40.0 38.0 41.0 34.0 41.0 52-53 38.26029943066135 40.0 38.0 41.0 34.0 41.0 54-55 38.12214500224243 40.0 37.0 41.0 33.5 41.0 56-57 37.93232182380805 40.0 37.0 41.0 33.0 41.0 58-59 37.72419554131821 39.5 36.5 41.0 33.0 41.0 60-61 37.56347411369008 39.0 36.0 41.0 33.0 41.0 62-63 37.39541327922066 39.0 36.0 41.0 33.0 41.0 64-65 37.13479867577078 39.0 35.0 40.0 32.0 41.0 66-67 36.933298744507226 38.0 35.0 40.0 32.0 41.0 68-69 36.65140208101649 37.5 35.0 40.0 32.0 41.0 70-71 36.316944822249184 37.0 35.0 39.5 32.0 41.0 72-73 36.05016322816434 36.5 35.0 39.0 31.0 41.0 74-75 35.68943286072182 36.0 34.5 39.0 31.0 40.5 76-77 33.687589256676304 34.5 32.0 36.5 28.5 39.0 78-79 34.81395923870606 35.0 34.0 37.0 30.5 39.0 80-81 34.77648710038967 35.0 34.0 37.0 31.0 39.0 82-83 34.529481052428636 35.0 34.0 36.5 31.0 38.5 84-85 34.25619182490291 35.0 34.0 36.0 31.0 37.0 86-87 34.03769210386814 35.0 34.0 36.0 30.5 37.0 88-89 33.83233920851079 35.0 34.0 35.0 30.0 36.5 90-91 33.77645655371349 35.0 34.0 35.0 30.0 36.0 92-93 33.69572817419636 35.0 34.0 35.0 30.0 36.0 94-95 33.61240542343196 35.0 34.0 35.0 30.0 36.0 96-97 33.61505964246446 35.0 34.0 35.0 30.5 35.5 98-99 33.67400717678764 35.0 34.0 35.0 31.0 35.0 100-101 32.416584340878146 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 9.0 19 33.0 20 58.0 21 201.0 22 796.0 23 2871.0 24 7737.0 25 16759.0 26 31744.0 27 52577.0 28 79037.0 29 109518.0 30 147882.0 31 193746.0 32 256810.0 33 351172.0 34 520205.0 35 822776.0 36 1530726.0 37 3000744.0 38 3612314.0 39 1300159.0 40 19591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.3826898937712 19.780509418853796 13.061999350609769 24.774801336765233 2 15.140288394502422 21.230507759905795 40.12235310353934 23.50685074205245 3 18.539386974603687 25.480294569610944 30.416107110914126 25.56421134487124 4 12.649178098097433 17.577562326869806 38.26231194121452 31.510947633818237 5 13.182763805058842 37.70405617632365 35.886128293644504 13.227051724973013 6 30.77631418748899 37.583678819302186 18.40462945116249 13.235377542046336 7 26.90251226107644 32.23102036787998 22.859738759349497 18.006728611694083 8 24.9116252437599 36.4115606779173 21.237302154624786 17.43951192369802 9 25.527859827334463 16.27421798121737 20.841175326552168 37.356746864896 10-11 24.283301598301886 26.480891532873553 29.064062410519092 20.17174445830547 12-13 24.91652673246995 23.944161341537058 29.123198738572732 22.01611318742026 14-15 22.011345422915095 25.532397511698463 26.25631025236946 26.199946813016982 16-17 22.020736282074342 28.746438810236057 27.03081016439922 22.202014743290373 18-19 22.037057540701962 27.98319961948884 28.39703038739901 21.58271245241019 20-21 22.593415919244762 27.247702495641867 28.31849437718767 21.840387207925698 22-23 22.297968302169263 27.371850108532854 28.18169066378573 22.148490925512153 24-25 22.20855329501535 27.487675148629187 28.254899117011455 22.04887243934401 26-27 22.25215654535076 27.63225028318314 28.182738224731587 21.932854946734512 28-29 22.055184744925572 27.52097897494799 28.25525088492251 22.168585395203923 30-31 22.421443731521205 27.48854147338326 28.187888148778327 21.902126646317207 32-33 22.228359608375307 27.60824394601312 28.22953968686995 21.93385675874163 34-35 22.27657231948033 27.64314312559293 28.238012411955832 21.842272142970913 36-37 22.294616323781586 27.502774055745665 28.13297707579336 22.069632544679386 38-39 22.041563724828876 27.50076031409802 28.354784944519118 22.10289101655398 40-41 22.217546419671123 27.382604560276842 28.298109347066045 22.101739672985985 42-43 22.191465392482257 27.460485773554883 28.209497504269137 22.13855132969372 44-45 22.128235945588763 27.60457806593573 28.08039326557934 22.186792722896165 46-47 22.377783241247098 27.481248269427795 27.724915437111548 22.416053052213563 48-49 22.188353282765842 27.602660429174197 27.83796878399479 22.371017504065176 50-51 22.166736262483298 27.746129247022548 27.841319073737992 22.245815416756166 52-53 22.30784757364546 27.6857232165609 27.81227876752469 22.19415044226895 54-55 22.193458520961208 27.64199417769076 27.748023736249667 22.416523565098366 56-57 22.320320303689495 27.801769321801885 27.57794470302466 22.29996567148396 58-59 22.157873071235574 27.845319372677306 27.81147177456486 22.185335781522262 60-61 22.335859245273294 27.970262854635504 27.53548094003424 22.15839696005696 62-63 22.218312923530025 28.115040224476807 27.528636225903274 22.138010626089894 64-65 22.213266472663193 27.982840495448137 27.51371423181646 22.290178800072212 66-67 22.24964338843491 27.94891843609185 27.442785128723667 22.358653046749566 68-69 22.256866113019782 27.90106042015248 27.483279539802126 22.358793927025612 70-71 22.286834054735717 27.709589588962686 27.52679328570157 22.476783070600035 72-73 22.261692196067102 27.724758059818665 27.479274505244817 22.534275238869416 74-75 22.168804348961686 27.840182468180473 27.465734978472266 22.525278204385565 76-77 22.380365033158654 27.766511743728955 27.401974083575283 22.451149139537108 78-79 22.302911843890442 27.75285695535354 27.36395311948991 22.580278081266115 80-81 22.318925802536985 27.812149702282447 27.35565160256345 22.513272892617117 82-83 22.33358059116785 27.80689376738031 27.41607585795598 22.44344978349586 84-85 22.414186962138793 27.766335668938012 27.424739465960158 22.394737902963037 86-87 22.325987746995697 27.757149009055244 27.46818027647948 22.44868296746958 88-89 22.35756226452905 27.767569992581915 27.471428370619684 22.403439372269354 90-91 22.356204405238845 27.848689880196076 27.4620579099227 22.333047804642383 92-93 22.391289082433016 27.785315723597005 27.499879192837607 22.323516001132376 94-95 22.332747263336664 27.843617380077372 27.497385176970113 22.32625017961585 96-97 22.334746160694202 27.829279495940295 27.55826999339285 22.277704349972648 98-99 22.58099347804958 28.40735532635314 27.635670782235174 21.375980413362107 100-101 23.38568304077778 30.980081241912288 24.738963882871662 20.89527183443827 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2675.0 1 2140.0 2 2369.5 3 3340.0 4 4444.0 5 7041.0 6 9383.5 7 11158.0 8 12545.0 9 12553.5 10 11345.0 11 10194.0 12 10960.5 13 14414.5 14 22240.5 15 32323.5 16 40476.0 17 45690.5 18 47618.5 19 46322.0 20 43864.0 21 41980.0 22 42506.5 23 47705.0 24 57736.0 25 72563.5 26 92035.0 27 114115.5 28 139195.5 29 166777.5 30 192677.5 31 219993.0 32 248324.5 33 274154.5 34 298685.5 35 321815.0 36 347795.0 37 372206.5 38 392181.5 39 410856.5 40 429089.0 41 448325.0 42 463791.5 43 475646.0 44 486562.0 45 497205.5 46 505696.5 47 510712.0 48 520133.5 49 519379.0 50 507133.0 51 494210.0 52 472868.5 53 444774.5 54 414962.0 55 382987.5 56 350057.0 57 317646.5 58 282970.0 59 245051.0 60 205320.5 61 168582.0 62 135260.0 63 105217.5 64 79098.5 65 59140.0 66 45056.5 67 34635.5 68 26239.5 69 19157.5 70 13962.0 71 10273.5 72 7558.0 73 5445.5 74 3810.0 75 2653.5 76 1841.5 77 1253.0 78 850.0 79 589.0 80 419.5 81 300.5 82 213.5 83 137.0 84 86.5 85 56.5 86 43.0 87 37.0 88 29.5 89 20.5 90 10.0 91 5.0 92 4.0 93 3.5 94 3.0 95 2.5 96 2.5 97 3.0 98 1.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019158255902049061 3 0.0023305064538856218 4 5.390851227849304E-4 5 8.293617273614313E-6 6 4.395617155015586E-4 7 0.0 8 4.976170364168588E-5 9 4.1468086368071566E-4 10-11 6.178744868842662E-4 12-13 9.952340728337176E-5 14-15 2.9027660457650093E-5 16-17 3.9809362913348703E-4 18-19 0.0 20-21 6.635267475096598E-5 22-23 8.295081257371734E-6 24-25 0.0 26-27 7.470202606835103E-5 28-29 2.2425918780548303E-4 30-31 5.863444372692334E-4 32-33 3.0006143757934435E-4 34-35 9.737952126221246E-4 36-37 1.0911141135400757E-4 38-39 1.0971635831657802E-4 40-41 2.631192979501818E-4 42-43 0.0013620072725210892 44-45 3.998647855077995E-4 46-47 1.387056577517651E-4 48-49 3.669785051951924E-4 50-51 0.0 52-53 4.783681268632273E-4 54-55 7.132182112959768E-4 56-57 6.870146331422684E-4 58-59 6.380322037025959E-4 60-61 6.613684214367294E-4 62-63 8.275262825795374E-5 64-65 6.674280599456074E-4 66-67 0.0026095414656840386 68-69 0.0012268370221098209 70-71 1.7608110467003257E-4 72-73 0.0 74-75 1.2575723996522523E-4 76-77 0.0 78-79 9.786060970798885E-4 80-81 1.5380640080717598E-4 82-83 1.251641089214123E-4 84-85 8.385757790621571E-4 86-87 2.447067009208466E-4 88-89 2.0595779255467728E-5 90-91 3.122237307832148E-5 92-93 1.210702122481891E-4 94-95 5.169925043015642E-4 96-97 1.6240429379629674E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 404.0 20-21 1252.0 22-23 2312.0 24-25 4271.0 26-27 6863.0 28-29 13103.0 30-31 24688.0 32-33 31423.0 34-35 43762.0 36-37 62742.0 38-39 67973.0 40-41 69673.0 42-43 77600.0 44-45 92519.0 46-47 92332.0 48-49 85115.0 50-51 76286.0 52-53 69188.0 54-55 79467.0 56-57 85072.0 58-59 87096.0 60-61 88381.0 62-63 86055.0 64-65 92312.0 66-67 98146.0 68-69 91017.0 70-71 86996.0 72-73 82973.0 74-75 85972.0 76-77 82741.0 78-79 89272.0 80-81 91287.0 82-83 89402.0 84-85 88883.0 86-87 95182.0 88-89 100851.0 90-91 108375.0 92-93 114023.0 94-95 133756.0 96-97 224011.0 98-99 1070412.0 100-101 7984277.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.92612497918776 #Duplication Level Percentage of deduplicated Percentage of total 1 88.90185773721714 74.61188423335655 2 7.638587726467601 12.821541363920192 3 1.9448543824747568 4.8967227590969244 4 0.7168505582408242 2.4064995816927968 5 0.313268098071767 1.314568877538178 6 0.16784862037285803 0.8452130574598035 7 0.09388855335433913 0.5515791724051983 8 0.05505262606778507 0.3696282860637936 9 0.04329531259526805 0.3270247034295121 >10 0.12111033091066142 1.5902614532619184 >50 0.0027280051223141544 0.15677521587196724 >100 6.411531286316364E-4 0.09492942580702983 >500 1.6895976030565546E-5 0.013371870096153685 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.293617273614313E-6 2 0.0 1.6587234547228626E-5 0.0 8.293617273614313E-6 8.293617273614313E-6 3 0.0 1.6587234547228626E-5 0.0 8.293617273614313E-6 8.293617273614313E-6 4 0.0 2.488085182084294E-5 0.0 8.293617273614313E-6 8.293617273614313E-6 5 0.0 3.317446909445725E-5 0.0 8.293617273614313E-6 8.293617273614313E-6 6 7.464255546252882E-5 3.317446909445725E-5 0.0 8.293617273614313E-6 8.293617273614313E-6 7 7.464255546252882E-5 3.317446909445725E-5 0.0 2.488085182084294E-5 8.293617273614313E-6 8 7.464255546252882E-5 5.805532091530019E-5 0.0 2.488085182084294E-5 8.293617273614313E-6 9 7.464255546252882E-5 1.32697876377829E-4 0.0 4.976170364168588E-5 8.293617273614313E-6 10-11 7.464255546252882E-5 1.32697876377829E-4 0.0 9.952340728337176E-5 8.293617273614313E-6 12-13 7.464255546252882E-5 1.32697876377829E-4 0.0 1.1611064183060038E-4 8.293617273614313E-6 14-15 8.293617273614313E-5 1.5757872819867195E-4 0.0 1.7416596274590058E-4 1.6587234547228626E-5 16-17 1.5757872819867195E-4 1.5757872819867195E-4 0.0 2.5295532684523655E-4 2.488085182084294E-5 18-19 1.5757872819867195E-4 1.617255368354791E-4 0.0 4.105340550439085E-4 3.317446909445725E-5 20-21 1.5757872819867195E-4 1.6587234547228626E-4 0.0 6.842234250731808E-4 3.317446909445725E-5 22-23 1.617255368354791E-4 1.7416596274590058E-4 0.0 0.0010698766282962464 3.317446909445725E-5 24-25 1.6587234547228626E-4 1.9904681456674352E-4 0.0 0.0013394191896887115 3.317446909445725E-5 26-27 1.6587234547228626E-4 2.0734043184035783E-4 0.0 0.001613108559717984 3.317446909445725E-5 28-29 1.6587234547228626E-4 2.0734043184035783E-4 0.0 0.002836417107576095 3.732127773126441E-5 30-31 1.7001915410909342E-4 2.2392766638758646E-4 0.0 0.006527076794334464 4.1468086368071566E-5 32-33 1.824595800195149E-4 2.280744750243936E-4 0.0 0.012917308903654293 4.976170364168588E-5 34-35 1.907531972931292E-4 3.2759788230776537E-4 0.0 0.021588285763218057 5.805532091530019E-5 36-37 1.907531972931292E-4 4.2297448095432997E-4 0.0 0.033361075483113574 5.805532091530019E-5 38-39 1.907531972931292E-4 4.312680982279443E-4 0.0 0.05239492712605842 5.805532091530019E-5 40-41 1.907531972931292E-4 4.8102980186963016E-4 0.0 0.09181863683618405 5.805532091530019E-5 42-43 1.907531972931292E-4 5.183510796008946E-4 0.0 0.10746039901422065 6.220212955210735E-5 44-45 1.9490000592993636E-4 5.639659746057733E-4 0.0 0.12973705501114868 6.63489381889145E-5 46-47 1.9904681456674352E-4 5.888468264266162E-4 0.0 0.15365170041961557 6.63489381889145E-5 48-49 2.0319362320355067E-4 5.888468264266162E-4 0.0 0.17296753504986329 6.63489381889145E-5 50-51 2.1563404911397214E-4 6.386085300683021E-4 0.0 0.1921631122296436 6.63489381889145E-5 52-53 2.1563404911397214E-4 6.427553387051093E-4 0.0 0.21870683431384624 6.63489381889145E-5 54-55 2.1563404911397214E-4 6.510489559787236E-4 0.0 0.27136715719266036 6.63489381889145E-5 56-57 2.1563404911397214E-4 6.551957646155307E-4 0.0 0.32876728234334496 6.63489381889145E-5 58-59 2.1563404911397214E-4 6.551957646155307E-4 0.0 0.38058994987752404 6.63489381889145E-5 60-61 2.488085182084294E-4 6.676361905259522E-4 0.0 0.4125328168068495 6.63489381889145E-5 62-63 2.9027660457650096E-4 6.800766164363737E-4 0.0 0.43100684928382543 6.63489381889145E-5 64-65 2.9027660457650096E-4 7.049574682572166E-4 0.0 0.4437541390333706 6.63489381889145E-5 66-67 2.985702218501153E-4 7.132510855308309E-4 0.0 0.45008631582177516 6.63489381889145E-5 68-69 3.068638391237296E-4 7.298383200780596E-4 0.0 0.4566092458074728 6.63489381889145E-5 70-71 3.1930426503415106E-4 7.381319373516739E-4 0.0 0.46197521618350124 6.63489381889145E-5 72-73 3.815063945862584E-4 7.381319373516739E-4 0.0 0.46532998437067824 7.464255546252882E-5 74-75 3.815063945862584E-4 7.42278745988481E-4 0.0 0.468195429138712 7.464255546252882E-5 76-77 3.815063945862584E-4 7.713064064461311E-4 0.0 0.47070010155534353 7.464255546252882E-5 78-79 3.815063945862584E-4 7.837468323565526E-4 0.0 0.4729974335401347 7.464255546252882E-5 80-81 3.815063945862584E-4 7.878936409933597E-4 0.0 0.4740424293166101 7.464255546252882E-5 82-83 3.8565320322306556E-4 7.920404496301669E-4 0.0 0.4744488165630172 7.464255546252882E-5 84-85 3.898000118598727E-4 8.169213014510098E-4 0.0 0.47473909316759366 7.464255546252882E-5 86-87 3.939468204966799E-4 8.459489619086599E-4 0.0 0.4748966718957924 7.464255546252882E-5 88-89 4.1468086368071566E-4 8.791234310031172E-4 0.0 0.4749837548771653 7.464255546252882E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12660 0.0 39.477943 1 GTATCAA 20295 0.0 31.86054 1 TCAACGC 21265 0.0 29.28573 4 ATCAACG 21815 0.0 28.567585 3 CAACGCA 22165 0.0 28.194405 5 AACGCAG 22940 0.0 27.27965 6 TATCAAC 25245 0.0 25.218794 2 GTACATG 28290 0.0 22.856476 1 ACGCAGA 27505 0.0 22.736214 7 CGCAGAG 28275 0.0 22.117048 8 TACATGG 28460 0.0 22.096022 2 CTTATAC 14125 0.0 21.677706 1 ACATGGG 29315 0.0 20.948568 3 TATACAC 18400 0.0 18.923706 3 CATGGGG 21915 0.0 18.556099 4 GCAGAGT 35380 0.0 17.663267 9 GAGTACT 19865 0.0 17.429659 12-13 TTATACA 18525 0.0 17.043222 2 AGAGTAC 29735 0.0 16.865652 10-11 CAGAGTA 32880 0.0 16.56299 10-11 >>END_MODULE