##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139761_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5636335 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21115671797365 33.0 33.0 34.0 30.0 34.0 2 32.516315478054445 33.0 33.0 34.0 31.0 34.0 3 32.827699737506734 33.0 33.0 34.0 32.0 34.0 4 32.999439351990254 33.0 33.0 34.0 32.0 34.0 5 33.12132263252628 34.0 33.0 34.0 32.0 34.0 6 36.74673826165407 38.0 37.0 38.0 34.0 38.0 7 37.20723324642698 38.0 38.0 38.0 36.0 38.0 8 37.374570709512476 38.0 38.0 38.0 37.0 38.0 9 37.381336808404754 38.0 38.0 38.0 37.0 38.0 10-11 37.426328545056315 38.0 38.0 38.0 37.0 38.0 12-13 37.42945921418794 38.0 38.0 38.0 37.0 38.0 14-15 37.43992789640786 38.0 38.0 38.0 37.0 38.0 16-17 37.39817230523026 38.0 38.0 38.0 37.0 38.0 18-19 37.381830391557635 38.0 38.0 38.0 37.0 38.0 20-21 37.441919760374205 38.0 38.0 38.0 37.0 38.0 22-23 37.45784570382445 38.0 38.0 38.0 37.0 38.0 24-25 37.45895265813982 38.0 38.0 38.0 37.0 38.0 26-27 37.36892732747326 38.0 38.0 38.0 37.0 38.0 28-29 37.2825581487013 38.0 38.0 38.0 37.0 38.0 30-31 37.361284177684865 38.0 38.0 38.0 37.0 38.0 32-33 37.37920604730382 38.0 38.0 38.0 37.0 38.0 34-35 37.33342762035528 38.0 38.0 38.0 37.0 38.0 36-37 37.33830923111128 38.0 38.0 38.0 37.0 38.0 38-39 37.3327906504683 38.0 38.0 38.0 37.0 38.0 40-41 37.29599088342037 38.0 38.0 38.0 37.0 38.0 42-43 37.296973071105775 38.0 38.0 38.0 37.0 38.0 44-45 37.23512447414045 38.0 38.0 38.0 37.0 38.0 46-47 37.21581142504255 38.0 38.0 38.0 37.0 38.0 48-49 37.198159361459105 38.0 38.0 38.0 37.0 38.0 50-51 37.20080650759688 38.0 38.0 38.0 37.0 38.0 52-53 37.18490059923677 38.0 38.0 38.0 37.0 38.0 54-55 37.14600229952197 38.0 38.0 38.0 36.5 38.0 56-57 37.1420132656027 38.0 38.0 38.0 36.0 38.0 58-59 37.155271921065726 38.0 38.0 38.0 36.0 38.0 60-61 37.16873602349082 38.0 38.0 38.0 36.0 38.0 62-63 37.103141300655395 38.0 38.0 38.0 36.0 38.0 64-65 37.13655498562846 38.0 38.0 38.0 36.0 38.0 66-67 37.15549989515224 38.0 38.0 38.0 36.0 38.0 68-69 37.129679753383314 38.0 38.0 38.0 36.0 38.0 70-71 37.08403196464242 38.0 38.0 38.0 36.0 38.0 72-73 37.1060174692695 38.0 38.0 38.0 36.0 38.0 74-75 37.130248136854455 38.0 38.0 38.0 36.0 38.0 76-77 37.0705229086053 38.0 38.0 38.0 36.0 38.0 78-79 37.09788008082394 38.0 38.0 38.0 36.0 38.0 80-81 37.07884393417563 38.0 38.0 38.0 36.0 38.0 82-83 37.03570026369089 38.0 38.0 38.0 36.0 38.0 84-85 37.063688595367594 38.0 38.0 38.0 36.0 38.0 86-87 37.089008640772164 38.0 38.0 38.0 36.0 38.0 88-89 37.00497937081221 38.0 38.0 38.0 36.0 38.0 90-91 36.967407773625496 38.0 38.0 38.0 36.0 38.0 92-93 37.02536913643583 38.0 38.0 38.0 36.0 38.0 94-95 37.012132131963455 38.0 38.0 38.0 36.0 38.0 96-97 36.96064587432568 38.0 38.0 38.0 36.0 38.0 98-99 36.97244435409955 38.0 38.0 38.0 35.5 38.0 100 35.45102407757845 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 12.0 20 42.0 21 85.0 22 285.0 23 788.0 24 2004.0 25 4015.0 26 7363.0 27 12561.0 28 19548.0 29 28435.0 30 39508.0 31 52967.0 32 69702.0 33 92714.0 34 134494.0 35 239427.0 36 677398.0 37 4254983.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.847086803747466 20.58768685679613 12.550975057373275 25.014251282083126 2 14.45869918901129 22.72943564340626 40.21501579928783 22.596849368294617 3 17.799545271883236 27.424363527008243 31.011996270626213 23.764094930482308 4 12.329862754713526 18.374077325466278 39.81812994692292 29.477929972897265 5 12.667659547589796 38.473053467240966 36.094202327698966 12.765084657470277 6 28.717369689890077 38.86180070556625 19.497016140307053 12.92381346423662 7 25.22395770866585 33.14073762865637 24.65610613427314 16.979198528404645 8 24.140456520061353 36.294436012053936 22.476236774428774 17.08887069345594 9 25.84676035047597 16.112331861040907 21.645998685315902 36.394909103167215 10-11 23.709884171185706 26.632953860975263 30.0025725937156 19.654589374123432 12-13 24.6525623476958 24.61798313975305 29.787876341629797 20.941578170921353 14-15 21.890794283874186 25.65750616313615 27.276164386964226 25.17553516602544 16-17 21.48757126749918 28.63963905623069 27.98298007481812 21.889809601452008 18-19 21.56484666010803 27.97171388854637 29.510896708588113 20.952542742757483 20-21 22.249206448760955 27.31312834172653 29.266540512253393 21.171124697259128 22-23 21.96779825832135 27.290776019408803 29.176386548650335 21.565039173619517 24-25 21.782432878203842 27.34215839869088 29.253546111560937 21.621862611544344 26-27 21.726327700701336 27.494699774574038 29.20076363000043 21.57820889472419 28-29 21.718432011938347 27.450898048671434 29.152759278492663 21.677910660897552 30-31 21.875877470097777 27.410143060857546 29.128655188105583 21.585324280939094 32-33 21.596234965027982 27.52913918750661 29.213309247779335 21.661316599686074 34-35 21.77141882738631 27.53221956271898 29.1523097329409 21.54405187695381 36-37 21.795107162861115 27.4808748524426 29.134965238038298 21.589052746657988 38-39 21.64969755251977 27.59258038030044 29.163327074466505 21.594394992713287 40-41 21.854437271116613 27.446334581150655 29.045033715371744 21.65419443236098 42-43 21.80744236312965 27.466105631009434 28.94090609874795 21.78554590711297 44-45 21.786527455398915 27.65744590039297 28.808313257705244 21.747713386502877 46-47 21.90720037093099 27.62257922158975 28.592158709767357 21.87806169771191 48-49 21.831889710561608 27.708482365931413 28.545618403646344 21.914009519860635 50-51 21.808864510139248 27.798169969351115 28.46211559509092 21.930849925418716 52-53 21.98911249105356 27.69785298075609 28.41268658935575 21.9003479388346 54-55 21.932257152067418 27.69332363549327 28.38064289483459 21.99377631760472 56-57 21.928109457476985 27.84264287950824 28.30398201605825 21.925265646956525 58-59 21.918800007981325 27.90066244986731 28.31468364028174 21.865853901869624 60-61 22.027427455472516 27.90507648057924 28.254664237716042 21.812831826232205 62-63 21.919484300914714 27.960516457490282 28.24095301334487 21.879046228250136 64-65 21.915563234273545 27.944593772556047 28.225484636116267 21.91435835705414 66-67 21.967229397445408 27.962249225368456 28.134505250399037 21.9360161267871 68-69 21.94912397502128 27.885225558523864 28.185966745603018 21.97968372085184 70-71 22.027100755379543 27.662192460537522 28.225879726241036 22.084827057841906 72-73 22.072832628495757 27.63236884281332 28.181998526358328 22.112800002332598 74-75 21.888289604160143 27.799707548858244 28.185631238350737 22.12637160863088 76-77 22.0701776313741 27.721626270337378 28.094824622169796 22.11337147611873 78-79 22.018260585911666 27.734686399628224 28.076125618889307 22.170927395570807 80-81 22.098067816184916 27.74752375851407 27.984908119040576 22.16950030626044 82-83 22.072293926976062 27.747259388285684 28.065729084000363 22.114717600737897 84-85 22.13220181307888 27.694355507407952 28.020059063261133 22.153383616252043 86-87 21.996720484211274 27.77705767680359 28.05258720810544 22.173634630879693 88-89 22.117342916146583 27.713499721672854 28.003047824773585 22.166109537406978 90-91 22.175723660926845 27.771586524014406 27.951477732778912 22.10121208227984 92-93 22.19165618795762 27.72364641761052 27.939166628360905 22.145530766070955 94-95 22.09881149886803 27.766139700515858 27.990160156395323 22.144888644220785 96-97 22.18852998677441 27.885686295573514 28.014747152673458 21.91103656497862 98-99 23.222664172867134 29.75588806215986 28.27935999738641 18.742087767586597 100 29.505293170540504 40.82376476706751 29.670942062391987 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1402.0 1 1367.5 2 1867.5 3 2654.5 4 3420.5 5 4624.0 6 5713.5 7 6831.5 8 7917.5 9 8296.5 10 7986.5 11 7749.5 12 8442.5 13 10515.5 14 14413.5 15 18465.0 16 20932.5 17 21984.5 18 21677.0 19 20298.0 20 19047.0 21 18736.0 22 20228.5 23 24393.5 24 31435.0 25 40891.5 26 52940.5 27 66561.5 28 80975.5 29 96525.0 30 110683.0 31 124016.5 32 137834.0 33 150709.5 34 162534.0 35 173826.5 36 186090.0 37 197311.5 38 206611.5 39 214209.0 40 221056.0 41 228383.5 42 232935.5 43 236562.5 44 240850.5 45 243333.0 46 242589.0 47 240076.5 48 236056.5 49 229508.0 50 222960.5 51 215406.5 52 205287.5 53 193529.0 54 180243.5 55 167458.5 56 154463.0 57 139994.0 58 124831.5 59 108301.0 60 91042.0 61 73517.5 62 57331.0 63 44204.5 64 33863.0 65 25500.0 66 18810.0 67 14418.0 68 11091.5 69 8149.0 70 5964.5 71 4404.0 72 3246.5 73 2242.5 74 1423.0 75 937.0 76 649.5 77 403.0 78 246.5 79 163.5 80 104.5 81 62.0 82 41.0 83 31.0 84 24.5 85 21.5 86 18.5 87 11.0 88 4.0 89 0.5 90 0.5 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.871012812403804E-5 3 0.0 4 5.322607687442283E-5 5 0.003743567406834406 6 1.9516228187288373E-4 7 5.322607687442283E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0011186750909411823 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.8787019822560356E-5 48-49 9.492513159945619E-5 50-51 5.372087573085573E-4 52-53 1.8403790793455226E-4 54-55 3.715383987379427E-4 56-57 5.035889103007433E-4 58-59 4.888536869893786E-4 60-61 3.0255977673508958E-5 62-63 4.892911496405239E-4 64-65 1.235769979954781E-4 66-67 1.874042091193595E-4 68-69 7.057871491329299E-4 70-71 8.531498719848617E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.736605814463514E-4 90-91 0.0 92-93 0.0 94-95 4.94389727174737E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 189.0 22-23 412.0 24-25 650.0 26-27 2134.0 28-29 6160.0 30-31 14040.0 32-33 18661.0 34-35 23837.0 36-37 38597.0 38-39 47753.0 40-41 44754.0 42-43 47535.0 44-45 54493.0 46-47 55828.0 48-49 55730.0 50-51 51752.0 52-53 47601.0 54-55 49575.0 56-57 51678.0 58-59 53411.0 60-61 53941.0 62-63 49715.0 64-65 51643.0 66-67 55393.0 68-69 57176.0 70-71 60339.0 72-73 52076.0 74-75 50034.0 76-77 51824.0 78-79 54788.0 80-81 56762.0 82-83 52476.0 84-85 50277.0 86-87 50835.0 88-89 53717.0 90-91 56033.0 92-93 54842.0 94-95 59897.0 96-97 166482.0 98-99 1225886.0 100-101 2607322.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.5715481679162 #Duplication Level Percentage of deduplicated Percentage of total 1 92.5860262905725 82.93073713561971 2 5.539091623726092 9.922900243621656 3 1.1096772300366362 2.981865223831991 4 0.36776507273836023 1.3176514770904497 5 0.15661343458559346 0.7014053899863139 6 0.0829656735546977 0.445881829505293 7 0.04435038836716518 0.27807730635267286 8 0.025985007333422867 0.18620138688074736 9 0.020795672454747376 0.16764305192681514 >10 0.06519398028041418 0.872968260953052 >50 7.473878440910638E-4 0.04505013358165045 >100 7.334369945109159E-4 0.11857131013044868 >500 5.480151173839331E-5 0.03104725051926007 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.774202562480761E-5 2 0.0 1.774202562480761E-5 0.0 0.0 1.774202562480761E-5 3 0.0 1.774202562480761E-5 0.0 0.0 1.774202562480761E-5 4 0.0 1.596782306232685E-4 0.0 0.0 1.774202562480761E-5 5 0.0 1.596782306232685E-4 0.0 1.774202562480761E-5 1.774202562480761E-5 6 7.096810249923045E-5 1.596782306232685E-4 0.0 1.774202562480761E-5 1.774202562480761E-5 7 7.096810249923045E-5 1.596782306232685E-4 0.0 3.548405124961522E-5 1.774202562480761E-5 8 7.096810249923045E-5 1.951622818728837E-4 0.0 3.548405124961522E-5 1.774202562480761E-5 9 7.096810249923045E-5 2.6613038437211416E-4 0.0 5.322607687442283E-5 1.774202562480761E-5 10-11 7.096810249923045E-5 2.6613038437211416E-4 0.0 5.322607687442283E-5 1.774202562480761E-5 12-13 7.096810249923045E-5 2.6613038437211416E-4 0.0 5.322607687442283E-5 1.774202562480761E-5 14-15 7.096810249923045E-5 3.459694996837484E-4 0.0 5.322607687442283E-5 3.548405124961522E-5 16-17 8.871012812403805E-5 3.548405124961522E-4 0.0 7.096810249923045E-5 3.548405124961522E-5 18-19 8.871012812403805E-5 3.9919557655817124E-4 0.0 7.096810249923045E-5 3.548405124961522E-5 20-21 1.0645215374884566E-4 4.5242165343259405E-4 0.0 8.871012812403805E-5 6.209708968682664E-5 22-23 1.0645215374884566E-4 5.145187431194206E-4 0.0 1.0645215374884566E-4 8.871012812403805E-5 24-25 1.0645215374884566E-4 5.50002794369036E-4 0.0 1.2419417937365327E-4 1.0645215374884566E-4 26-27 1.0645215374884566E-4 5.677448199938436E-4 0.0 1.508072178108647E-4 1.0645215374884566E-4 28-29 1.0645215374884566E-4 5.677448199938436E-4 0.0 4.967767174946131E-4 1.0645215374884566E-4 30-31 1.0645215374884566E-4 6.564549481178816E-4 0.0 0.0015258142037334545 1.0645215374884566E-4 32-33 1.419362049984609E-4 7.096810249923044E-4 0.0 0.003725825381209598 1.0645215374884566E-4 34-35 1.419362049984609E-4 7.895201403039386E-4 0.0 0.006449226314617566 1.0645215374884566E-4 36-37 1.419362049984609E-4 8.693592556155729E-4 0.0 0.010192793721451971 1.0645215374884566E-4 38-39 1.419362049984609E-4 8.871012812403805E-4 0.0 0.015506530396081852 1.1532316656124946E-4 40-41 1.419362049984609E-4 0.0010645215374884567 0.0 0.021689626326327302 1.2419417937365327E-4 42-43 1.596782306232685E-4 0.0011088766015504756 0.0 0.027961432384696793 1.2419417937365327E-4 44-45 1.596782306232685E-4 0.0012064577424869176 0.0 0.033975979071506575 1.2419417937365327E-4 46-47 1.596782306232685E-4 0.001277425844986148 0.0 0.040496173488623374 1.419362049984609E-4 48-49 1.596782306232685E-4 0.0013129098962357632 0.0 0.04757524171292161 1.596782306232685E-4 50-51 1.774202562480761E-4 0.0014903301524838391 0.0 0.05511560260346484 1.774202562480761E-4 52-53 1.774202562480761E-4 0.001499201165296243 0.0 0.06192854044339097 1.9516228187288373E-4 54-55 1.774202562480761E-4 0.0015169431909210507 0.0 0.06837776675800852 2.1290430749769132E-4 56-57 1.862912690604799E-4 0.0015612982549830696 0.0 0.07496005826481214 2.2177532031009514E-4 58-59 1.951622818728837E-4 0.0015612982549830696 0.0 0.0813915425538049 2.3951734593490273E-4 60-61 2.3064633312249892E-4 0.0016145243318574924 0.0 0.08798270507342093 2.6613038437211416E-4 62-63 2.4838835874730654E-4 0.0016500083831071078 0.0 0.09428112417022763 2.6613038437211416E-4 64-65 2.4838835874730654E-4 0.0017919445881055685 0.0 0.09994083034454126 2.6613038437211416E-4 66-67 2.4838835874730654E-4 0.0018274286393551837 0.0 0.10585779589041461 2.75001397184518E-4 68-69 2.4838835874730654E-4 0.001907267754666818 0.0 0.1114376629494166 2.838724099969218E-4 70-71 2.572593715597103E-4 0.0019338807931040295 0.0 0.11707962709810542 3.0161443562172935E-4 72-73 2.838724099969218E-4 0.0019516228187288372 0.0 0.1217369088246174 3.370984868713446E-4 74-75 2.838724099969218E-4 0.0019693648443536447 0.0 0.1254095081289526 3.725825381209598E-4 76-77 2.838724099969218E-4 0.0020758169981024907 0.0 0.12896678426672653 3.725825381209598E-4 78-79 2.838724099969218E-4 0.002146785100601721 0.0 0.13125550557232668 3.725825381209598E-4 80-81 2.838724099969218E-4 0.0021645271262265287 0.0 0.13194744457169422 3.725825381209598E-4 82-83 2.838724099969218E-4 0.0021911401646637395 0.0 0.13255954445575008 3.725825381209598E-4 84-85 2.838724099969218E-4 0.002235495228725759 0.0 0.13280793281449738 3.725825381209598E-4 86-87 2.838724099969218E-4 0.0022887213056001815 0.0 0.13293212699387102 3.814535509333636E-4 88 3.19356461246537E-4 0.00244839953622345 0.0 0.1329409980066834 3.903245637457674E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6425 0.0 49.38606 1 GTATCAA 11315 0.0 35.818268 1 TCAACGC 13775 0.0 28.84657 4 ATCAACG 13920 0.0 28.51613 3 CAACGCA 14180 0.0 28.02267 5 TATCAAC 14790 0.0 27.26159 2 AACGCAG 14625 0.0 27.197561 6 ACGCAGA 17185 0.0 23.073233 7 CGCAGAG 17465 0.0 22.727194 8 GTACATG 15245 0.0 21.3334 1 TACATGG 15285 0.0 21.113897 2 ACATGGG 15510 0.0 20.29682 3 GCAGAGT 21010 0.0 18.832918 9 CATGGGG 11435 0.0 18.705704 4 GAGTACT 12805 0.0 17.827154 12-13 AGAGTAC 18725 0.0 17.624084 10-11 CAGAGTA 20715 0.0 16.967588 10-11 TATACCG 375 6.184564E-11 16.678343 5 GTGGTAT 3180 0.0 15.734284 1 TGGTATC 2955 0.0 15.521299 2 >>END_MODULE