##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139760_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10485954 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.293129456795253 33.0 32.0 33.0 25.0 34.0 2 30.853035880187917 32.0 31.0 33.0 25.0 33.0 3 30.93306054937872 33.0 31.0 33.0 27.0 33.0 4 32.4566847232021 33.0 33.0 33.0 32.0 34.0 5 32.49769682377016 33.0 33.0 33.0 32.0 34.0 6 36.84975625489107 38.0 37.0 38.0 35.0 38.0 7 36.837276417577264 38.0 37.0 38.0 35.0 38.0 8 37.279069315009394 38.0 38.0 38.0 36.0 38.0 9 37.3133248534182 38.0 38.0 38.0 37.0 38.0 10-11 37.35369795633282 38.0 38.0 38.0 37.0 38.0 12-13 37.38606172600032 38.0 38.0 38.0 37.0 38.0 14-15 37.40284493904894 38.0 38.0 38.0 37.0 38.0 16-17 37.358374068778105 38.0 38.0 38.0 37.0 38.0 18-19 37.34475470710629 38.0 38.0 38.0 37.0 38.0 20-21 37.40439235130794 38.0 38.0 38.0 37.0 38.0 22-23 37.42639429802115 38.0 38.0 38.0 37.0 38.0 24-25 37.429280490331365 38.0 38.0 38.0 37.0 38.0 26-27 37.33123603478132 38.0 38.0 38.0 37.0 38.0 28-29 37.2382843507651 38.0 38.0 38.0 37.0 38.0 30-31 37.32507478741244 38.0 38.0 38.0 37.0 38.0 32-33 37.34620582773809 38.0 38.0 38.0 37.0 38.0 34-35 37.30911436751781 38.0 38.0 38.0 37.0 38.0 36-37 37.317426698816135 38.0 38.0 38.0 37.0 38.0 38-39 37.30967388086114 38.0 38.0 38.0 37.0 38.0 40-41 37.28541178041729 38.0 38.0 38.0 37.0 38.0 42-43 37.28449506138449 38.0 38.0 38.0 37.0 38.0 44-45 37.22703962286681 38.0 38.0 38.0 37.0 38.0 46-47 37.21567333257369 38.0 38.0 38.0 37.0 38.0 48-49 37.203156545386875 38.0 38.0 38.0 37.0 38.0 50-51 37.20591683914493 38.0 38.0 38.0 37.0 38.0 52-53 37.189032765793726 38.0 38.0 38.0 36.5 38.0 54-55 37.135311257037614 38.0 38.0 38.0 36.0 38.0 56-57 37.137013163154776 38.0 38.0 38.0 36.0 38.0 58-59 37.14839677166429 38.0 38.0 38.0 36.0 38.0 60-61 37.15879303834669 38.0 38.0 38.0 36.0 38.0 62-63 37.082322650510136 38.0 38.0 38.0 36.0 38.0 64-65 37.11286928852903 38.0 38.0 38.0 36.0 38.0 66-67 37.13187467268696 38.0 38.0 38.0 36.0 38.0 68-69 37.09932839969484 38.0 38.0 38.0 36.0 38.0 70-71 37.048090351790336 38.0 38.0 38.0 36.0 38.0 72-73 37.05978425864186 38.0 38.0 38.0 36.0 38.0 74-75 37.081248820997246 38.0 38.0 38.0 36.0 38.0 76-77 37.01837981184952 38.0 38.0 38.0 36.0 38.0 78-79 37.04829274862688 38.0 38.0 38.0 36.0 38.0 80-81 37.028958148039095 38.0 38.0 38.0 36.0 38.0 82-83 36.97293900459937 38.0 38.0 38.0 36.0 38.0 84-85 37.00975463193698 38.0 38.0 38.0 36.0 38.0 86-87 37.03761864392917 38.0 38.0 38.0 36.0 38.0 88-89 36.94569206748672 38.0 38.0 38.0 36.0 38.0 90-91 36.91026015231483 38.0 38.0 38.0 35.5 38.0 92-93 36.969922413956695 38.0 38.0 38.0 36.0 38.0 94-95 36.95412293312226 38.0 38.0 38.0 36.0 38.0 96-97 36.89798680578639 38.0 38.0 38.0 35.0 38.0 98-99 36.90946843746603 38.0 38.0 38.0 35.0 38.0 100 35.344079076015646 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 13.0 19 24.0 20 63.0 21 199.0 22 595.0 23 1708.0 24 4192.0 25 8638.0 26 15175.0 27 24446.0 28 37151.0 29 53473.0 30 74549.0 31 100689.0 32 134400.0 33 184550.0 34 278093.0 35 516240.0 36 1548695.0 37 7503061.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17070320926451 20.38512661795007 12.807542356184282 25.63662781660114 2 14.766399757084434 20.464387197037407 40.004537501044254 24.764675544833906 3 18.051194960420386 24.873807380806745 30.89230603147792 26.18269162729495 4 12.753706198047137 17.334217182843172 38.21959635886045 31.69248026024924 5 13.476713563604603 36.98918492179616 35.73539232005658 13.798709194542658 6 30.899633011879384 37.53110129432882 18.24154688515948 13.327718808632316 7 27.00662286896767 32.05911268413825 22.79474446685223 18.139519980041843 8 24.73659525876234 36.65006541131117 21.066685968677717 17.546653361248772 9 25.46866026686747 16.257643319816204 20.80552708890388 37.46816932441245 10-11 24.37834936144103 26.45586181285937 28.933957749576244 20.231831076123356 12-13 24.997320224750176 23.786953480818244 29.044186156071255 22.171540138360324 14-15 22.053644332218127 25.344150851701237 26.120165127560163 26.48203968852047 16-17 22.169256130629602 28.589558947140148 26.90672684621733 22.334458076012922 18-19 22.249654156407704 27.843155710963448 28.28464629923038 21.62254383339847 20-21 22.715556590824722 27.062358304486594 28.190429233246224 22.031655871442457 22-23 22.441050860038512 27.165493913974547 28.042420234243444 22.3510349917435 24-25 22.387000672114606 27.203292684403994 28.19483579067984 22.21487085280156 26-27 22.452348866277696 27.34301433387614 28.101639917830507 22.102996882015656 28-29 22.37388620108724 27.26565710002476 28.08276067674484 22.27769602214316 30-31 22.44362046440699 27.30993657133499 28.176996812104242 22.06944615215377 32-33 22.327349783483278 27.42645765380105 28.085018865698586 22.161173697017087 34-35 22.5638193262329 27.239489805134788 28.14734005863453 22.049350809997783 36-37 22.297930919478603 27.375777642640482 28.085917463311983 22.240373974568932 38-39 22.157615832632903 27.24960912703665 28.311190406163213 22.281584634167235 40-41 22.387026154146714 27.097804790782654 28.279420010679658 22.235749044390975 42-43 22.36571605013839 27.162436798551585 28.14013095892733 22.331716192382693 44-45 22.27459178137611 27.28554960642966 28.116022394038925 22.323836218155304 46-47 22.475495959277165 27.160792483493296 27.87740893134097 22.48630262588857 48-49 22.321107564412003 27.24844222897057 27.90726847445317 22.52318173216426 50-51 22.220806442036 27.319915898529967 27.998957320882123 22.460320338551902 52-53 22.39594412850047 27.286082254089184 28.00838498258655 22.309588634823797 54-55 22.336450551622853 27.225608148518965 27.908091357828102 22.529849942030076 56-57 22.432043329370455 27.33585776902951 27.748306584778938 22.4837923168211 58-59 22.231266576890825 27.488707455492218 27.972871434962563 22.307154532654398 60-61 22.415920469501234 27.63764688009278 27.713775167754374 22.232657482651614 62-63 22.23298099153146 27.837222710404415 27.676345715760004 22.253450582304122 64-65 22.211438387997546 27.80682592232559 27.65475490631488 22.326980783361982 66-67 22.22556841158531 27.84557533361908 27.555880571412267 22.372975683383338 68-69 22.25398546096605 27.762388190623895 27.579734653022147 22.40389169538791 70-71 22.340364223309216 27.494102358707416 27.621872902360607 22.54366051562276 72-73 22.39920004513779 27.37422668043609 27.61061440919623 22.615958865229885 74-75 22.30589193218516 27.450569994322855 27.624154831860785 22.619383241631198 76-77 22.528567177970558 27.34852342234277 27.49269682952404 22.630212570162634 78-79 22.480271241108806 27.393876628537594 27.47024543787151 22.65560669248209 80-81 22.50040637883505 27.427573166228015 27.411293760452395 22.66072669448454 82-83 22.522171711472126 27.40050636141055 27.491658775213807 22.585663151903518 84-85 22.54710489410242 27.45187823716132 27.471359954047454 22.529656914688807 86-87 22.519925843970555 27.420629345794893 27.52188456065474 22.537560249579812 88-89 22.52307480404141 27.406750193479063 27.501745814041445 22.56842918843808 90-91 22.64252170877467 27.416093410903187 27.480404771338137 22.460980108984007 92-93 22.625144796262816 27.41811301620724 27.51915942070972 22.43758276682022 94-95 22.54219346937654 27.48606622953161 27.52336232628766 22.448377974804195 96-97 22.641762296911892 27.552419170485326 27.574049105031378 22.2317694275714 98-99 23.689852476958002 29.470700711837118 27.806640798125887 19.03280601307899 100 30.130484946514773 40.66225116644017 29.20726388704505 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1109.0 1 1061.0 2 1540.5 3 2281.5 4 2829.5 5 3671.0 6 4547.5 7 5643.5 8 7074.0 9 8217.0 10 8594.5 11 8825.0 12 9769.0 13 11699.0 14 15158.5 15 18965.5 16 21595.0 17 23044.0 18 23428.5 19 23111.0 20 23014.0 21 24316.5 22 27824.0 23 34237.5 24 44530.5 25 58445.0 26 76640.0 27 97946.5 28 120386.0 29 145284.5 30 170023.0 31 194029.5 32 218724.0 33 243488.5 34 267890.5 35 290245.5 36 314665.5 37 338751.5 38 359274.5 39 377597.0 40 395826.0 41 414061.0 42 429951.5 43 454775.5 44 474834.5 45 478663.5 46 476762.5 47 472797.0 48 469202.0 49 461903.0 50 453142.5 51 441381.0 52 423559.0 53 403721.0 54 381286.5 55 354744.5 56 326200.5 57 295223.5 58 262228.0 59 227342.0 60 191365.5 61 157149.5 62 125693.5 63 97816.5 64 74488.5 65 55991.0 66 41498.5 67 31593.0 68 24137.0 69 17816.0 70 13207.5 71 9648.0 72 6805.0 73 4631.0 74 3075.0 75 2066.0 76 1421.5 77 918.5 78 575.5 79 383.5 80 248.0 81 144.5 82 102.5 83 72.0 84 46.0 85 28.5 86 20.0 87 17.5 88 9.5 89 2.5 90 3.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.7219400352128194E-5 3 0.0 4 5.7219400352128194E-5 5 0.003890919223944717 6 5.340477366198631E-4 7 1.4304850088032046E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0010735928323316155 30-31 0.0 32-33 0.0 34-35 9.618839998676448E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.912493989930988E-6 44-45 5.001974029050565E-6 46-47 3.5381964225700334E-5 48-49 1.2258357761090635E-4 50-51 5.674552351330726E-4 52-53 2.3942759316609107E-4 54-55 3.886354180682488E-4 56-57 5.726876358012069E-4 58-59 3.909802463925377E-4 60-61 5.951323046741962E-5 62-63 4.262203083594644E-4 64-65 9.936746535843142E-5 66-67 1.5632895833716013E-4 68-69 6.612718563771785E-4 70-71 1.087358993861E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.001160480428751226 90-91 0.0 92-93 3.247826294817404E-5 94-95 9.20403444386364E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 178.0 20-21 316.0 22-23 519.0 24-25 830.0 26-27 3173.0 28-29 11302.0 30-31 27370.0 32-33 35137.0 34-35 50055.0 36-37 79459.0 38-39 86272.0 40-41 82169.0 42-43 88377.0 44-45 102206.0 46-47 104330.0 48-49 98765.0 50-51 88781.0 52-53 83915.0 54-55 91152.0 56-57 92523.0 58-59 93999.0 60-61 92475.0 62-63 91842.0 64-65 98564.0 66-67 107868.0 68-69 108825.0 70-71 118544.0 72-73 94095.0 74-75 90389.0 76-77 94492.0 78-79 97240.0 80-81 95767.0 82-83 89392.0 84-85 87283.0 86-87 90410.0 88-89 93947.0 90-91 93853.0 92-93 90791.0 94-95 103872.0 96-97 312757.0 98-99 2339131.0 100-101 4873589.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.08306547029426 #Duplication Level Percentage of deduplicated Percentage of total 1 90.96949807513852 79.21902756677095 2 6.482409908342124 11.290162529068828 3 1.4959354439580497 3.908119326165976 4 0.49048760541842656 1.7085265702008277 5 0.22327234391758322 0.9721620071540477 6 0.11256787602531247 0.5881653430658553 7 0.06291634752435264 0.38352638874304906 8 0.040423503196980425 0.28161620603530363 9 0.030137402024549557 0.23620116182475853 >10 0.08968631500574488 1.2106889516889228 >50 0.002330394054512383 0.13708792880038728 >100 3.014051526467761E-4 0.04582163998055436 >500 3.3380241181594406E-5 0.018894380500585537 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.536566725354699E-6 0.0 0.0 0.0 3 0.0 9.536566725354699E-6 0.0 0.0 0.0 4 0.0 9.536566725354699E-6 0.0 2.8609700176064094E-5 0.0 5 0.0 1.9073133450709398E-5 0.0 2.8609700176064094E-5 0.0 6 0.0 1.9073133450709398E-5 0.0 2.8609700176064094E-5 0.0 7 0.0 1.9073133450709398E-5 0.0 2.8609700176064094E-5 0.0 8 0.0 2.8609700176064094E-5 0.0 3.8146266901418796E-5 0.0 9 0.0 7.629253380283759E-5 0.0 5.721940035212819E-5 0.0 10-11 0.0 7.629253380283759E-5 0.0 6.67559670774829E-5 0.0 12-13 0.0 7.629253380283759E-5 0.0 9.536566725354698E-5 0.0 14-15 0.0 1.1920708406693372E-4 0.0 9.536566725354698E-5 1.9073133450709398E-5 16-17 0.0 1.335119341549658E-4 0.0 1.3828021751764312E-4 1.9073133450709398E-5 18-19 0.0 1.335119341549658E-4 0.0 1.7642648441906192E-4 1.9073133450709398E-5 20-21 0.0 1.335119341549658E-4 0.0 2.05036184595126E-4 1.9073133450709398E-5 22-23 0.0 1.4304850088032049E-4 0.0 2.574873015845769E-4 3.337798353874145E-5 24-25 0.0 1.6212163433102986E-4 0.0 3.0517013521135037E-4 4.768283362677349E-5 26-27 0.0 1.8119476778173925E-4 0.0 4.4821863609167083E-4 4.768283362677349E-5 28-29 0.0 1.859630511444166E-4 0.0 0.0012540585243841428 5.245111698945084E-5 30-31 0.0 2.3841416813386745E-4 0.0 0.003504688271567852 5.721940035212819E-5 32-33 0.0 2.479507348592221E-4 0.0 0.0077293873308999835 5.721940035212819E-5 34-35 0.0 3.0517013521135037E-4 0.0 0.013255827748243031 7.629253380283759E-5 36-37 0.0 3.576212522008012E-4 0.0 0.0221248348028229 7.629253380283759E-5 38-39 0.0 4.005358024648973E-4 0.0 0.04446901064032896 8.582910052819228E-5 40-41 0.0 4.4821863609167083E-4 0.0 0.06940236434376881 8.582910052819228E-5 42-43 0.0 4.768283362677349E-4 0.0 0.08342111743004021 8.582910052819228E-5 44-45 0.0 5.340477366198631E-4 0.0 0.10107807072203445 8.582910052819228E-5 46-47 0.0 5.721940035212819E-4 0.0 0.12023703327327204 9.059738389086963E-5 48-49 0.0 5.769622868839593E-4 0.0 0.13971070252644635 1.0490223397890168E-4 50-51 0.0 6.532548206867969E-4 0.0 0.15823548339044782 1.0490223397890168E-4 52-53 0.0 6.580231040494742E-4 0.0 0.20237071419538938 1.2874365079228842E-4 54-55 0.0 6.627913874121515E-4 0.0 0.25156509364813157 1.4304850088032049E-4 56-57 0.0 6.770962375001836E-4 0.0 0.3200805572864424 1.4304850088032049E-4 58-59 0.0 6.770962375001836E-4 0.0 0.37482045028997835 1.5258506760567518E-4 60-61 0.0 6.914010875882157E-4 0.0 0.40467467242370125 1.5258506760567518E-4 62-63 0.0 7.295473544896344E-4 0.0 0.42686149491023895 1.5258506760567518E-4 64-65 0.0 7.819984714790853E-4 0.0 0.4344430654568959 1.5258506760567518E-4 66-67 4.7682833626773495E-6 8.010716049297946E-4 0.0 0.4414190640164929 1.5258506760567518E-4 68-69 9.536566725354699E-6 8.153764550178267E-4 0.0 0.4483712211592765 1.5735335096835252E-4 70-71 9.536566725354699E-6 8.249130217431814E-4 0.0 0.4547130380316374 1.7165820105638456E-4 72-73 9.536566725354699E-6 8.296813051058587E-4 0.0 0.45948132139431475 1.7165820105638456E-4 74-75 9.536566725354699E-6 8.439861551938909E-4 0.0 0.4631910458504777 1.7165820105638456E-4 76-77 9.536566725354699E-6 8.630592886446002E-4 0.0 0.46668142927195755 1.7165820105638456E-4 78-79 9.536566725354699E-6 8.678275720072775E-4 0.0 0.46912279035364834 1.7165820105638456E-4 80-81 9.536566725354699E-6 8.678275720072775E-4 0.0 0.46991432539185274 1.7642648441906192E-4 82-83 9.536566725354699E-6 8.678275720072775E-4 0.0 0.4705151290955501 1.9073133450709395E-4 84-85 9.536566725354699E-6 8.678275720072775E-4 0.0 0.4707630798304093 1.9073133450709395E-4 86-87 9.536566725354699E-6 8.678275720072775E-4 0.0 0.4708346040808495 1.9073133450709395E-4 88 9.536566725354699E-6 8.86900705457987E-4 0.0 0.47083937236421214 1.9073133450709395E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9260 0.0 42.407127 1 GTATCAA 15395 0.0 33.838318 1 TCAACGC 16985 0.0 29.908184 4 ATCAACG 17315 0.0 29.3623 3 CAACGCA 17720 0.0 28.64406 5 AACGCAG 18410 0.0 27.614952 6 TATCAAC 18945 0.0 27.166777 2 ACGCAGA 22095 0.0 23.028023 7 CGCAGAG 22425 0.0 22.651892 8 CTTATAC 12420 0.0 20.618681 1 GTACATG 24885 0.0 20.09456 1 TACATGG 24660 0.0 19.701925 2 ACATGGG 25480 0.0 18.592407 3 TATACCG 735 0.0 18.187986 5 TATACAC 16120 0.0 17.985247 3 GCAGAGT 28775 0.0 17.740229 9 GAGTACT 15010 0.0 17.477621 12-13 TATGCCG 8270 0.0 17.130531 42-43 TTATACA 16440 0.0 16.898254 2 CATGGGG 18660 0.0 16.857973 4 >>END_MODULE