##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139758_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9038214 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.18204702831776 33.0 32.0 33.0 25.0 34.0 2 30.825644092959074 32.0 31.0 33.0 25.0 33.0 3 30.902832683536815 33.0 31.0 33.0 27.0 33.0 4 32.47994271877165 33.0 33.0 33.0 32.0 34.0 5 32.48264856309001 33.0 33.0 33.0 32.0 34.0 6 36.8065592383628 38.0 37.0 38.0 35.0 38.0 7 36.786618019887555 38.0 37.0 38.0 34.0 38.0 8 37.22678197263309 38.0 38.0 38.0 36.0 38.0 9 37.271383704789464 38.0 38.0 38.0 37.0 38.0 10-11 37.317358495826724 38.0 38.0 38.0 37.0 38.0 12-13 37.346086018764325 38.0 38.0 38.0 37.0 38.0 14-15 37.36605063788045 38.0 38.0 38.0 37.0 38.0 16-17 37.31872071185745 38.0 38.0 38.0 37.0 38.0 18-19 37.3085495098921 38.0 38.0 38.0 37.0 38.0 20-21 37.37077865432481 38.0 38.0 38.0 37.0 38.0 22-23 37.390976542582166 38.0 38.0 38.0 37.0 38.0 24-25 37.39385303035937 38.0 38.0 38.0 37.0 38.0 26-27 37.299580073821375 38.0 38.0 38.0 37.0 38.0 28-29 37.20528567573808 38.0 38.0 38.0 36.5 38.0 30-31 37.28803241253067 38.0 38.0 38.0 37.0 38.0 32-33 37.31087186087817 38.0 38.0 38.0 37.0 38.0 34-35 37.26785512588002 38.0 38.0 38.0 37.0 38.0 36-37 37.27663232797443 38.0 38.0 38.0 37.0 38.0 38-39 37.26029044071724 38.0 38.0 38.0 37.0 38.0 40-41 37.24091500660013 38.0 38.0 38.0 37.0 38.0 42-43 37.240348694119135 38.0 38.0 38.0 37.0 38.0 44-45 37.18012696676564 38.0 38.0 38.0 36.5 38.0 46-47 37.163026990334416 38.0 38.0 38.0 36.5 38.0 48-49 37.14642628611328 38.0 38.0 38.0 36.0 38.0 50-51 37.143706303570305 38.0 38.0 38.0 36.0 38.0 52-53 37.12572434583359 38.0 38.0 38.0 36.0 38.0 54-55 37.0729132131526 38.0 38.0 38.0 36.0 38.0 56-57 37.069820778160675 38.0 38.0 38.0 36.0 38.0 58-59 37.08037578429548 38.0 38.0 38.0 36.0 38.0 60-61 37.08752599586238 38.0 38.0 38.0 36.0 38.0 62-63 37.01317507654681 38.0 38.0 38.0 36.0 38.0 64-65 37.04009904748423 38.0 38.0 38.0 36.0 38.0 66-67 37.053735895996695 38.0 38.0 38.0 36.0 38.0 68-69 37.02105661386044 38.0 38.0 38.0 36.0 38.0 70-71 36.9706485404206 38.0 38.0 38.0 36.0 38.0 72-73 36.98223081521457 38.0 38.0 38.0 36.0 38.0 74-75 37.002399860368655 38.0 38.0 38.0 36.0 38.0 76-77 36.9383266108584 38.0 38.0 38.0 36.0 38.0 78-79 36.96305854127746 38.0 38.0 38.0 36.0 38.0 80-81 36.93837116607507 38.0 38.0 38.0 36.0 38.0 82-83 36.88422391782731 38.0 38.0 38.0 35.0 38.0 84-85 36.91578730217154 38.0 38.0 38.0 35.5 38.0 86-87 36.93767250200479 38.0 38.0 38.0 36.0 38.0 88-89 36.84301433585198 38.0 38.0 38.0 35.5 38.0 90-91 36.799875099441934 38.0 38.0 38.0 35.0 38.0 92-93 36.85448882499637 38.0 38.0 38.0 35.0 38.0 94-95 36.833621584709554 38.0 38.0 38.0 35.0 38.0 96-97 36.776951051514715 38.0 38.0 38.0 35.0 38.0 98-99 36.78435705437555 38.0 38.0 38.0 35.0 38.0 100 35.15401702455846 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 10.0 19 20.0 20 65.0 21 180.0 22 635.0 23 1681.0 24 4175.0 25 8465.0 26 14517.0 27 23619.0 28 35842.0 29 52053.0 30 70904.0 31 96184.0 32 126505.0 33 173778.0 34 259596.0 35 472687.0 36 1350794.0 37 6346503.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.736422040903214 20.79835684350913 12.865495329055054 25.599725786532606 2 14.534995713198425 20.70147320148786 40.16778991673902 24.595741168574698 3 17.739013482088385 25.24753231114023 31.32135397546462 25.692100231306757 4 12.434175303054996 17.63764975170418 38.76302511636429 31.165149828876533 5 13.135449475287054 37.21011775530892 36.12104766884852 13.533385100555506 6 30.265640057666545 38.18173369166546 18.44677628325203 13.105849967415969 7 26.441206757048164 32.42086621826652 23.1758467138449 17.962080310840413 8 24.44320304874392 36.98135494468266 21.307826966699395 17.26761503987403 9 25.27597819657733 16.2915372439732 21.078898994867792 37.35358556458168 10-11 23.937494730706753 26.75773111811692 29.34667180927559 19.958102341900734 12-13 24.563879545228737 24.12192829247017 29.42390498830853 21.89028717399256 14-15 21.689589337008396 25.757168396322548 26.46029956803413 26.09294269863493 16-17 21.761959829674314 29.055104249578513 27.249443308158007 21.93349261258917 18-19 21.792081931231102 28.224021914063997 28.683177893331578 21.30071826137332 20-21 22.236776716605277 27.471659166811563 28.64277840048369 21.64878571609947 22-23 21.994234950310844 27.600356571581834 28.502883437683764 21.902525040423562 24-25 21.981975751526733 27.587684112569395 28.62103821176085 21.80930192414302 26-27 22.036644448017643 27.796087668954115 28.50575610671636 21.66151177631188 28-29 21.796098869641657 27.607380776607055 28.57757914216049 22.01894121159079 30-31 22.115741311848215 27.649017210550014 28.58958411541191 21.64565736218986 32-33 22.026032110601207 27.60459935050223 28.68181272962323 21.687555809273334 34-35 21.815497115184616 27.673561581014155 28.80135858223179 21.709582721569443 36-37 21.98741087663035 27.688717169312927 28.59659438665941 21.72727756739731 38-39 21.712071551589844 27.643950975202536 28.819798544274988 21.824178928932632 40-41 21.899363775243003 27.56212412439565 28.755710660042144 21.7828014403192 42-43 21.909344507771525 27.579859771339176 28.705699072810752 21.805096648078543 44-45 21.832617778190098 27.757830635729242 28.619627444979045 21.78992414110161 46-47 22.02730050814477 27.59863700303405 28.356580561163945 22.017481927657233 48-49 21.89161642922913 27.64926648779013 28.432190088252096 22.026926994728633 50-51 21.783548799218693 27.81655252471531 28.47389095991287 21.92600771615313 52-53 21.920154497632378 27.82952245155891 28.476462395280056 21.773860655528658 54-55 21.872282793727436 27.828600960437537 28.321202197519867 21.97791404831516 56-57 21.959735302045065 28.022456428372493 28.1516464048864 21.86616186469604 58-59 21.694412011573803 28.094150003176445 28.357548094230616 21.853889891019136 60-61 22.01288856523791 28.23807743571602 28.202084240777776 21.5469497582683 62-63 21.691006312103543 28.392311210324923 28.15018633692651 21.766496140645028 64-65 21.678499127599142 28.36583227029548 28.109941129304794 21.84572747280058 66-67 21.702352684260088 28.3411960284665 28.25329277671564 21.70315851055778 68-69 21.710247526688303 28.41162788878896 28.094562233605757 21.78356235091698 70-71 21.757942983789242 28.164522741323932 27.9989625882438 22.078571686643034 72-73 21.821362260142806 28.017974016697742 28.048850145027814 22.111813578131635 74-75 21.803058818035954 28.08931572178135 28.17236873324573 21.935256726936966 76-77 21.95337811490133 27.778190453374485 28.122303564687485 22.1461278670367 78-79 21.89016113844186 27.817354211250883 27.903585943378022 22.38889870692923 80-81 22.113389304861826 28.050389534552263 27.847214006569082 21.989007154016832 82-83 22.15699637475357 27.813865298399058 27.926630955548404 22.10250737129897 84-85 21.963918751530596 27.804046753382078 27.95103084067545 22.281003654411876 86-87 21.896940431939257 28.023608894398805 27.993439034035315 22.08601163962662 88-89 22.155080383501804 27.970458649636658 27.93231917540333 21.9421417914582 90-91 22.203561971331666 28.027574027640206 27.91160098407861 21.857263016949517 92-93 22.011959923970092 27.775931319605057 27.968457769570097 22.24365098685475 94-95 22.12080314794346 28.062833642475237 27.966928955689223 21.849434253892074 96-97 22.38011666287094 27.96505851738485 28.037638988307855 21.617185831436355 98-99 23.120926950113436 29.96208622982236 28.41032583478781 18.506660985276394 100 22.014071645677653 30.879137221281233 22.48215557455336 24.624635558487757 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1224.0 1 1082.5 2 1416.0 3 2087.5 4 2626.0 5 3478.0 6 4269.0 7 5221.5 8 6626.0 9 7701.5 10 8029.5 11 8411.0 12 9464.5 13 11414.0 14 14703.5 15 18179.5 16 20624.5 17 22066.5 18 22355.0 19 21856.5 20 21679.5 21 22776.5 22 26231.5 23 32679.5 24 42235.0 25 54648.0 26 70700.5 27 89428.0 28 109636.0 29 132080.5 30 154669.0 31 176792.0 32 199172.5 33 220263.5 34 240421.0 35 259598.0 36 279333.0 37 297623.0 38 313460.0 39 328431.0 40 342699.0 41 355760.0 42 364594.5 43 372000.0 44 377230.5 45 383089.5 46 400394.0 47 405888.5 48 396495.5 49 384999.5 50 366354.5 51 346896.5 52 327972.5 53 309129.5 54 288901.0 55 267886.5 56 245908.0 57 221706.5 58 196306.5 59 169362.5 60 140803.5 61 114695.0 62 91415.5 63 70727.5 64 53283.0 65 39527.0 66 29611.5 67 22780.5 68 17540.5 69 12883.0 70 9318.5 71 6850.0 72 4981.0 73 3510.0 74 2416.0 75 1655.0 76 1109.0 77 718.0 78 467.5 79 296.5 80 185.5 81 128.0 82 98.0 83 67.0 84 43.5 85 32.0 86 22.0 87 13.5 88 7.0 89 3.0 90 3.5 91 3.0 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.744892962260022E-5 3 0.0 4 3.319239840968581E-5 5 0.0035405224970331524 6 4.8682184334205853E-4 7 7.744892962260022E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0010129597965666752 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.694425834744459E-6 44-45 5.73376774651288E-6 46-47 2.311613470950618E-5 48-49 8.736093958437741E-5 50-51 3.93045211638714E-4 52-53 1.712071895684522E-4 54-55 3.2679154104255174E-4 56-57 4.3675390616539767E-4 58-59 2.9478264201890733E-4 60-61 1.2102619563594061E-5 62-63 3.4762524388655267E-4 64-65 5.5310509513038894E-5 66-67 9.917852289086798E-5 68-69 4.3795999485709837E-4 70-71 6.316433882917824E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.596028305969567E-4 90-91 0.0 92-93 2.770263630060657E-5 94-95 9.084521973152582E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 288.0 22-23 445.0 24-25 639.0 26-27 2310.0 28-29 7886.0 30-31 17399.0 32-33 23403.0 34-35 33294.0 36-37 51293.0 38-39 54953.0 40-41 52072.0 42-43 57480.0 44-45 67201.0 46-47 68324.0 48-49 63312.0 50-51 55497.0 52-53 53145.0 54-55 57472.0 56-57 59417.0 58-59 33611.0 60-61 64893.0 62-63 62012.0 64-65 67203.0 66-67 73534.0 68-69 74686.0 70-71 85176.0 72-73 62609.0 74-75 59279.0 76-77 62767.0 78-79 64340.0 80-81 62918.0 82-83 58361.0 84-85 57957.0 86-87 60565.0 88-89 63035.0 90-91 64151.0 92-93 62922.0 94-95 76416.0 96-97 297848.0 98-99 618325.0 100-101 6179661.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.51379846257538 #Duplication Level Percentage of deduplicated Percentage of total 1 90.39212517281834 78.20166099805093 2 6.9015630348955135 11.941608669554212 3 1.5551126297816706 4.036161019186111 4 0.5450531335927328 1.8861846780414744 5 0.24447041322405724 1.0575032029864306 6 0.1320943505201619 0.6856790411367647 7 0.06649930824652825 0.40271754260785764 8 0.04526170092176933 0.3132609337295451 9 0.02991338446702235 0.23291284636021542 >10 0.08641444841789524 1.1309748077023116 >50 0.0013042920488230364 0.07156535269233967 >100 1.494031514271595E-4 0.02025435374284947 >500 3.8727914049079336E-5 0.01951655420901319 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2128265606457203E-5 0.0 0.0 0.0 3 0.0 2.2128265606457203E-5 0.0 1.1064132803228602E-5 0.0 4 0.0 5.532066401614301E-5 0.0 3.319239840968581E-5 0.0 5 0.0 6.638479681937161E-5 0.0 3.319239840968581E-5 0.0 6 5.532066401614301E-5 6.638479681937161E-5 0.0 3.319239840968581E-5 0.0 7 5.532066401614301E-5 6.638479681937161E-5 0.0 3.319239840968581E-5 0.0 8 5.532066401614301E-5 6.638479681937161E-5 0.0 3.319239840968581E-5 1.1064132803228602E-5 9 5.532066401614301E-5 1.5489785924520044E-4 0.0 7.744892962260022E-5 1.1064132803228602E-5 10-11 6.638479681937161E-5 1.5489785924520044E-4 0.0 1.0510926163067173E-4 1.1064132803228602E-5 12-13 6.638479681937161E-5 1.6042992564681475E-4 0.0 1.5489785924520044E-4 1.1064132803228602E-5 14-15 6.638479681937161E-5 2.1575058966295774E-4 0.0 1.5489785924520044E-4 3.319239840968581E-5 16-17 1.2723752723712894E-4 2.2128265606457205E-4 0.0 1.7149405845004332E-4 5.532066401614301E-5 18-19 1.3276959363874323E-4 2.3234678886780065E-4 0.0 2.1575058966295774E-4 5.532066401614301E-5 20-21 1.3276959363874323E-4 2.6553918727748645E-4 0.0 2.8213538648232936E-4 5.532066401614301E-5 22-23 1.3276959363874323E-4 2.7107125367910074E-4 0.0 3.2085985129362945E-4 7.74489296226002E-5 24-25 1.383016600403575E-4 2.8213538648232936E-4 0.0 3.4852018330170097E-4 9.957719522905742E-5 26-27 1.4383372644197182E-4 2.8766745288394364E-4 0.0 4.149049801210726E-4 9.957719522905742E-5 28-29 1.4383372644197182E-4 3.0426365208878654E-4 0.0 8.46406159446988E-4 9.957719522905742E-5 30-31 1.4383372644197182E-4 3.5405224970331525E-4 0.0 0.002445173349513521 9.957719522905742E-5 32-33 1.4383372644197182E-4 3.5405224970331525E-4 0.0 0.004635871644552784 9.957719522905742E-5 34-35 1.4936579284358613E-4 4.3703324572752977E-4 0.0 0.007595527169416436 9.957719522905742E-5 36-37 1.5489785924520044E-4 5.476745737598159E-4 0.0 0.013138657703833965 9.957719522905742E-5 38-39 1.5489785924520044E-4 5.86399038571116E-4 0.0 0.02861737949555078 1.1064132803228603E-4 40-41 1.5489785924520044E-4 6.583159017921019E-4 0.0 0.04592721526620193 1.2170546083551463E-4 42-43 1.6042992564681475E-4 7.081044994066305E-4 0.0 0.05472320084476867 1.2170546083551463E-4 44-45 1.6596199204842903E-4 7.744892962260021E-4 0.0 0.06668352840505878 1.2170546083551463E-4 46-47 1.6596199204842903E-4 8.076816946356879E-4 0.0 0.0794902621247959 1.2170546083551463E-4 48-49 1.6596199204842903E-4 8.187458274389165E-4 0.0 0.09110760156818593 1.2170546083551463E-4 50-51 1.6596199204842903E-4 8.851306242582882E-4 0.0 0.1030900573940825 1.2170546083551463E-4 52-53 1.6596199204842903E-4 8.961947570615168E-4 0.0 0.13498242019938894 1.3830166004035754E-4 54-55 1.6596199204842903E-4 9.18323022667974E-4 0.0 0.17075829361862865 1.5489785924520044E-4 56-57 1.6596199204842903E-4 9.293871554712026E-4 0.0 0.215473986342877 1.6042992564681475E-4 58-59 1.6596199204842903E-4 9.404512882744312E-4 0.0 0.405948564616859 1.6596199204842903E-4 60-61 1.7702612485165765E-4 9.791757530857315E-4 0.0 0.5745106278740468 1.6596199204842903E-4 62-63 1.8809025765488625E-4 0.0010013040186921886 0.0 0.5812099602864017 1.6596199204842903E-4 64-65 1.8809025765488625E-4 0.0010953491475196317 0.0 0.5870518224065064 1.6596199204842903E-4 66-67 1.9915439045811484E-4 0.0011064132803228603 0.0 0.5923736702848594 1.6596199204842903E-4 68-69 2.1021852326134346E-4 0.0011064132803228603 0.0 0.5976125371671881 1.6596199204842903E-4 70-71 2.1575058966295774E-4 0.0011174774131260889 0.0 0.6017007342379811 1.7149405845004332E-4 72-73 2.3234678886780065E-4 0.0011340736123309318 0.0 0.6051859360709981 2.1021852326134346E-4 74-75 2.3234678886780065E-4 0.0011617339443390031 0.0 0.6076532376861181 2.1021852326134346E-4 76-77 2.3787885526941496E-4 0.0011893942763470749 0.0 0.6102422447620736 2.1021852326134346E-4 78-79 2.4341092167102927E-4 0.0012059904755519176 0.0 0.6119848456785821 2.1021852326134346E-4 80-81 2.4341092167102927E-4 0.0012059904755519176 0.0 0.6125878409163581 2.1575058966295774E-4 82-83 2.4894298807264355E-4 0.0012059904755519176 0.0 0.6130746627597001 2.3234678886780065E-4 84-85 2.6553918727748645E-4 0.0012059904755519176 0.0 0.613318073681371 2.3787885526941496E-4 86-87 2.6553918727748645E-4 0.0012059904755519176 0.0 0.6134121188101986 2.4341092167102927E-4 88 2.766033200807151E-4 0.0013055676707809751 0.0 0.6134287150094034 2.4341092167102927E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8290 0.0 44.098858 1 GTATCAA 13790 0.0 32.825478 1 TCAACGC 14985 0.0 29.77606 4 ATCAACG 15225 0.0 29.221735 3 CAACGCA 15670 0.0 28.501936 5 AACGCAG 16350 0.0 27.394728 6 TATCAAC 16960 0.0 26.435863 2 ACGCAGA 19635 0.0 22.8115 7 CGCAGAG 20065 0.0 22.301157 8 GTACATG 20075 0.0 21.861414 1 TACATGG 19815 0.0 21.626106 2 CTTATAC 12675 0.0 21.42785 1 ACATGGG 20255 0.0 20.368702 3 TATACAC 16660 0.0 19.122871 3 GCAGAGT 25180 0.0 17.753838 9 GAGTACT 14625 0.0 17.65632 12-13 CATGGGG 14925 0.0 17.330877 4 TTATACA 16840 0.0 17.075357 2 TATGCCG 8885 0.0 16.599018 42-43 CAGAGTA 24625 0.0 16.377092 10-11 >>END_MODULE