##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139757_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6598155 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.19483264639888 33.0 32.0 33.0 25.0 34.0 2 30.8839915097478 32.0 31.0 33.0 25.0 33.0 3 30.919673454170145 33.0 31.0 33.0 27.0 33.0 4 32.49057910885695 33.0 33.0 33.0 32.0 34.0 5 32.498753969859756 33.0 33.0 33.0 32.0 34.0 6 36.81502435150432 38.0 37.0 38.0 35.0 38.0 7 36.78525360498503 38.0 37.0 38.0 34.0 38.0 8 37.228433099858975 38.0 38.0 38.0 36.0 38.0 9 37.27797043264367 38.0 38.0 38.0 37.0 38.0 10-11 37.31873258509387 38.0 38.0 38.0 37.0 38.0 12-13 37.35033096373152 38.0 38.0 38.0 37.0 38.0 14-15 37.3718737283377 38.0 38.0 38.0 37.0 38.0 16-17 37.32277507879097 38.0 38.0 38.0 37.0 38.0 18-19 37.31305031482286 38.0 38.0 38.0 37.0 38.0 20-21 37.37797229281273 38.0 38.0 38.0 37.0 38.0 22-23 37.39961556739827 38.0 38.0 38.0 37.0 38.0 24-25 37.40396491310511 38.0 38.0 38.0 37.0 38.0 26-27 37.31269900527997 38.0 38.0 38.0 37.0 38.0 28-29 37.22372285347362 38.0 38.0 38.0 37.0 38.0 30-31 37.30678365754007 38.0 38.0 38.0 37.0 38.0 32-33 37.32313620333892 38.0 38.0 38.0 37.0 38.0 34-35 37.28024664482588 38.0 38.0 38.0 37.0 38.0 36-37 37.29037401735452 38.0 38.0 38.0 37.0 38.0 38-39 37.27266195717968 38.0 38.0 38.0 37.0 38.0 40-41 37.25821422261377 38.0 38.0 38.0 37.0 38.0 42-43 37.25642498588816 38.0 38.0 38.0 37.0 38.0 44-45 37.192875715051386 38.0 38.0 38.0 37.0 38.0 46-47 37.17359577933204 38.0 38.0 38.0 36.5 38.0 48-49 37.15484127160066 38.0 38.0 38.0 36.0 38.0 50-51 37.15439679014102 38.0 38.0 38.0 36.0 38.0 52-53 37.14064905775409 38.0 38.0 38.0 36.0 38.0 54-55 37.08981925074002 38.0 38.0 38.0 36.0 38.0 56-57 37.09346941291966 38.0 38.0 38.0 36.0 38.0 58-59 37.10992360778356 38.0 38.0 38.0 36.0 38.0 60-61 37.116942554483686 38.0 38.0 38.0 36.0 38.0 62-63 37.04603475378058 38.0 38.0 38.0 36.0 38.0 64-65 37.07796185129547 38.0 38.0 38.0 36.0 38.0 66-67 37.09404546932212 38.0 38.0 38.0 36.0 38.0 68-69 37.06253696395271 38.0 38.0 38.0 36.0 38.0 70-71 37.014664778719265 38.0 38.0 38.0 36.0 38.0 72-73 37.02562765619483 38.0 38.0 38.0 36.0 38.0 74-75 37.04725253576982 38.0 38.0 38.0 36.0 38.0 76-77 36.9852151781606 38.0 38.0 38.0 36.0 38.0 78-79 37.0121270824656 38.0 38.0 38.0 36.0 38.0 80-81 36.99032007943591 38.0 38.0 38.0 36.0 38.0 82-83 36.92674110033395 38.0 38.0 38.0 36.0 38.0 84-85 36.97870190835861 38.0 38.0 38.0 36.0 38.0 86-87 37.00613282371082 38.0 38.0 38.0 36.0 38.0 88-89 36.91315890852712 38.0 38.0 38.0 35.5 38.0 90-91 36.87573784797678 38.0 38.0 38.0 35.0 38.0 92-93 36.934239940727124 38.0 38.0 38.0 35.0 38.0 94-95 36.90268799147706 38.0 38.0 38.0 35.0 38.0 96-97 36.819536985456814 38.0 38.0 38.0 35.0 38.0 98-99 36.849804083782914 38.0 38.0 38.0 35.0 38.0 100 35.3033644511593 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 10.0 19 18.0 20 60.0 21 171.0 22 490.0 23 1322.0 24 2993.0 25 5910.0 26 10263.0 27 16422.0 28 25171.0 29 36008.0 30 50822.0 31 67952.0 32 90935.0 33 122064.0 34 182008.0 35 332722.0 36 951260.0 37 4701553.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.495554439081836 20.196039650478053 12.595248217115241 25.713157693324877 2 15.068297163856965 20.041690467526433 39.42430235379578 25.465710014820818 3 18.042664957097855 24.99709388457834 30.713100859255356 26.247140299068448 4 12.999594431895476 17.18435707452632 36.93963097546101 32.876417518117194 5 13.692805499480967 36.94113499545838 35.234990623473465 14.131068881587193 6 31.477649022305283 36.77244270832781 17.728647980645405 14.021260288721503 7 27.53899879845145 31.876925539150964 21.98779294566115 18.596282716736443 8 25.522270998483666 35.88237924086354 20.634237904383877 17.96111185626891 9 25.860911118335352 15.886986589432956 20.1999498344613 38.0521524577704 10-11 24.996805925292755 25.95341424989258 28.23681013859177 20.81296968622289 12-13 25.619631548516214 23.27205105063461 28.455189367330714 22.65312803351846 14-15 22.703808867781976 24.666721227373408 25.279665300375637 27.349804604468975 16-17 22.819545766960612 28.18793283880115 25.961886315189624 23.030635079048615 18-19 22.910995573762666 27.1059864462111 27.560590801519513 22.42242717850672 20-21 23.30393336731826 26.28381817676157 27.482624152520827 22.929624303399343 22-23 23.08068949560985 26.582216031924073 27.426401564344488 22.91069290812159 24-25 23.129367546225595 26.67676601634767 27.443993740313026 22.749872697113712 26-27 23.098612856889055 26.73295115197091 27.587485455219053 22.580950535920984 28-29 23.053434524117787 26.30956351787678 27.663940967610905 22.97306099039453 30-31 22.82117672063702 26.22092926164613 27.894268212146745 23.063625805570105 32-33 22.457173506568132 26.77729538985473 27.7312234436424 23.03430765993474 34-35 23.02381613213281 26.43541194158393 27.730457815017818 22.81031411126544 36-37 22.770197636640088 26.54584558552705 27.90889408864753 22.775062689185333 38-39 22.669500766374146 26.419781053511038 27.90192407520603 23.008794104908787 40-41 22.983070321205087 26.202523836879788 28.0620125150848 22.752393326830322 42-43 22.971244706220684 26.233766938446625 27.884755582134535 22.910232773198157 44-45 22.653471152226665 26.51512410562234 27.83342274510782 22.997981997043173 46-47 23.17100390163119 26.17608504279453 27.605133914499504 23.04777714107478 48-49 22.84978747705325 26.489231577886546 27.357605673601903 23.303375271458297 50-51 22.628455770222292 26.60049974435218 27.54243089533539 23.22861359009014 52-53 22.707240705312095 26.437191600518485 27.80829347012894 23.047274224040482 54-55 22.805521642798546 26.260021409097583 27.681007795428357 23.25344915267551 56-57 22.947344921945653 26.339674493444015 27.438927527968822 23.27405305664151 58-59 22.386717333108546 26.546487130953654 27.84868621034939 23.218109325588404 60-61 22.807034152885887 27.16702346303509 27.53535958583327 22.490582798245754 62-63 22.18553742469975 27.683432042758856 27.409706946051998 22.7213235864894 64-65 22.114723376345253 27.92358140740535 27.09141719891704 22.870278017332353 66-67 22.062847846534105 28.227819320543908 26.84899953697728 22.860333295944706 68-69 22.226189558556474 28.003222493802422 26.749723792165724 23.02086415547538 70-71 22.345873948211718 27.452201795954245 26.791657984814183 23.410266271019854 72-73 22.695042015232158 26.656337690704028 26.83927655002255 23.80934374404126 74-75 22.662981921991907 26.721883743150997 27.0869389233584 23.528195411498697 76-77 23.119946986582182 26.5673588321634 26.549974986529882 23.762719194724532 78-79 23.15478956462537 26.559812642051096 26.188176738641246 24.097221054682294 80-81 23.06684530718854 26.919499889215743 26.309579506283875 23.704075297311842 82-83 23.02766970939897 26.68361245334922 26.395598612774545 23.89311922447726 84-85 22.99802322918417 27.053292691832915 26.383819336760777 23.564864742222134 86-87 23.470829114808794 26.919857882661606 26.446448825064667 23.16286417746493 88-89 23.199253210513877 26.99398792367715 26.6787719529745 23.127986912834473 90-91 23.265783497034732 26.72119510997727 26.543384180240743 23.469637212747255 92-93 23.26191251055863 26.35526176258717 26.729192644246414 23.65363308260779 94-95 22.64841130572303 26.656881785334622 27.293513622936814 23.40119328600553 96-97 22.89309248555993 26.59763423018723 27.32722996049082 23.182043323762027 98-99 24.089802239958228 28.51752482679996 27.513821494327743 19.878851438914065 100 23.060258167756274 29.265459213177387 21.478385692333042 26.195896926733298 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 899.0 1 900.0 2 1419.0 3 2038.0 4 2445.5 5 3239.0 6 4057.5 7 4980.0 8 6264.0 9 7167.5 10 7185.0 11 7166.5 12 7910.5 13 9586.5 14 12332.5 15 14998.0 16 16813.0 17 17591.5 18 16938.5 19 15385.0 20 13758.0 21 12847.0 22 13330.5 23 15584.5 24 19511.0 25 25155.5 26 31948.0 27 40121.5 28 50315.5 29 62953.0 30 75819.5 31 89428.0 32 104820.0 33 118011.0 34 129327.5 35 141244.0 36 155084.0 37 169577.0 38 184778.5 39 197367.0 40 206696.5 41 216425.0 42 225998.0 43 236752.5 44 260079.0 45 291973.0 46 295612.0 47 287902.5 48 284907.0 49 277118.0 50 274815.0 51 273988.0 52 271949.0 53 266042.5 54 256426.5 55 243789.0 56 228356.0 57 210846.0 58 190067.5 59 165437.0 60 138722.5 61 113249.0 62 89934.0 63 68869.5 64 51122.5 65 37408.0 66 28272.5 67 22158.0 68 17182.0 69 12783.5 70 9368.0 71 6802.5 72 4875.0 73 3345.5 74 2242.5 75 1561.5 76 1018.0 77 585.5 78 382.5 79 250.5 80 144.5 81 89.0 82 68.5 83 49.5 84 32.5 85 23.5 86 17.5 87 10.0 88 6.0 89 5.0 90 5.0 91 4.0 92 3.5 93 5.0 94 4.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 6.062300749224594E-5 3 0.0 4 4.546725561918445E-5 5 0.004486102554426199 6 4.849840599379675E-4 7 4.546725561918445E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0012283351441166955 30-31 0.0 32-33 0.0 34-35 7.6228936229768656E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.5502966221284536E-5 44-45 1.5595074514045784E-5 46-47 3.9254176919203436E-5 48-49 1.3437044128517583E-4 50-51 5.250557812102106E-4 52-53 2.152106246456497E-4 54-55 3.429144152607442E-4 56-57 5.026499225201048E-4 58-59 4.310524432770906E-4 60-61 4.01150049052628E-5 62-63 4.4426515877148246E-4 64-65 1.2200255977637418E-4 66-67 1.9692580762760938E-4 68-69 5.055841772375892E-4 70-71 1.0887198655950201E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0010254038404611944 90-91 0.0 92-93 2.742500335727749E-5 94-95 2.7654788228389094E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 91.0 20-21 230.0 22-23 301.0 24-25 433.0 26-27 1716.0 28-29 5676.0 30-31 11518.0 32-33 14593.0 34-35 19926.0 36-37 31807.0 38-39 19102.0 40-41 33847.0 42-43 36218.0 44-45 42971.0 46-47 43375.0 48-49 41758.0 50-51 20893.0 52-53 3167.0 54-55 3013.0 56-57 2959.0 58-59 21757.0 60-61 42736.0 62-63 41583.0 64-65 49856.0 66-67 59420.0 68-69 60696.0 70-71 78762.0 72-73 45662.0 74-75 40624.0 76-77 42851.0 78-79 44453.0 80-81 43920.0 82-83 40789.0 84-85 39853.0 86-87 41845.0 88-89 44273.0 90-91 44948.0 92-93 44371.0 94-95 54842.0 96-97 222430.0 98-99 515785.0 100-101 4643105.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.7937550021431 #Duplication Level Percentage of deduplicated Percentage of total 1 85.87516765182612 67.66426920725952 2 8.868689634074652 13.975947164346488 3 2.7483162232334073 6.49650465485605 4 1.1166241496970744 3.5193203872283063 5 0.5481968558963849 2.159724437822245 6 0.2868338027361525 1.3560427427475268 7 0.1721180254049484 0.9493277867647103 8 0.1059214090910423 0.6676756445921089 9 0.07008923745874548 0.4970334784150281 >10 0.20360667637519358 2.4185787525167073 >50 0.0036693046347420796 0.198513868048678 >100 7.296220752052879E-4 0.07920016419377675 >500 3.740749628052716E-5 0.017861711208858905 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.546725561918445E-5 0.0 0.0 0.0 3 0.0 4.546725561918445E-5 0.0 1.5155751873061484E-5 0.0 4 0.0 1.060902631114304E-4 0.0 3.031150374612297E-5 0.0 5 0.0 1.060902631114304E-4 0.0 3.031150374612297E-5 0.0 6 2.121805262228608E-4 1.060902631114304E-4 0.0 4.546725561918445E-5 0.0 7 2.121805262228608E-4 1.060902631114304E-4 0.0 4.546725561918445E-5 0.0 8 2.121805262228608E-4 1.2124601498449188E-4 0.0 4.546725561918445E-5 0.0 9 2.121805262228608E-4 2.576477818420452E-4 0.0 1.2124601498449188E-4 0.0 10-11 2.121805262228608E-4 2.576477818420452E-4 0.0 2.0460265028633004E-4 0.0 12-13 2.121805262228608E-4 2.576477818420452E-4 0.0 2.65225657778576E-4 0.0 14-15 2.121805262228608E-4 3.182707893342912E-4 0.0 2.7280353371510673E-4 1.5155751873061484E-5 16-17 3.4858229308041416E-4 3.2584866527082194E-4 0.0 3.4858229308041416E-4 3.031150374612297E-5 18-19 3.4858229308041416E-4 3.637380449534756E-4 0.0 4.3951680431878306E-4 4.546725561918445E-5 20-21 3.4858229308041416E-4 4.243610524457216E-4 0.0 5.152955636840905E-4 4.546725561918445E-5 22-23 3.5616016901694487E-4 4.622504321283753E-4 0.0 5.607628193032749E-4 4.546725561918445E-5 24-25 3.637380449534756E-4 5.380291914936827E-4 0.0 5.759185711763364E-4 4.546725561918445E-5 26-27 3.637380449534756E-4 5.607628193032749E-4 0.0 6.441194546051132E-4 6.062300749224594E-5 28-29 3.637380449534756E-4 5.607628193032749E-4 0.0 0.0012427716535910417 6.062300749224594E-5 30-31 3.637380449534756E-4 6.365415786685824E-4 0.0 0.0029174822355643357 6.062300749224594E-5 32-33 3.713159208900064E-4 6.365415786685824E-4 0.0 0.0061608131363994935 6.062300749224594E-5 34-35 3.940495486995986E-4 8.335663530183817E-4 0.0 0.010351378529300993 6.062300749224594E-5 36-37 3.940495486995986E-4 0.0010154353754951195 0.0 0.020164727867108306 6.062300749224594E-5 38-39 3.940495486995986E-4 0.0010154353754951195 0.0 0.16447021932646325 9.09345112383689E-5 40-41 3.940495486995986E-4 0.001091214134860427 0.0 0.31515628232437704 9.09345112383689E-5 42-43 4.092053005726601E-4 0.0011366813904796114 0.0 0.3362909783113613 9.851238717489965E-5 44-45 4.1678317650919083E-4 0.0013261282888928799 0.0 0.36442763166369996 1.1366813904796114E-4 46-47 4.243610524457216E-4 0.001470107931686964 0.0 0.3970806990742109 1.2124601498449188E-4 48-49 4.243610524457216E-4 0.0014852636835600255 0.0 0.42597514002020265 1.2124601498449188E-4 50-51 4.3951680431878306E-4 0.0016671327060367633 0.0 0.455907749969499 1.2124601498449188E-4 52-53 4.3951680431878306E-4 0.0016671327060367633 0.0 0.8517532552660554 1.2124601498449188E-4 54-55 4.3951680431878306E-4 0.0016671327060367633 0.0 1.3776881567650352 1.2124601498449188E-4 56-57 4.3951680431878306E-4 0.0016822884579098247 0.0 1.9539325766066424 1.2124601498449188E-4 58-59 4.3951680431878306E-4 0.0016822884579098247 0.0 2.543074541292225 1.2124601498449188E-4 60-61 5.228734396206212E-4 0.0016898663338463554 0.0 2.6986559121451377 1.2882389092102263E-4 62-63 6.516973305416439E-4 0.0017201778375924785 0.0 2.7050667951874425 1.3640176685755337E-4 64-65 6.516973305416439E-4 0.0018944689841326856 0.0 2.7107880915195235 1.3640176685755337E-4 66-67 6.74430958351236E-4 0.001962669867561462 0.0 2.7153878622129977 1.3640176685755337E-4 68-69 6.820088342877668E-4 0.0019854034953710542 0.0 2.719472337342787 1.439796427940841E-4 70-71 7.35053965843482E-4 0.002008137123180647 0.0 2.7233522098222913 1.6671327060367632E-4 72-73 8.487221048914432E-4 0.0020157149991171775 0.0 2.7260499336556965 1.970247743497993E-4 74-75 8.562999808279739E-4 0.002061182254736362 0.0 2.7282247840494804 1.970247743497993E-4 76-77 8.790336086375661E-4 0.002205161897530446 0.0 2.73047541320263 1.970247743497993E-4 78-79 8.941893605106276E-4 0.0022430512772130995 0.0 2.731998566265873 1.970247743497993E-4 80-81 8.941893605106276E-4 0.0022430512772130995 0.0 2.732544173333303 2.1218052622286077E-4 82-83 9.017672364471583E-4 0.0022430512772130995 0.0 2.7328548662467007 2.576477818420452E-4 84-85 9.09345112383689E-4 0.0022582070290861614 0.0 2.7329988458894947 2.576477818420452E-4 86-87 9.09345112383689E-4 0.0022733627809592228 0.0 2.733127669780416 2.576477818420452E-4 88 9.09345112383689E-4 0.0024552318034359605 0.0 2.733127669780416 2.576477818420452E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7625 0.0 42.228336 1 GTATCAA 12910 0.0 35.73211 1 TCAACGC 15110 0.0 29.833721 4 ATCAACG 15565 0.0 28.961613 3 CAACGCA 15575 0.0 28.943018 5 TATCAAC 16315 0.0 27.845062 2 AACGCAG 16325 0.0 27.717934 6 GTACATG 19605 0.0 24.133118 1 ACGCAGA 19450 0.0 23.264538 7 TACATGG 20460 0.0 23.146032 2 CGCAGAG 19850 0.0 22.751596 8 ACATGGG 20870 0.0 22.145552 3 CATGGGG 15615 0.0 19.386194 4 GCAGAGT 24150 0.0 18.68245 9 GAGTACT 11675 0.0 18.515863 12-13 AGAGTAC 19775 0.0 17.887093 10-11 CGTCTTC 12260 0.0 16.948683 48-49 CAGAGTA 22730 0.0 16.929964 10-11 TATGCCG 13200 0.0 16.900108 42-43 CCGTCTT 13345 0.0 16.89234 46-47 >>END_MODULE