##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139756_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5355399 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78001452366107 33.0 33.0 33.0 33.0 33.0 2 32.78015979761732 33.0 33.0 33.0 33.0 33.0 3 32.773015045190846 33.0 33.0 33.0 33.0 33.0 4 36.71594310713357 37.0 37.0 37.0 37.0 37.0 5 36.735567788693245 37.0 37.0 37.0 37.0 37.0 6 36.697741475471766 37.0 37.0 37.0 37.0 37.0 7 36.677253552909875 37.0 37.0 37.0 37.0 37.0 8 36.67893634069095 37.0 37.0 37.0 37.0 37.0 9 36.69330557816514 37.0 37.0 37.0 37.0 37.0 10-11 36.64247668567739 37.0 37.0 37.0 37.0 37.0 12-13 36.61624306610955 37.0 37.0 37.0 37.0 37.0 14-15 35.4748302600796 40.0 37.0 40.0 19.5 40.0 16-17 35.79173643271024 40.0 37.0 40.0 24.0 40.0 18-19 38.258045198873134 40.0 37.0 40.0 37.0 40.0 20-21 38.61943741773952 40.0 37.0 40.0 37.0 40.0 22-23 38.66355161117991 40.0 37.0 40.0 37.0 40.0 24-25 38.6981726553563 40.0 37.0 40.0 37.0 40.0 26-27 38.65490901709323 40.0 37.0 40.0 37.0 40.0 28-29 38.59834838006383 40.0 37.0 40.0 37.0 40.0 30-31 38.48824502200756 40.0 37.0 40.0 37.0 40.0 32-33 38.3221162215952 40.0 37.0 40.0 37.0 40.0 34-35 38.250796393536575 40.0 37.0 40.0 37.0 40.0 36-37 38.18417657544195 40.0 37.0 40.0 37.0 40.0 38-39 38.19261807968399 40.0 37.0 40.0 37.0 40.0 40-41 38.13999050576999 40.0 37.0 40.0 37.0 40.0 42-43 38.097689689447414 40.0 37.0 40.0 37.0 40.0 44-45 38.05358170147471 40.0 37.0 40.0 37.0 40.0 46-47 37.92366557531895 40.0 37.0 40.0 33.0 40.0 48-49 37.71435438994416 40.0 37.0 40.0 33.0 40.0 50-51 37.630591861354134 40.0 37.0 40.0 33.0 40.0 52-53 37.553653329828954 40.0 37.0 40.0 33.0 40.0 54-55 37.34845738054358 40.0 37.0 40.0 33.0 40.0 56-57 37.247138549678425 37.0 37.0 40.0 33.0 40.0 58-59 37.18973320967946 37.0 37.0 40.0 33.0 40.0 60-61 37.07061194985337 37.0 37.0 40.0 33.0 40.0 62-63 36.889530043491455 37.0 37.0 40.0 33.0 40.0 64-65 36.628099849538245 37.0 37.0 40.0 33.0 40.0 66-67 36.30822599716711 37.0 37.0 40.0 33.0 40.0 68-69 36.01671199738709 37.0 37.0 40.0 33.0 40.0 70-71 35.773262273294236 37.0 33.0 37.0 33.0 40.0 72-73 35.54998096687055 37.0 33.0 37.0 33.0 40.0 74-75 35.25935418585052 37.0 33.0 37.0 33.0 40.0 76-77 32.42826996725336 33.0 30.0 35.0 27.0 37.0 78-79 34.513123437042694 37.0 33.0 37.0 30.0 37.0 80-81 34.811293935033206 37.0 33.0 37.0 33.0 37.0 82-83 34.772785310548045 37.0 33.0 37.0 33.0 37.0 84-85 34.720946946768734 37.0 33.0 37.0 33.0 37.0 86-87 34.54729817075117 37.0 33.0 37.0 33.0 37.0 88-89 34.31818470447877 37.0 33.0 37.0 30.0 37.0 90-91 34.16041490208347 37.0 33.0 37.0 27.0 37.0 92-93 34.16824462055919 37.0 33.0 37.0 27.0 37.0 94-95 34.09232205174956 37.0 33.0 37.0 27.0 37.0 96-97 34.01749855139069 37.0 33.0 37.0 27.0 37.0 98-99 33.994092853364826 33.0 33.0 37.0 27.0 37.0 100 34.03032875963837 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 17.0 21 94.0 22 407.0 23 1302.0 24 3452.0 25 7045.0 26 13209.0 27 22118.0 28 34503.0 29 51577.0 30 73006.0 31 101660.0 32 143224.0 33 205503.0 34 304385.0 35 497916.0 36 937504.0 37 1776340.0 38 1166026.0 39 16111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.52146310667048 19.571538927351632 12.91554560173761 23.991452364240274 2 15.069776717491685 21.480055152138938 40.44330847105185 23.00685965931753 3 18.676485444279024 26.040269885050687 30.17830690508144 25.104937765588854 4 12.388476468114632 17.645833006558647 38.89679372413345 31.06889680119327 5 13.21138036799506 38.169245310992764 35.5624922741503 13.056882046861876 6 30.318002449490695 37.92845313673174 18.684882302887235 13.068662110890337 7 26.861303891642805 32.75927713322574 22.983609624605002 17.395809350526452 8 25.007529784428762 36.38134152095857 21.313724710334377 17.297403984278294 9 26.211156255584317 16.341938294420267 20.957560771849117 36.489344678146296 10-11 24.367400076072762 26.935444025739258 28.873973722592844 19.823182175595132 12-13 25.189318293557584 24.492077994562123 29.06487453129076 21.25372918058953 14-15 22.355349965875483 25.451275148213696 26.785630079738983 25.407744806171838 16-17 21.760143361867154 28.980184296258788 27.419936404365014 21.839735937509044 18-19 21.70152961525369 28.087897839171273 29.254795020875196 20.95577752469984 20-21 22.474185337484567 27.378443690078026 29.20787355376361 20.9394974186738 22-23 22.123431387223707 27.3866384272558 29.057668401625 21.432261783895488 24-25 21.884284533807296 27.389877355537802 29.249565186446542 21.476272924208363 26-27 21.903140634919122 27.62373199950246 29.10310602006036 21.37002134551806 28-29 21.85488900004207 27.700129488264245 29.089552587661682 21.355428924031994 30-31 22.03565875326021 27.601346745391815 29.002252404625107 21.360742096722866 32-33 21.887622051717802 27.713452131759688 28.979867679649196 21.41905813687332 34-35 21.978709199968694 27.77879024307112 28.944277518009002 21.29822303895118 36-37 21.972200882568384 27.734603243857237 28.869012973360274 21.424182900214106 38-39 21.858978787078883 27.85832268334928 28.93918808058748 21.343510448984354 40-41 22.129514877748075 27.78257830583901 28.725619922307967 21.362286894104948 42-43 22.000108756241644 27.833933766312015 28.6007410582096 21.565216419236744 44-45 22.075865404204826 28.005384257710446 28.364236535053905 21.554513803030815 46-47 22.13088035545799 28.029658545006175 28.07775147004709 21.761709629488745 48-49 22.075091273067542 28.1149522925647 28.05330462194542 21.75665181242234 50-51 22.070690543126553 28.308653283244094 27.92636597348595 21.694290200143403 52-53 22.24668813132994 28.210704434905022 27.82113410822967 21.721473325535367 54-55 22.227024274697694 28.115018786686854 27.83224152200215 21.825715416613303 56-57 22.23722097777198 28.276805074833472 27.722912291153413 21.76306165624114 58-59 22.19292573770284 28.312419115273475 27.719223818705085 21.775431328318604 60-61 22.257271725722465 28.311893630511275 27.733508162349302 21.69732648141696 62-63 22.165872431167625 28.41089390219635 27.692066653190476 21.731167013445546 64-65 22.197483947537076 28.3463085781647 27.69226574241943 21.763941731878795 66-67 22.27167971520761 28.32253311147265 27.564511337795615 21.84127583552412 68-69 22.23149740738716 28.410693183750197 27.57977143193573 21.778037976926917 70-71 22.26993423655213 28.16092486788566 27.657184474804314 21.911956420757896 72-73 22.306650611572344 28.22137778059446 27.53210723112998 21.939864376703213 74-75 22.15018744612892 28.390900625065036 27.48847055720366 21.970441371602384 76-77 22.262812074820527 28.291680340008384 27.43336319959883 22.012144385572256 78-79 22.25763537637302 28.281204100725994 27.456148579318473 22.005011943582513 80-81 22.23272292076344 28.394960988491498 27.39069982846561 21.98161626227946 82-83 22.29380738567916 28.37892243437935 27.45342870074317 21.873841479198315 84-85 22.357055666142397 28.330333359907833 27.387113948435516 21.925497025514254 86-87 22.21070348689992 28.38677416540592 27.47334341931956 21.929178928374604 88-89 22.310821979862627 28.385227682241972 27.44434844551745 21.85960189237795 90-91 22.31938025661352 28.410225717839545 27.454085268320995 21.81630875722594 92-93 22.301281853268172 28.408322806873027 27.486921225983036 21.80347411387576 94-95 22.27355909111252 28.52560707459236 27.396042278250476 21.804791556044638 96-97 22.30021799332137 28.62839126261438 27.46492891082409 21.606461833240164 98-99 22.512077201906234 29.345097927184128 26.566723314623264 21.576101556286375 100 20.675181824967336 28.841139244022646 27.756119630912647 22.727559300097372 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1203.0 1 1052.0 2 1437.5 3 2210.5 4 3155.5 5 5126.0 6 6768.0 7 7705.0 8 8410.0 9 8389.5 10 7659.5 11 6944.0 12 7538.5 13 10322.0 14 16408.5 15 23892.5 16 30048.0 17 33826.0 18 33479.5 19 29923.5 20 25928.5 21 22501.5 22 20477.0 23 21208.5 24 24757.0 25 30468.5 26 38352.0 27 47679.0 28 58493.0 29 70480.0 30 82285.0 31 94453.5 32 107443.0 33 120279.5 34 132432.5 35 143283.5 36 155146.5 37 165660.0 38 173092.0 39 180679.0 40 188635.5 41 195472.5 42 199189.0 43 202248.0 44 205521.0 45 208792.0 46 210599.5 47 209810.5 48 207627.5 49 203569.0 50 198650.5 51 191684.5 52 182518.0 53 172449.5 54 161248.0 55 149080.5 56 136652.0 57 122999.5 58 108247.5 59 93957.5 60 78673.5 61 63834.5 62 50456.0 63 38723.5 64 29032.5 65 21396.0 66 15934.0 67 12202.0 68 9482.5 69 7086.5 70 5187.5 71 3795.0 72 2793.5 73 2043.0 74 1494.0 75 1079.0 76 774.0 77 528.5 78 357.0 79 255.0 80 175.5 81 125.0 82 86.0 83 53.5 84 38.5 85 28.0 86 20.0 87 16.5 88 13.5 89 11.0 90 9.0 91 7.0 92 4.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 5.78855095577379E-4 3 0.0015311650915272605 4 5.041641155028785E-4 5 1.8672745018625128E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.537823045491102 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008592322591653698 26-27 0.023740678910541085 28-29 0.008394996357805589 30-31 1.0293060269049367E-4 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.027221108244161837 50-51 0.07082426642381863 52-53 0.05908645913620398 54-55 0.040812604974496715 56-57 0.005852278021056555 58-59 0.010229317105807318 60-61 0.037690161769625655 62-63 0.038258644372964036 64-65 0.0 66-67 0.0035912125714325505 68-69 0.03421202245301602 70-71 0.08708338903985581 72-73 0.07795679831611695 74-75 0.03998759518575842 76-77 0.009596023784620574 78-79 0.0012136803581467882 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.001735866227816394 92-93 0.003708896568949605 94-95 0.0012481720183447553 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 124.0 20-21 407.0 22-23 806.0 24-25 1889.0 26-27 2752.0 28-29 4501.0 30-31 6569.0 32-33 7937.0 34-35 10403.0 36-37 11307.0 38-39 12525.0 40-41 14401.0 42-43 17164.0 44-45 22074.0 46-47 21712.0 48-49 15800.0 50-51 14910.0 52-53 14201.0 54-55 18155.0 56-57 21908.0 58-59 31932.0 60-61 16134.0 62-63 20276.0 64-65 27802.0 66-67 37510.0 68-69 27214.0 70-71 32454.0 72-73 28565.0 74-75 26647.0 76-77 18528.0 78-79 25530.0 80-81 33542.0 82-83 43170.0 84-85 53098.0 86-87 56026.0 88-89 61597.0 90-91 63667.0 92-93 66198.0 94-95 82453.0 96-97 206619.0 98-99 37059.0 100-101 4139833.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.57999879268853 #Duplication Level Percentage of deduplicated Percentage of total 1 91.58191019466263 81.12325494475326 2 6.297732595895107 11.157062914821275 3 1.315885771182556 3.496834800680005 4 0.41125700006255583 1.457165782761036 5 0.16419603498851174 0.7272242290523306 6 0.08417530332448574 0.44737489601142827 7 0.042956293822457296 0.2663547918452149 8 0.028864548042189332 0.2045457304582905 9 0.017695472826772002 0.14107184654683647 >10 0.053511959265046594 0.7274886449882048 >50 0.0010322308581036373 0.06301435173761119 >100 7.233477487284116E-4 0.14971844091688088 >500 5.924732089363649E-5 0.03888862542763121 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.867274501862513E-5 0.0 0.0 0.0 5 0.0 1.867274501862513E-5 0.0 0.0 0.0 6 9.336372509312565E-5 3.734549003725026E-5 0.0 0.0 0.0 7 9.336372509312565E-5 3.734549003725026E-5 0.0 0.0 0.0 8 9.336372509312565E-5 7.469098007450052E-5 0.0 0.0 0.0 9 9.336372509312565E-5 1.6805470516762617E-4 0.0 1.867274501862513E-5 0.0 10-11 9.336372509312565E-5 1.6805470516762617E-4 0.0 7.469098007450052E-5 0.0 12-13 9.336372509312565E-5 1.867274501862513E-4 0.0 9.336372509312565E-5 0.0 14-15 9.336372509312565E-5 1.867274501862513E-4 0.0 1.2137284262106335E-4 0.0 16-17 1.4938196014900105E-4 1.867274501862513E-4 0.0 1.4938196014900105E-4 0.0 18-19 1.4938196014900105E-4 2.054001952048764E-4 0.0 1.4938196014900105E-4 9.336372509312566E-6 20-21 1.4938196014900105E-4 2.2407294022350156E-4 0.0 2.2407294022350156E-4 4.668186254656283E-5 22-23 1.4938196014900105E-4 2.987639202980021E-4 0.0 2.8009117527937695E-4 5.601823505587539E-5 24-25 1.4938196014900105E-4 3.0810029280731464E-4 0.0 3.454457828445649E-4 5.601823505587539E-5 26-27 1.4938196014900105E-4 3.174366653166272E-4 0.0 5.135004880121911E-4 5.601823505587539E-5 28-29 1.4938196014900105E-4 3.174366653166272E-4 0.0 0.0014191286214155097 5.601823505587539E-5 30-31 1.4938196014900105E-4 3.734549003725026E-4 0.0 0.004593495274581782 5.601823505587539E-5 32-33 1.4938196014900105E-4 3.734549003725026E-4 0.0 0.010148636917622758 5.601823505587539E-5 34-35 1.4938196014900105E-4 4.5748225295631567E-4 0.0 0.019064872664016255 5.601823505587539E-5 36-37 1.4938196014900105E-4 5.601823505587539E-4 0.0 0.029605637227030142 5.601823505587539E-5 38-39 1.4938196014900105E-4 5.975278405960042E-4 0.0 0.04596296186334575 5.601823505587539E-5 40-41 1.4938196014900105E-4 6.162005856146293E-4 0.0 0.0583336554381849 5.601823505587539E-5 42-43 1.4938196014900105E-4 6.722188206705047E-4 0.0 0.06563469874046733 7.469098007450051E-5 44-45 1.4938196014900105E-4 8.029280358008806E-4 0.0 0.07187139557668812 9.336372509312565E-5 46-47 1.4938196014900105E-4 8.77619015875381E-4 0.0 0.07833216535313242 9.336372509312565E-5 48-49 1.4938196014900105E-4 8.869553883846936E-4 0.0 0.08296300611775145 9.336372509312565E-5 50-51 2.1473656771418899E-4 0.0010550100935523199 0.0 0.0875378286473146 9.336372509312565E-5 52-53 2.2407294022350156E-4 0.0010830192110802576 0.0 0.10567840043290892 9.336372509312565E-5 54-55 2.2407294022350156E-4 0.00109235558358957 0.0 0.12389366319857772 9.336372509312565E-5 56-57 2.2407294022350156E-4 0.0011016919560988827 0.0 0.14531130173494075 9.336372509312565E-5 58-59 2.2407294022350156E-4 0.0011016919560988827 0.0 0.16271430009229937 9.336372509312565E-5 60-61 2.334093127328141E-4 0.0011297010736268202 0.0 0.1767188588562682 9.336372509312565E-5 62-63 2.4274568524212668E-4 0.0011390374461361329 0.0 0.18376782010079923 9.336372509312565E-5 64-65 2.4274568524212668E-4 0.0012510739162478837 0.0 0.18557907636760584 9.336372509312565E-5 66-67 2.5208205775143925E-4 0.0012510739162478837 0.0 0.1884173336104369 1.307092151303759E-4 68-69 2.614184302607518E-4 0.0012510739162478837 0.0 0.1914890001660007 1.307092151303759E-4 70-71 2.614184302607518E-4 0.001260410288757196 0.0 0.1935710112355774 1.307092151303759E-4 72-73 2.8009117527937695E-4 0.0012697466612665088 0.0 0.19595178622545212 1.307092151303759E-4 74-75 2.8009117527937695E-4 0.0013070921513037592 0.0 0.19739892396439557 1.307092151303759E-4 76-77 2.8009117527937695E-4 0.0013631103863596344 0.0 0.19837924307787339 1.307092151303759E-4 78-79 2.8009117527937695E-4 0.001391119503887572 0.0 0.19893008905592283 1.307092151303759E-4 80-81 2.8009117527937695E-4 0.0014004558763968846 0.0 0.19919150748618358 1.307092151303759E-4 82-83 2.8009117527937695E-4 0.0014004558763968846 0.0 0.19989173542438202 1.307092151303759E-4 84-85 2.894275477886895E-4 0.0014004558763968846 0.0 0.20051727238250594 1.307092151303759E-4 86-87 3.0810029280731464E-4 0.0014004558763968846 0.0 0.20094674551793434 1.307092151303759E-4 88 3.3610941033525234E-4 0.001437801366434135 0.0 0.20097475463546227 1.307092151303759E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6325 0.0 52.518185 1 GTATCAA 12115 0.0 39.19027 1 TCAACGC 14115 0.0 32.920403 4 ATCAACG 14210 0.0 32.825054 3 CAACGCA 14530 0.0 31.919744 5 AACGCAG 14880 0.0 31.257412 6 TATCAAC 15075 0.0 31.087683 2 CGCAGAG 17230 0.0 26.919323 8 ACGCAGA 17510 0.0 26.53749 7 GTACATG 15455 0.0 26.348349 1 TACATGG 15065 0.0 26.302258 2 ACATGGG 15655 0.0 24.693869 3 GAGTACT 12150 0.0 22.53888 12-13 GCAGAGT 19950 0.0 22.00936 9 CATGGGG 10660 0.0 21.527546 4 GTGGTAT 3140 0.0 20.82241 1 CAGAGTA 18710 0.0 20.372126 10-11 AGAGTAC 16995 0.0 20.358583 10-11 GTACTTT 13840 0.0 19.619148 14-15 TGGTATC 3240 0.0 18.960833 2 >>END_MODULE