##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139755_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5277348 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.62940609563743 18.0 18.0 32.0 18.0 33.0 2 28.09507142602686 28.0 27.0 32.0 18.0 33.0 3 31.195348307521126 32.0 31.0 33.0 27.0 33.0 4 31.548738874146636 33.0 32.0 33.0 30.0 33.0 5 32.450321638823134 33.0 33.0 33.0 32.0 33.0 6 36.42188216505715 38.0 37.0 38.0 34.0 38.0 7 36.97365551788512 38.0 38.0 38.0 35.0 38.0 8 36.93331972801491 38.0 38.0 38.0 35.0 38.0 9 37.182550970676935 38.0 38.0 38.0 36.0 38.0 10-11 37.29504194152062 38.0 38.0 38.0 36.5 38.0 12-13 37.32327553536359 38.0 38.0 38.0 37.0 38.0 14-15 37.31615093414344 38.0 38.0 38.0 37.0 38.0 16-17 37.265032834673775 38.0 38.0 38.0 36.5 38.0 18-19 37.25569708497525 38.0 38.0 38.0 36.5 38.0 20-21 37.32377472115888 38.0 38.0 38.0 37.0 38.0 22-23 37.34441448275972 38.0 38.0 38.0 37.0 38.0 24-25 37.3489575675525 38.0 38.0 38.0 37.0 38.0 26-27 37.25740400912239 38.0 38.0 38.0 37.0 38.0 28-29 37.16889392833526 38.0 38.0 38.0 36.0 38.0 30-31 37.25070503553603 38.0 38.0 38.0 37.0 38.0 32-33 37.274771187041914 38.0 38.0 38.0 37.0 38.0 34-35 37.22731265259391 38.0 38.0 38.0 37.0 38.0 36-37 37.23448480031472 38.0 38.0 38.0 37.0 38.0 38-39 37.22656781095171 38.0 38.0 38.0 37.0 38.0 40-41 37.197093383730326 38.0 38.0 38.0 36.5 38.0 42-43 37.19750231966741 38.0 38.0 38.0 36.0 38.0 44-45 37.13625182395471 38.0 38.0 38.0 36.0 38.0 46-47 37.11496740090853 38.0 38.0 38.0 36.0 38.0 48-49 37.090054637572024 38.0 38.0 38.0 36.0 38.0 50-51 37.084397855517935 38.0 38.0 38.0 36.0 38.0 52-53 37.06105615630135 38.0 38.0 38.0 36.0 38.0 54-55 37.00898495865762 38.0 38.0 38.0 36.0 38.0 56-57 37.003478136345564 38.0 38.0 38.0 36.0 38.0 58-59 37.013163770354 38.0 38.0 38.0 36.0 38.0 60-61 37.01986438088251 38.0 38.0 38.0 36.0 38.0 62-63 36.94515439511063 38.0 38.0 38.0 36.0 38.0 64-65 36.972823387588605 38.0 38.0 38.0 36.0 38.0 66-67 36.989564024024176 38.0 38.0 38.0 36.0 38.0 68-69 36.95414759555619 38.0 38.0 38.0 36.0 38.0 70-71 36.902098197305435 38.0 38.0 38.0 35.5 38.0 72-73 36.91226641277747 38.0 38.0 38.0 36.0 38.0 74-75 36.93067159109019 38.0 38.0 38.0 36.0 38.0 76-77 36.86379867926495 38.0 38.0 38.0 35.0 38.0 78-79 36.88770861801647 38.0 38.0 38.0 35.0 38.0 80-81 36.86064526458959 38.0 38.0 38.0 35.0 38.0 82-83 36.80818658028095 38.0 38.0 38.0 35.0 38.0 84-85 36.83670879439352 38.0 38.0 38.0 35.0 38.0 86-87 36.85669412655217 38.0 38.0 38.0 35.0 38.0 88-89 36.76535343508424 38.0 38.0 38.0 35.0 38.0 90-91 36.72061647197991 38.0 38.0 38.0 35.0 38.0 92-93 36.7723749501483 38.0 38.0 38.0 35.0 38.0 94-95 36.753645013470646 38.0 38.0 38.0 35.0 38.0 96-97 36.700380564703536 38.0 38.0 38.0 34.0 38.0 98-99 36.71642232193088 38.0 38.0 38.0 34.5 38.0 100 35.08070402484793 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 19.0 20 89.0 21 256.0 22 624.0 23 1518.0 24 3132.0 25 5950.0 26 10035.0 27 16065.0 28 23527.0 29 33943.0 30 46493.0 31 61838.0 32 81930.0 33 112145.0 34 169273.0 35 318670.0 36 991385.0 37 3400451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.863880115542884 14.352151876283315 12.675836423900794 24.10813158427301 2 14.964886712963917 20.473052084693315 41.552185217307105 23.009875985035663 3 18.345938149237078 25.754450909813038 30.175762523146094 25.72384841780379 4 12.19705890043973 17.662552351124976 38.78597310087305 31.354415647562238 5 13.338008755330911 37.48266613507586 35.9707589684157 13.208566141177533 6 30.459838069814012 37.70207165130285 18.66358329278257 13.174506986100562 7 26.952449204581242 32.38409988657177 22.969538097369398 17.69391281147759 8 24.779946291205356 36.47866314671687 21.27976021289481 17.46163034918296 9 25.702853023905188 16.408677237127435 21.08443483355655 36.80403490541082 10-11 24.245075367400446 26.6246322963731 29.14077297915544 19.989519357071014 12-13 24.903578464031558 24.02162980345431 29.26733275880234 21.807458973711796 14-15 21.93144170140002 25.5384806914382 26.578520120333167 25.951557486828612 16-17 21.853400609548583 28.787754758640133 27.314543213750543 22.044301418060737 18-19 21.873808587191903 28.05509509700706 28.802459113933743 21.268637201867303 20-21 22.475724158487868 27.287318311953197 28.73282603890331 21.504131490655624 22-23 22.16145905384053 27.287342281172055 28.640869334847334 21.910329330140076 24-25 22.056288209764226 27.35700197986252 28.725328235128906 21.861381575244344 26-27 22.03310869738474 27.567098195252175 28.63073976152951 21.76905334583357 28-29 21.94547765589906 27.499432149765333 28.697662504706805 21.857427689628796 30-31 22.266721705834627 27.404030195626284 28.60945440052382 21.71979369801527 32-33 21.957320832440082 27.580878462816038 28.649697230127448 21.812103474616436 34-35 22.106473561916186 27.464859737236395 28.63728189040671 21.791384810440707 36-37 22.015364590282534 27.53797844335798 28.6305302965308 21.816126669828687 38-39 21.87196423934635 27.51502660966635 28.794409408071314 21.818599742915985 40-41 22.118431638161223 27.356507270463243 28.723490827498676 21.801570263876858 42-43 22.064272213189568 27.41053833910173 28.602061777140662 21.923127670568036 44-45 22.009873989192705 27.56910761185899 28.529166214171553 21.89185218477675 46-47 22.13861926437359 27.470038573159272 28.320295812861318 22.071046349605822 48-49 22.021435867091082 27.575770641078822 28.33516946149657 22.06762403033353 50-51 21.961701673897142 27.6910689342538 28.36432058521312 21.982908806635937 52-53 22.1027600987278 27.631304252913797 28.345318169227905 21.920617479130495 54-55 22.12640434049758 27.512972087274445 28.25332765528646 22.107295916941514 56-57 22.099827544050058 27.717612339202415 28.181916819819307 22.00064329692822 58-59 21.995897243340988 27.7668658528501 28.33657967214106 21.900657231667857 60-61 22.107722977965892 27.85531912093859 28.181658929666288 21.855298971429228 62-63 22.00424308713661 27.96739862299345 28.155964179786388 21.87239411008355 64-65 21.993808641491892 27.96781559974073 28.114185013438288 21.924190745329092 66-67 22.01074725037955 28.005601149601446 28.017244860848734 21.966406739170274 68-69 21.994973081405952 27.94798645744959 28.081984760666344 21.975055700478112 70-71 22.040884701 27.710988068431092 28.14626703027473 22.10186020029418 72-73 22.125086511883833 27.62874687804941 28.116620168768026 22.129546441298732 74-75 21.99525062970711 27.75918632188282 28.07961298605619 22.165950062353883 76-77 22.16921735919678 27.694879876996552 27.966576420837786 22.16932634296888 78-79 22.1177773424942 27.69773098186507 27.936242716075842 22.248248959564886 80-81 22.118020781379517 27.756836440125525 27.913754486928994 22.211388291565967 82-83 22.187686612959663 27.730419663946464 27.96104638920191 22.120847333891962 84-85 22.228102039798916 27.700587861990538 27.932191293857787 22.139118804352755 86-87 22.06139421713658 27.758556511221173 28.03729723744233 22.142752034199916 88-89 22.16488253158578 27.758555208490538 27.939377553500115 22.13718470642357 90-91 22.25648992805276 27.800261530211472 27.89364054973292 22.049607992002848 92-93 22.22660531470308 27.759476692751218 27.9618728124937 22.052045180052005 94-95 22.18807350548292 27.844870642351854 27.923487757248676 22.043568094916548 96-97 22.263883202612465 27.890045961430488 28.04375603029861 21.802314805658433 98-99 23.261063342976623 29.811035845743266 28.292718678978517 18.635182132301594 100 22.166483326862515 30.73964130106553 22.319275484232776 24.77459988783918 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 630.0 1 575.5 2 934.5 3 1484.0 4 1821.0 5 2460.0 6 3062.0 7 3857.5 8 4996.5 9 5708.0 10 5631.5 11 5381.0 12 5879.0 13 6958.5 14 8792.0 15 10934.5 16 12681.0 17 14041.5 18 14432.0 19 13850.5 20 12989.5 21 12835.5 22 14242.0 23 17480.0 24 22503.5 25 29181.0 26 38037.0 27 48710.0 28 59318.5 29 71171.5 30 84122.0 31 96597.5 32 109606.0 33 122367.5 34 134650.5 35 145636.5 36 157592.5 37 169439.0 38 178989.5 39 187857.0 40 196332.5 41 203554.5 42 208767.5 43 216477.5 44 221858.5 45 223768.0 46 224506.0 47 221142.0 48 217606.0 49 213176.5 50 207635.0 51 201124.0 52 192570.5 53 183353.0 54 172188.0 55 159591.0 56 146897.5 57 133299.0 58 119048.5 59 104189.5 60 87973.5 61 71719.0 62 57093.0 63 44005.0 64 32975.5 65 24639.0 66 18387.0 67 13970.0 68 10546.5 69 7769.0 70 5724.5 71 4112.0 72 2879.5 73 1949.5 74 1280.0 75 836.0 76 538.5 77 331.0 78 221.5 79 160.5 80 109.5 81 66.5 82 40.0 83 27.5 84 18.5 85 10.5 86 6.5 87 4.0 88 2.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.894891146083222E-5 3 0.0 4 3.789782292166444E-5 5 0.0020085846148482156 6 2.2738693752998666E-4 7 3.789782292166444E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 9.574678558607034E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.9432025221214175E-5 44-45 1.9549740159516104E-5 46-47 2.9529305818188652E-5 48-49 1.4867412416073457E-4 50-51 5.586043270887687E-4 52-53 2.3073752943909913E-4 54-55 3.531111208412842E-4 56-57 5.277889510022052E-4 58-59 4.3922163389222067E-4 60-61 1.1308385321921459E-4 62-63 4.4487451279774654E-4 64-65 9.372632433994538E-5 66-67 1.468574036639034E-4 68-69 6.237357457881452E-4 70-71 1.2787575250884233E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.11854241923137E-4 90-91 0.0 92-93 1.158866855353368E-5 94-95 4.675413508181331E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 90.0 20-21 233.0 22-23 327.0 24-25 373.0 26-27 1247.0 28-29 4030.0 30-31 9003.0 32-33 11759.0 34-35 16664.0 36-37 25631.0 38-39 27895.0 40-41 26912.0 42-43 29683.0 44-45 34762.0 46-47 35676.0 48-49 32950.0 50-51 29324.0 52-53 27526.0 54-55 29932.0 56-57 30455.0 58-59 31247.0 60-61 31181.0 62-63 31102.0 64-65 33785.0 66-67 36407.0 68-69 37321.0 70-71 40913.0 72-73 32681.0 74-75 32195.0 76-77 33431.0 78-79 34729.0 80-81 34238.0 82-83 32543.0 84-85 32221.0 86-87 33432.0 88-89 35641.0 90-91 36280.0 92-93 35904.0 94-95 43743.0 96-97 161110.0 98-99 373812.0 100-101 3708960.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.24162866174598 #Duplication Level Percentage of deduplicated Percentage of total 1 92.13825636103384 82.22568059712137 2 5.858346188681013 10.456167102844516 3 1.2001680128917156 3.2131484441456415 4 0.4020908109291024 1.4353295534894108 5 0.17594512064823745 0.7850814560868051 6 0.0796048966335696 0.42624423750178136 7 0.04796507211498722 0.2996336808093689 8 0.02666219599548434 0.19035022354685632 9 0.01714427979906646 0.13769851063512256 >10 0.052591802712063596 0.6888523290912305 >50 7.499045303951561E-4 0.043560942625095016 >100 4.174835849634805E-4 0.05944206992628592 >500 5.7870445538865634E-5 0.03881085217652153 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.894891146083222E-5 0.0 0.0 0.0 3 0.0 1.894891146083222E-5 0.0 0.0 0.0 4 0.0 7.579564584332888E-5 0.0 0.0 0.0 5 0.0 7.579564584332888E-5 0.0 0.0 0.0 6 1.894891146083222E-5 7.579564584332888E-5 0.0 0.0 1.894891146083222E-5 7 1.894891146083222E-5 7.579564584332888E-5 0.0 0.0 1.894891146083222E-5 8 1.894891146083222E-5 7.579564584332888E-5 0.0 0.0 3.789782292166444E-5 9 1.894891146083222E-5 1.3264238022582555E-4 0.0 1.894891146083222E-5 3.789782292166444E-5 10-11 5.6846734382496666E-5 1.3264238022582555E-4 0.0 1.894891146083222E-5 3.789782292166444E-5 12-13 9.474455730416111E-5 1.3264238022582555E-4 0.0 1.894891146083222E-5 3.789782292166444E-5 14-15 9.474455730416111E-5 1.5159129168665776E-4 0.0 3.789782292166444E-5 3.789782292166444E-5 16-17 9.474455730416111E-5 1.5159129168665776E-4 0.0 7.579564584332888E-5 3.789782292166444E-5 18-19 9.474455730416111E-5 1.7054020314749E-4 0.0 1.1369346876499333E-4 3.789782292166444E-5 20-21 9.474455730416111E-5 1.8948911460832222E-4 0.0 1.7054020314749E-4 3.789782292166444E-5 22-23 9.474455730416111E-5 2.4633584899081887E-4 0.0 2.842336719124833E-4 6.632119011291278E-5 24-25 1.1369346876499333E-4 2.842336719124833E-4 0.0 3.6950377348622833E-4 9.474455730416111E-5 26-27 1.3264238022582555E-4 3.031825833733155E-4 0.0 4.3582496359914104E-4 9.474455730416111E-5 28-29 1.3264238022582555E-4 3.031825833733155E-4 0.0 9.569200287720272E-4 9.474455730416111E-5 30-31 1.3264238022582555E-4 3.2213149483414775E-4 0.0 0.0020654313492307124 9.474455730416111E-5 32-33 1.5159129168665776E-4 3.2213149483414775E-4 0.0 0.004149811609922257 9.474455730416111E-5 34-35 1.7054020314749E-4 3.979271406774766E-4 0.0 0.006764761391517103 9.474455730416111E-5 36-37 1.7054020314749E-4 4.926716979816377E-4 0.0 0.011104062116047681 9.474455730416111E-5 38-39 1.7054020314749E-4 5.495184323641344E-4 0.0 0.02319346762805864 9.474455730416111E-5 40-41 1.8948911460832222E-4 6.347885339378794E-4 0.0 0.03615452306726788 1.0421901303457723E-4 42-43 1.8948911460832222E-4 7.011097240507922E-4 0.0 0.0436961898286791 1.1369346876499333E-4 44-45 1.9896357033873834E-4 7.863798256245372E-4 0.0 0.05249795920223567 1.1369346876499333E-4 46-47 2.1791248179957055E-4 8.62175471467866E-4 0.0 0.06252193336501591 1.2316792449540943E-4 48-49 2.2738693752998666E-4 8.716499271982822E-4 0.0 0.07251748416060491 1.3264238022582555E-4 50-51 2.4633584899081887E-4 9.37971117311195E-4 0.0 0.08256040723484598 1.3264238022582555E-4 52-53 2.4633584899081887E-4 9.47445573041611E-4 0.0 0.10836882464449947 1.4211683595624164E-4 54-55 2.4633584899081887E-4 9.47445573041611E-4 0.0 0.14117886483893044 1.5159129168665776E-4 56-57 2.4633584899081887E-4 9.47445573041611E-4 0.0 0.19141242912159667 1.6106574741707387E-4 58-59 2.4633584899081887E-4 9.569200287720271E-4 0.0 0.22896917163696615 1.800146588779061E-4 60-61 2.8423367191248334E-4 9.663944845024432E-4 0.0 0.2443935855660836 1.8948911460832222E-4 62-63 3.031825833733155E-4 9.663944845024432E-4 0.0 0.2554029031248271 1.8948911460832222E-4 64-65 3.031825833733155E-4 0.0010706134975370205 0.0 0.25943902126598434 1.8948911460832222E-4 66-67 3.031825833733155E-4 0.0010895624089978526 0.0 0.26355093505298494 1.8948911460832222E-4 68-69 3.031825833733155E-4 0.001117985776189101 0.0 0.26784286349886344 1.8948911460832222E-4 70-71 3.031825833733155E-4 0.0011369346876499333 0.0 0.27172739034833404 1.8948911460832222E-4 72-73 3.6950377348622833E-4 0.0011369346876499333 0.0 0.27512871995555344 2.2738693752998666E-4 74-75 3.7897822921664445E-4 0.0011369346876499333 0.0 0.27771524636995704 2.2738693752998666E-4 76-77 3.7897822921664445E-4 0.0011558835991107655 0.0 0.2801691304041348 2.2738693752998666E-4 78-79 3.7897822921664445E-4 0.0011558835991107655 0.0 0.2814387074720106 2.2738693752998666E-4 80-81 3.7897822921664445E-4 0.0011558835991107655 0.0 0.28183663461268804 2.3686139326040275E-4 82-83 3.884526849470605E-4 0.0011558835991107655 0.0 0.2821113938288701 2.4633584899081887E-4 84-85 3.979271406774766E-4 0.001203255877762846 0.0 0.2822724595762872 2.4633584899081887E-4 86-87 3.979271406774766E-4 0.001212730333493262 0.0 0.28231035739920884 2.4633584899081887E-4 88 3.979271406774766E-4 0.0012506281564149265 0.0 0.28231983185493925 2.652847604516511E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5745 0.0 41.206142 1 GTATCAA 9610 0.0 35.365574 1 TCAACGC 10290 0.0 31.54834 4 ATCAACG 10315 0.0 31.429691 3 CAACGCA 10715 0.0 30.256393 5 AACGCAG 11090 0.0 29.15399 6 TATCAAC 11760 0.0 27.937832 2 GTACATG 12950 0.0 26.6475 1 ACGCAGA 12725 0.0 25.442272 7 GTCAACG 675 0.0 25.142815 1 TACATGG 13105 0.0 25.004087 2 ACATGGG 12645 0.0 24.950098 3 GCGCAGA 1315 0.0 24.488323 1 CGCAGAG 13420 0.0 24.059805 8 CATGGGG 9700 0.0 23.552696 4 GCAGAGT 16355 0.0 19.715527 9 CTTATAC 4760 0.0 19.289837 1 GAGTACT 9605 0.0 18.665539 12-13 TATGCCG 2640 0.0 18.438787 42-43 CTCGTAT 2615 0.0 18.103065 38-39 >>END_MODULE