##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139754_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5176505 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.725880106365203 25.0 18.0 32.0 18.0 33.0 2 28.291467312404798 30.0 27.0 32.0 18.0 33.0 3 31.257432959110442 32.0 31.0 33.0 27.0 33.0 4 31.58303797639527 33.0 32.0 33.0 30.0 33.0 5 32.45475161329893 33.0 33.0 33.0 32.0 33.0 6 36.4236244338603 38.0 37.0 38.0 34.0 38.0 7 36.994376514656125 38.0 38.0 38.0 35.0 38.0 8 36.956254268082425 38.0 38.0 38.0 35.0 38.0 9 37.19636839914189 38.0 38.0 38.0 36.0 38.0 10-11 37.310911899051575 38.0 38.0 38.0 36.5 38.0 12-13 37.33625969645543 38.0 38.0 38.0 37.0 38.0 14-15 37.33139492765872 38.0 38.0 38.0 37.0 38.0 16-17 37.27948200571621 38.0 38.0 38.0 37.0 38.0 18-19 37.270592030723435 38.0 38.0 38.0 36.5 38.0 20-21 37.335495622818534 38.0 38.0 38.0 37.0 38.0 22-23 37.360211722358414 38.0 38.0 38.0 37.0 38.0 24-25 37.36249967592215 38.0 38.0 38.0 37.0 38.0 26-27 37.27061075841661 38.0 38.0 38.0 37.0 38.0 28-29 37.18113761207519 38.0 38.0 38.0 36.0 38.0 30-31 37.25829760388956 38.0 38.0 38.0 37.0 38.0 32-33 37.28089865833961 38.0 38.0 38.0 37.0 38.0 34-35 37.23350632763224 38.0 38.0 38.0 37.0 38.0 36-37 37.23825012558352 38.0 38.0 38.0 37.0 38.0 38-39 37.21789117520866 38.0 38.0 38.0 37.0 38.0 40-41 37.2033922223314 38.0 38.0 38.0 37.0 38.0 42-43 37.207684996513976 38.0 38.0 38.0 37.0 38.0 44-45 37.148043660187795 38.0 38.0 38.0 36.0 38.0 46-47 37.1264113549466 38.0 38.0 38.0 36.0 38.0 48-49 37.1007271037327 38.0 38.0 38.0 36.0 38.0 50-51 37.09285217704212 38.0 38.0 38.0 36.0 38.0 52-53 37.07247838854631 38.0 38.0 38.0 36.0 38.0 54-55 37.02391207189715 38.0 38.0 38.0 36.0 38.0 56-57 37.01611359431974 38.0 38.0 38.0 36.0 38.0 58-59 37.02406284656499 38.0 38.0 38.0 36.0 38.0 60-61 37.02923104792997 38.0 38.0 38.0 36.0 38.0 62-63 36.957783443701835 38.0 38.0 38.0 36.0 38.0 64-65 36.985123074243624 38.0 38.0 38.0 36.0 38.0 66-67 36.996149946761975 38.0 38.0 38.0 36.0 38.0 68-69 36.96607220401805 38.0 38.0 38.0 36.0 38.0 70-71 36.91405414525492 38.0 38.0 38.0 36.0 38.0 72-73 36.929766281006025 38.0 38.0 38.0 36.0 38.0 74-75 36.94948478434746 38.0 38.0 38.0 36.0 38.0 76-77 36.88332351360785 38.0 38.0 38.0 35.5 38.0 78-79 36.90676530145941 38.0 38.0 38.0 35.0 38.0 80-81 36.876873620911674 38.0 38.0 38.0 35.0 38.0 82-83 36.82768228448906 38.0 38.0 38.0 35.0 38.0 84-85 36.85291278284595 38.0 38.0 38.0 35.0 38.0 86-87 36.8717184713727 38.0 38.0 38.0 35.0 38.0 88-89 36.779770502090344 38.0 38.0 38.0 35.0 38.0 90-91 36.73301334684563 38.0 38.0 38.0 35.0 38.0 92-93 36.78409670210135 38.0 38.0 38.0 35.0 38.0 94-95 36.7643797592588 38.0 38.0 38.0 35.0 38.0 96-97 36.714582304753776 38.0 38.0 38.0 34.5 38.0 98-99 36.725087724147 38.0 38.0 38.0 34.5 38.0 100 35.093272684138356 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 26.0 20 85.0 21 253.0 22 567.0 23 1341.0 24 2961.0 25 5571.0 26 9622.0 27 15351.0 28 22840.0 29 32761.0 30 44910.0 31 59486.0 32 79275.0 33 108979.0 34 164104.0 35 311141.0 36 981924.0 37 3335302.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.9488187493299 15.159282179771875 12.690241775097292 24.20165729580093 2 14.90882361747936 20.507504580793412 41.628724399957115 22.954947401770113 3 18.239082160646998 26.029724688762013 30.2583306690518 25.472862481539188 4 12.175581956920698 17.77981261470105 38.57737853762195 31.4672268907563 5 13.22567583439971 37.55615854676286 35.96061444829782 13.257551170539617 6 30.278916633326848 37.698534509754 18.669473715119484 13.35307514179967 7 26.767935805311037 32.428842405770844 22.90642930178926 17.89679248712886 8 24.805056693657207 36.41878062515153 21.32942979867691 17.44673288251436 9 25.648869266039537 16.38557289136203 20.963642457604116 37.00191538499432 10-11 24.187342618233732 26.59516411169312 29.133778485677116 20.083714784396037 12-13 24.906341247617842 24.009413687420373 29.208925713391565 21.87531935157022 14-15 21.95907277207305 25.477759608075335 26.455349700232105 26.107817919619514 16-17 21.891131178275693 28.8260612131158 27.14484966207895 22.13795794652956 18-19 21.9392041541542 27.891173677993166 28.712248901527186 21.457373266325448 20-21 22.50658057354609 27.152077680083526 28.585368181290878 21.755973565079508 22-23 22.251353278823206 27.295464097432404 28.47222913148377 21.980953492260625 24-25 22.159632259145827 27.284906907988955 28.64258628042993 21.912874552435287 26-27 22.17773660910266 27.447127364236117 28.557899052759794 21.81723697390143 28-29 21.964269767431073 27.309742426403815 28.578561164595897 22.14742664156922 30-31 22.33023855368694 27.302704048356468 28.569774091954418 21.79728330600217 32-33 22.228082215752316 27.31550884882183 28.665030888252108 21.791378047173744 34-35 22.023184059085587 27.3507658528244 28.768313686970775 21.857736401119237 36-37 22.1560135351258 27.386950982264896 28.573241294061415 21.88379418854789 38-39 21.85819482291704 27.37689705450565 28.83164541019296 21.933262712384355 40-41 22.13228906895929 27.220549726069226 28.738091447726806 21.90906975724468 42-43 22.081107757051267 27.2829979301085 28.66474364291963 21.971150669920608 44-45 22.005526977475956 27.487559999295776 28.560965206410383 21.94594781681789 46-47 22.247209746102094 27.302697271477317 28.266242537388287 22.183850445032302 48-49 22.07401791632411 27.403144927318312 28.26969054250057 22.25314661385701 50-51 21.908894841467813 27.591369954485796 28.395131847917575 22.10460335612881 52-53 22.136441422290773 27.50805591808217 28.43017119495363 21.925331464673427 54-55 22.07196693310338 27.466263556764286 28.243808248482637 22.217961261649695 56-57 22.195618109598602 27.659363098587313 28.090015794807748 22.05500299700633 58-59 21.911868554118385 27.79008237927203 28.298240036263252 21.999809030346338 60-61 22.243053699161976 27.95182233443663 28.066528549225474 21.73859541717592 62-63 21.864228160156195 28.117778673418712 28.037351771720743 21.98064139470435 64-65 21.87468756546726 28.10593278685977 28.013787036049788 22.005592611623182 66-67 21.925068725820317 28.119682091404936 28.063145072951777 21.89210410982297 68-69 21.936970542277738 28.1839143262316 27.97009648750904 21.909018643981625 70-71 21.982284695006467 27.874792540801273 27.890229058754734 22.252693705437522 72-73 22.129754602593398 27.579545910117464 27.92773048602852 22.36296900126062 74-75 21.965859571068123 27.748353469752267 28.114959993193196 22.17082696598641 76-77 22.150835804916586 27.513793363684407 27.987683363228435 22.347687468170573 78-79 22.11572458067766 27.514904389999582 27.76331184073994 22.606059188582815 80-81 22.29805509283492 27.75160115658616 27.740439863123424 22.2099038874555 82-83 22.32518967078945 27.540694044666136 27.80567798192206 22.328438302622352 84-85 22.202131486581376 27.53027488430122 27.771519645519426 22.496073983597974 86-87 22.116071618055898 27.701876755257814 27.856928950229083 22.325122676457205 88-89 22.375275993839427 27.702955952286956 27.775706073338974 22.146061980534647 90-91 22.404946057720885 27.760911587742456 27.745973781209965 22.08816857332669 92-93 22.20898746609813 27.52921011830532 27.807676704675664 22.454125710920884 94-95 22.34759653303992 27.79205815167553 27.80164990350209 22.05869541178246 96-97 22.61245258434083 27.658244457754684 27.891968003552627 21.83733495435186 98-99 23.35305771836812 29.717619843332077 28.21008289720835 18.719239541091454 100 22.270956493311903 30.59623051007528 22.220018207244756 24.91279478936806 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 587.0 1 544.0 2 895.0 3 1429.0 4 1826.0 5 2555.5 6 3206.0 7 3955.0 8 5112.0 9 5827.5 10 5732.0 11 5633.5 12 6039.0 13 7108.0 14 9093.5 15 11249.5 16 13118.0 17 14539.5 18 14754.0 19 14036.0 20 13327.5 21 13340.5 22 14694.5 23 17808.5 24 23106.0 25 30297.5 26 39475.0 27 50003.0 28 60934.5 29 73123.0 30 84740.5 31 96512.5 32 109473.5 33 121136.0 34 132363.0 35 142417.5 36 152417.5 37 162969.5 38 171743.0 39 178791.0 40 186481.0 41 194084.5 42 199350.0 43 203762.5 44 207892.5 45 213084.0 46 224545.5 47 229600.5 48 225809.0 49 221126.0 50 213661.0 51 204473.0 52 194292.0 53 184611.0 54 173774.0 55 161707.0 56 149015.5 57 135382.5 58 120954.0 59 105785.5 60 89262.5 61 73179.5 62 58133.0 63 44946.0 64 34140.5 65 25249.0 66 18525.5 67 14054.5 68 10685.0 69 7785.5 70 5602.0 71 4017.5 72 2815.0 73 1986.5 74 1369.5 75 900.5 76 603.5 77 393.5 78 238.0 79 150.0 80 98.5 81 60.0 82 40.0 83 27.5 84 19.0 85 14.5 86 12.0 87 8.0 88 4.5 89 2.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 9.659026698515696E-5 5 0.001719306752335794 6 2.3181664076437673E-4 7 3.863610679406279E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 9.278083890115013E-4 30-31 0.0 32-33 0.0 34-35 9.72134919105737E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.934683430319024E-6 44-45 1.0003216033954916E-5 46-47 3.02430939894875E-5 48-49 8.127890735139269E-5 50-51 3.070088587406189E-4 52-53 1.8538258330629839E-4 54-55 2.9020512112539886E-4 56-57 3.4436235518389E-4 58-59 3.672479852513209E-4 60-61 2.110703663221189E-5 62-63 3.7219768376064283E-4 64-65 7.501102126219545E-5 66-67 1.7292883405651811E-4 68-69 5.018660689659987E-4 70-71 1.2120020819992128E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.037200446532831E-4 90-91 0.0 92-93 1.2106188707879845E-5 94-95 6.109392335400752E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 73.0 20-21 162.0 22-23 272.0 24-25 368.0 26-27 1343.0 28-29 4303.0 30-31 9647.0 32-33 13062.0 34-35 18201.0 36-37 28143.0 38-39 30595.0 40-41 29665.0 42-43 32981.0 44-45 37845.0 46-47 39163.0 48-49 36477.0 50-51 32017.0 52-53 30075.0 54-55 32375.0 56-57 33949.0 58-59 18897.0 60-61 36330.0 62-63 35588.0 64-65 38300.0 66-67 42300.0 68-69 44203.0 70-71 50688.0 72-73 36563.0 74-75 34929.0 76-77 36122.0 78-79 37323.0 80-81 36366.0 82-83 34382.0 84-85 34305.0 86-87 35464.0 88-89 37305.0 90-91 37364.0 92-93 37045.0 94-95 45196.0 96-97 173903.0 98-99 359344.0 100-101 3523872.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.18027621590763 #Duplication Level Percentage of deduplicated Percentage of total 1 91.25272086038775 80.4669013092211 2 6.440683637911325 11.35882524420595 3 1.4074681846278443 3.723327998567562 4 0.462823523617895 1.6324762460738254 5 0.18715839616054988 0.8251839534781779 6 0.09299150389938925 0.49200098997484765 7 0.05303600505806404 0.32737107027858525 8 0.028308111006871604 0.19969736381892106 9 0.019923730404248788 0.1581192045268142 >10 0.05379420382839296 0.6987375969357749 >50 8.135127105168829E-4 0.046203861269351665 >100 2.173504440740865E-4 0.03811209617534037 >500 6.097994303161898E-5 0.0330430654737081 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9318053397031395E-5 0.0 0.0 0.0 3 0.0 1.9318053397031395E-5 0.0 0.0 0.0 4 0.0 3.863610679406279E-5 0.0 1.9318053397031395E-5 0.0 5 0.0 5.795416019109418E-5 0.0 1.9318053397031395E-5 0.0 6 0.0 5.795416019109418E-5 0.0 1.9318053397031395E-5 0.0 7 0.0 5.795416019109418E-5 0.0 1.9318053397031395E-5 0.0 8 0.0 1.1590832038218836E-4 0.0 1.9318053397031395E-5 0.0 9 0.0 2.1249858736734534E-4 0.0 1.9318053397031395E-5 0.0 10-11 0.0 2.1249858736734534E-4 0.0 1.9318053397031395E-5 0.0 12-13 0.0 2.1249858736734534E-4 0.0 1.9318053397031395E-5 0.0 14-15 0.0 3.380659344480494E-4 0.0 2.8977080095547095E-5 9.659026698515698E-6 16-17 0.0 3.477249611465651E-4 0.0 3.863610679406279E-5 1.9318053397031395E-5 18-19 0.0 3.960200946391436E-4 0.0 5.795416019109418E-5 1.9318053397031395E-5 20-21 0.0 4.443152281317221E-4 0.0 7.727221358812558E-5 1.9318053397031395E-5 22-23 0.0 4.7329230822726917E-4 0.0 1.2556734708070406E-4 2.8977080095547095E-5 24-25 0.0 5.602235485139105E-4 0.0 1.7386248057328255E-4 3.863610679406279E-5 26-27 0.0 5.602235485139105E-4 0.0 2.1249858736734534E-4 3.863610679406279E-5 28-29 0.0 5.602235485139105E-4 0.0 7.147679756901616E-4 3.863610679406279E-5 30-31 0.0 6.181777087050046E-4 0.0 0.0020187365799897807 3.863610679406279E-5 32-33 0.0 6.374957621020361E-4 0.0 0.00408576829347214 3.863610679406279E-5 34-35 0.0 7.34086029087193E-4 0.0 0.007166997810298647 5.795416019109418E-5 36-37 0.0 8.306762960723499E-4 0.0 0.011841966732380246 5.795416019109418E-5 38-39 0.0 8.403353227708656E-4 0.0 0.027325386530100908 5.795416019109418E-5 40-41 0.0 9.272665630575069E-4 0.0 0.043851981211261264 5.795416019109418E-5 42-43 0.0 9.465846164545383E-4 0.0 0.05207181293169813 5.795416019109418E-5 44-45 0.0 0.001052833910138211 0.0 0.062435948579205466 5.795416019109418E-5 46-47 0.0 0.0011397651504248523 0.0 0.07406541672421836 5.795416019109418E-5 48-49 0.0 0.001149424177123368 0.0 0.08493182176004853 5.795416019109418E-5 50-51 0.0 0.0014005588712847762 0.0 0.09705390026668573 7.727221358812558E-5 52-53 0.0 0.0014102178979832917 0.0 0.12894800642518456 7.727221358812558E-5 54-55 0.0 0.0014778310848729017 0.0 0.16483129061017038 9.659026698515697E-5 56-57 0.0 0.0015551032984610271 0.0 0.20926281342334258 1.1590832038218836E-4 58-59 0.0 0.0015647623251595429 0.0 0.39599111755904803 1.1590832038218836E-4 60-61 0.0 0.0015937394052550902 0.0 0.5608610442760125 1.1590832038218836E-4 62-63 0.0 0.0016227164853506372 0.0 0.5678541796057378 1.1590832038218836E-4 64-65 0.0 0.0016806706455417314 0.0 0.5733501657971933 1.1590832038218836E-4 66-67 0.0 0.0017096477256372785 0.0 0.5784984270275022 1.2556734708070406E-4 68-69 0.0 0.0017869199392254041 0.0 0.584226229859722 1.3522637377921977E-4 70-71 0.0 0.0017965789659239197 0.0 0.5887659724080243 1.3522637377921977E-4 72-73 0.0 0.0018062379926224352 0.0 0.5918858380316449 1.7386248057328255E-4 74-75 0.0 0.0018448740994164983 0.0 0.5945903655072293 1.7386248057328255E-4 76-77 0.0 0.0019318053397031393 0.0 0.597227279795924 1.8352150727179826E-4 78-79 0.0 0.0019897594998942334 0.0 0.599062494868642 1.9318053397031395E-4 80-81 0.0 0.0019897594998942334 0.0 0.5996806725773471 2.0283956066882963E-4 82-83 0.0 0.0019897594998942334 0.0 0.6000573746185892 2.1249858736734534E-4 84-85 0.0 0.0019897594998942334 0.0 0.6002698732059566 2.1249858736734534E-4 86-87 0.0 0.002047713660085328 0.0 0.6003857815263387 2.1249858736734534E-4 88 0.0 0.0022215761406586105 0.0 0.6004050995797358 2.1249858736734534E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5375 0.0 47.20003 1 GTATCAA 9540 0.0 36.706894 1 ATCAACG 10735 0.0 31.978767 3 TCAACGC 10820 0.0 31.727549 4 CAACGCA 11160 0.0 30.760939 5 AACGCAG 11485 0.0 29.927397 6 TATCAAC 11810 0.0 29.32322 2 ACGCAGA 13310 0.0 25.856014 7 GTACATG 14105 0.0 25.193373 1 TACATGG 13860 0.0 25.079323 2 CGCAGAG 13740 0.0 25.01549 8 ACATGGG 14085 0.0 24.005917 3 GTCAACG 795 0.0 23.839163 1 CTTATAC 6975 0.0 22.478258 1 CATGGGG 10170 0.0 22.235342 4 TATACAC 8610 0.0 21.061264 3 GCAGAGT 17190 0.0 20.0701 9 GCGCAGA 1160 0.0 19.679922 1 GAGTACT 9710 0.0 19.162731 12-13 TTATACA 9095 0.0 18.42266 2 >>END_MODULE