##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139753_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1766255 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.764162026434462 25.0 18.0 32.0 18.0 33.0 2 28.414625860931746 31.0 27.0 32.0 18.0 33.0 3 31.325481314985662 32.0 31.0 33.0 27.0 33.0 4 31.641325856119302 33.0 32.0 33.0 30.0 33.0 5 32.484679165805616 33.0 33.0 33.0 32.0 33.0 6 36.46402812730891 38.0 37.0 38.0 34.0 38.0 7 37.01755861979159 38.0 38.0 38.0 35.0 38.0 8 36.970601074023854 38.0 38.0 38.0 35.0 38.0 9 37.21073854001829 38.0 38.0 38.0 36.0 38.0 10-11 37.323695615865205 38.0 38.0 38.0 37.0 38.0 12-13 37.34395344953022 38.0 38.0 38.0 37.0 38.0 14-15 37.3389051977206 38.0 38.0 38.0 37.0 38.0 16-17 37.29059620496474 38.0 38.0 38.0 37.0 38.0 18-19 37.28328412375336 38.0 38.0 38.0 37.0 38.0 20-21 37.34737438008948 38.0 38.0 38.0 37.0 38.0 22-23 37.36833996949016 38.0 38.0 38.0 37.0 38.0 24-25 37.370088630433656 38.0 38.0 38.0 37.0 38.0 26-27 37.279209727506625 38.0 38.0 38.0 37.0 38.0 28-29 37.19379371286709 38.0 38.0 38.0 36.5 38.0 30-31 37.277074099694595 38.0 38.0 38.0 37.0 38.0 32-33 37.300149892238395 38.0 38.0 38.0 37.0 38.0 34-35 37.25381541195081 38.0 38.0 38.0 37.0 38.0 36-37 37.26137484207166 38.0 38.0 38.0 37.0 38.0 38-39 37.25502807806059 38.0 38.0 38.0 37.0 38.0 40-41 37.22807430158866 38.0 38.0 38.0 37.0 38.0 42-43 37.23027301169293 38.0 38.0 38.0 37.0 38.0 44-45 37.17156747284989 38.0 38.0 38.0 36.5 38.0 46-47 37.15442787011254 38.0 38.0 38.0 36.0 38.0 48-49 37.138380025184716 38.0 38.0 38.0 36.0 38.0 50-51 37.13664221419239 38.0 38.0 38.0 36.0 38.0 52-53 37.11626839747046 38.0 38.0 38.0 36.0 38.0 54-55 37.07207914884083 38.0 38.0 38.0 36.0 38.0 56-57 37.06727514937684 38.0 38.0 38.0 36.0 38.0 58-59 37.075087925302114 38.0 38.0 38.0 36.0 38.0 60-61 37.07858878761877 38.0 38.0 38.0 36.0 38.0 62-63 37.001252311078304 38.0 38.0 38.0 36.0 38.0 64-65 37.03024069147773 38.0 38.0 38.0 36.0 38.0 66-67 37.04559202849205 38.0 38.0 38.0 36.0 38.0 68-69 37.010533193387474 38.0 38.0 38.0 36.0 38.0 70-71 36.96086361009924 38.0 38.0 38.0 36.0 38.0 72-73 36.971096828347925 38.0 38.0 38.0 36.0 38.0 74-75 36.989602382838925 38.0 38.0 38.0 36.0 38.0 76-77 36.919369795552164 38.0 38.0 38.0 35.5 38.0 78-79 36.942250626424716 38.0 38.0 38.0 36.0 38.0 80-81 36.910236164160665 38.0 38.0 38.0 35.5 38.0 82-83 36.848774227362014 38.0 38.0 38.0 35.0 38.0 84-85 36.89150788822214 38.0 38.0 38.0 35.0 38.0 86-87 36.91788312497492 38.0 38.0 38.0 35.0 38.0 88-89 36.825120517327186 38.0 38.0 38.0 35.0 38.0 90-91 36.78224415645337 38.0 38.0 38.0 35.0 38.0 92-93 36.834954269960306 38.0 38.0 38.0 35.0 38.0 94-95 36.80097961322532 38.0 38.0 38.0 35.0 38.0 96-97 36.715564647218244 38.0 38.0 38.0 34.5 38.0 98-99 36.74103097675375 38.0 38.0 38.0 34.5 38.0 100 35.12324979977034 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 31.0 21 66.0 22 203.0 23 438.0 24 1017.0 25 1820.0 26 3184.0 27 4992.0 28 7400.0 29 10664.0 30 14710.0 31 19411.0 32 25587.0 33 35879.0 34 53733.0 35 102659.0 36 319507.0 37 1164945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.53033961687299 15.350727952645569 12.644493575389737 24.474438855091705 2 14.885976131392276 20.56743852664369 41.513928072592094 23.032657269371942 3 18.36326011815961 25.721993709855035 30.190544400440476 25.72420177154488 4 12.177976667002593 17.8067254200132 38.74867374681104 31.266624166173155 5 13.41949086807887 37.37910636375269 36.031370914868006 13.170031853300435 6 30.384560727281375 37.66654644956628 18.78076081005566 13.168132013096681 7 26.839684439497375 32.266593592993985 23.05376236939874 17.839959598109896 8 24.617623163133295 36.407993183317245 21.521977290934775 17.452406362614685 9 25.649637226787753 16.399953574087547 21.050357960770107 36.9000512383546 10-11 24.19384516958197 26.56671884863737 29.2388981205998 20.00053786118086 12-13 24.854253774228525 23.92021537094021 29.248154994607233 21.977375860224033 14-15 21.911077392562227 25.454280384202733 26.50528944008651 26.129352783148523 16-17 22.003985834435007 28.666698749614294 27.154714353250238 22.17460106270046 18-19 22.03679536646747 27.901973384364094 28.616564425861498 21.44466682330694 20-21 22.506365263355164 27.258529056570875 28.524730966064947 21.710374714009014 22-23 22.279251043292426 27.29795401161897 28.288009575557417 22.13478536953119 24-25 22.132279768468646 27.319737212762252 28.47674281985258 22.07124019891652 26-27 22.19135005470348 27.456276856237444 28.411803946352084 21.940569142706995 28-29 22.096523977758398 27.38180785106703 28.407951166137615 22.11371700503696 30-31 22.229543932435107 27.219446966401854 28.488018323682475 22.06299077748056 32-33 21.980584366915007 27.53178025694688 28.399511540675487 22.088123835462625 34-35 22.280745085404163 27.41812757794257 28.371177580093377 21.929949756559893 36-37 22.1257573655904 27.398580578550806 28.494706842137624 21.98095521372117 38-39 21.93025031059789 27.415785323007448 28.54734959336518 22.106614773029477 40-41 22.279740584685403 27.213108417497928 28.515809905562 21.991341092254665 42-43 22.127891383782927 27.308806735198658 28.4500300367722 22.11327184424621 44-45 22.086764333727476 27.39322584722152 28.387156657938295 22.132853161112706 46-47 22.221529725221437 27.238170722134893 28.32761876315397 22.2126807894897 48-49 22.06569864402604 27.468599869235216 28.243091023660842 22.2226104630779 50-51 21.9984551546172 27.584821163725888 28.14116822149899 22.275555460157925 52-53 22.05747495186325 27.385494872084386 28.242517221994206 22.314512954058156 54-55 22.133763434304857 27.176482155382043 28.361650605120868 22.32810380519223 56-57 22.11596562727884 27.043567462938338 28.356956780557724 22.483510129225095 58-59 21.864547919768704 26.97884742737122 28.517507299818078 22.639097353041997 60-61 22.1228713351729 27.328385464739068 28.480319264397895 22.068423935690134 62-63 21.609470199637727 27.67458009240873 28.47186570706239 22.244084000891153 64-65 21.465969065030357 27.927499650315447 28.186829980780303 22.419701303873897 66-67 21.465808646315292 28.416172619285195 27.785091691714435 22.33292704268508 68-69 21.651870310599623 28.348563176394524 27.6478314503484 22.35173506265745 70-71 21.721196651833612 27.803717665328914 27.650858171439385 22.82422751139809 72-73 21.96469042162893 27.236376294140126 27.74072677421267 23.058206510018277 74-75 21.991867956241194 27.2837627186257 27.86622464056265 22.858144684570462 76-77 22.282035252646956 27.210136975607757 27.307940131799114 23.199887639946173 78-79 22.448545376296945 27.278131402109278 26.893412486440223 23.37991073515355 80-81 22.26122842574284 27.57905010562541 27.07954687968061 23.080174588951145 82-83 22.274091691309938 27.401147516508157 27.132472543159558 23.192288249022344 84-85 22.405195859013833 27.620945064478196 27.144273158631698 22.82958591787627 86-87 22.69754017640961 27.59528488666386 27.150787707894825 22.556387229031706 88-89 22.481386851287123 27.732737230116882 27.44828824699687 22.337587671599128 90-91 22.553024158199367 27.390812445335698 27.224433661823046 22.831729734641886 92-93 22.54847715269085 26.99848795302638 27.494587907576385 22.958446986706388 94-95 21.951709127307677 27.400416058825712 27.994083604999854 22.653791208866757 96-97 22.061111897015138 27.303176918300746 28.224426779799682 22.411284404884434 98-99 23.187941194170286 29.2411507581604 28.493001261487468 19.07790678618185 100 22.216888125496553 30.260009070644884 22.167916292743804 25.35518651111476 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 138.0 1 143.0 2 258.5 3 410.0 4 523.5 5 729.5 6 911.5 7 1113.5 8 1374.0 9 1538.5 10 1525.5 11 1486.0 12 1619.5 13 1924.0 14 2433.0 15 3045.0 16 3626.5 17 4026.5 18 4091.0 19 3950.0 20 3796.5 21 3724.5 22 3989.0 23 4820.5 24 6268.5 25 8181.5 26 10860.5 27 14200.5 28 17706.0 29 21757.0 30 25903.5 31 29903.5 32 34183.0 33 38279.0 34 41929.5 35 45636.5 36 50215.0 37 54530.5 38 57905.5 39 61122.0 40 64907.5 41 68182.0 42 70190.0 43 72373.5 44 75430.0 45 79189.5 46 79480.0 47 77837.0 48 77021.5 49 75373.0 50 73481.0 51 70762.0 52 66942.5 53 62848.5 54 58906.0 55 54025.0 56 48822.0 57 43939.0 58 38876.0 59 33331.5 60 27664.0 61 22486.0 62 17716.0 63 13654.0 64 10227.5 65 7392.0 66 5400.0 67 4173.5 68 3143.5 69 2284.5 70 1667.5 71 1201.0 72 844.0 73 555.0 74 368.0 75 258.5 76 180.0 77 109.5 78 67.0 79 46.5 80 31.0 81 22.0 82 16.5 83 9.5 84 5.0 85 2.0 86 2.5 87 3.0 88 2.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.1323393281264595E-4 3 0.0 4 5.6616966406322976E-5 5 0.0018683598914086585 6 3.397017984379379E-4 7 5.6616966406322976E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0011046468812136387 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.9007014476240646E-5 44-45 2.9188609203635497E-5 46-47 5.879688059029716E-5 48-49 2.9611503002902517E-4 50-51 5.664202241831625E-4 52-53 1.7922431715535164E-4 54-55 4.7815332404719727E-4 56-57 6.577666847751828E-4 58-59 4.486653551679818E-4 60-61 9.019439598165927E-5 62-63 5.751296387610738E-4 64-65 9.142071447116774E-5 66-67 2.1491398681717605E-4 68-69 6.19263299608254E-4 70-71 1.56170060450307E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0010051099791339169 90-91 0.0 92-93 3.4070447464221774E-5 94-95 3.437365190833922E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 23.0 20-21 50.0 22-23 97.0 24-25 132.0 26-27 436.0 28-29 1337.0 30-31 3350.0 32-33 4369.0 34-35 6045.0 36-37 9266.0 38-39 5309.0 40-41 9753.0 42-43 10172.0 44-45 12039.0 46-47 12362.0 48-49 11619.0 50-51 5817.0 52-53 779.0 54-55 804.0 56-57 692.0 58-59 5852.0 60-61 11456.0 62-63 10981.0 64-65 11644.0 66-67 13499.0 68-69 13740.0 70-71 15826.0 72-73 11718.0 74-75 11315.0 76-77 11763.0 78-79 12064.0 80-81 12002.0 82-83 11286.0 84-85 11368.0 86-87 11854.0 88-89 12189.0 90-91 12594.0 92-93 12580.0 94-95 15445.0 96-97 60022.0 98-99 139034.0 100-101 1243572.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.93599599761451 #Duplication Level Percentage of deduplicated Percentage of total 1 93.98169327702473 86.40300576965579 2 4.662972390028724 8.573900219733353 3 0.8341673916176077 2.3007002993129073 4 0.26669256585822176 0.9807458666934006 5 0.10641611779719287 0.48917358899421987 6 0.05396279761554253 0.29766741273615605 7 0.030428678428411574 0.19582436007450016 8 0.017430505128600518 0.1281992679791533 9 0.0122380322906515 0.10126041189228122 >10 0.033168890432982504 0.45280168282126043 >50 6.047404555973308E-4 0.039757847350262325 >100 2.2461332178438267E-4 0.036963272756681265 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.661696640632298E-5 0.0 5 0.0 0.0 0.0 5.661696640632298E-5 0.0 6 0.0 0.0 0.0 5.661696640632298E-5 0.0 7 0.0 0.0 0.0 5.661696640632298E-5 0.0 8 5.661696640632298E-5 0.0 0.0 5.661696640632298E-5 0.0 9 5.661696640632298E-5 5.661696640632298E-5 0.0 5.661696640632298E-5 0.0 10-11 5.661696640632298E-5 5.661696640632298E-5 0.0 5.661696640632298E-5 0.0 12-13 5.661696640632298E-5 5.661696640632298E-5 0.0 5.661696640632298E-5 0.0 14-15 5.661696640632298E-5 1.1323393281264597E-4 0.0 5.661696640632298E-5 5.661696640632298E-5 16-17 8.492544960948448E-5 1.4154241601580745E-4 0.0 5.661696640632298E-5 5.661696640632298E-5 18-19 1.1323393281264597E-4 1.6985089921896896E-4 0.0 5.661696640632298E-5 1.1323393281264597E-4 20-21 1.1323393281264597E-4 1.6985089921896896E-4 0.0 1.1323393281264597E-4 1.1323393281264597E-4 22-23 1.1323393281264597E-4 2.547763488284534E-4 0.0 1.1323393281264597E-4 1.6985089921896896E-4 24-25 1.1323393281264597E-4 3.113933152347764E-4 0.0 1.6985089921896896E-4 2.2646786562529193E-4 26-27 1.1323393281264597E-4 3.397017984379379E-4 0.0 2.830848320316149E-4 2.2646786562529193E-4 28-29 1.1323393281264597E-4 3.397017984379379E-4 0.0 9.341799457043292E-4 2.2646786562529193E-4 30-31 1.1323393281264597E-4 4.5293573125058386E-4 0.0 0.002745922870706665 2.547763488284534E-4 32-33 1.1323393281264597E-4 4.5293573125058386E-4 0.0 0.006510951136727143 2.830848320316149E-4 34-35 1.4154241601580745E-4 4.8124421445374537E-4 0.0 0.010191053953138136 2.830848320316149E-4 36-37 1.6985089921896896E-4 5.095526976569069E-4 0.0 0.02015564004065098 2.830848320316149E-4 38-39 1.6985089921896896E-4 5.661696640632298E-4 0.0 0.17520120254436647 2.830848320316149E-4 40-41 2.2646786562529193E-4 5.661696640632298E-4 0.0 0.33763527916410707 2.830848320316149E-4 42-43 2.2646786562529193E-4 5.944781472663913E-4 0.0 0.3627165952821082 3.113933152347764E-4 44-45 2.2646786562529193E-4 6.227866304695528E-4 0.0 0.3974227956891842 3.397017984379379E-4 46-47 2.830848320316149E-4 6.227866304695528E-4 0.0 0.4332330269411835 3.397017984379379E-4 48-49 2.830848320316149E-4 6.227866304695528E-4 0.0 0.4653065384103654 3.397017984379379E-4 50-51 2.830848320316149E-4 7.360205632821988E-4 0.0 0.499927813367832 3.397017984379379E-4 52-53 2.830848320316149E-4 7.360205632821988E-4 0.0 0.923281179671112 3.6801028164109943E-4 54-55 2.830848320316149E-4 7.360205632821988E-4 0.0 1.4963864221191163 3.963187648442609E-4 56-57 2.830848320316149E-4 7.360205632821988E-4 0.0 2.1149833970746013 3.963187648442609E-4 58-59 3.113933152347764E-4 7.360205632821988E-4 0.0 2.7429221714871295 3.963187648442609E-4 60-61 3.397017984379379E-4 7.360205632821988E-4 0.0 2.9094609781713285 3.963187648442609E-4 62-63 3.397017984379379E-4 7.360205632821988E-4 0.0 2.916170088690478 3.963187648442609E-4 64-65 3.397017984379379E-4 8.492544960948447E-4 0.0 2.9220299447135325 3.963187648442609E-4 66-67 3.397017984379379E-4 8.492544960948447E-4 0.0 2.9271254716901014 3.963187648442609E-4 68-69 3.397017984379379E-4 8.492544960948447E-4 0.0 2.9313434356873724 3.963187648442609E-4 70-71 3.397017984379379E-4 8.492544960948447E-4 0.0 2.9352216978862056 3.963187648442609E-4 72-73 3.397017984379379E-4 8.492544960948447E-4 0.0 2.9385054819377725 4.5293573125058386E-4 74-75 3.397017984379379E-4 9.058714625011677E-4 0.0 2.941591106606917 4.5293573125058386E-4 76-77 3.397017984379379E-4 9.058714625011677E-4 0.0 2.944337029477624 4.5293573125058386E-4 78-79 3.397017984379379E-4 9.058714625011677E-4 0.0 2.9459223045370004 4.5293573125058386E-4 80-81 3.963187648442609E-4 9.058714625011677E-4 0.0 2.9464884742010637 4.8124421445374537E-4 82-83 3.963187648442609E-4 9.058714625011677E-4 0.0 2.9469131014491112 5.095526976569069E-4 84-85 3.963187648442609E-4 9.058714625011677E-4 0.0 2.9470263353819237 5.095526976569069E-4 86-87 3.963187648442609E-4 9.058714625011677E-4 0.0 2.947054643865127 5.095526976569069E-4 88 3.963187648442609E-4 9.058714625011677E-4 0.0 2.9470829523483304 5.095526976569069E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1620 0.0 43.34181 1 GTATCAA 2625 0.0 33.76946 1 ATCAACG 2840 0.0 30.285852 3 TCAACGC 2870 0.0 29.969275 4 CAACGCA 2910 0.0 29.708128 5 AACGCAG 2975 0.0 29.20655 6 GTCAACG 220 0.0 27.925917 1 TATCAAC 3230 0.0 27.036634 2 GTACATG 4055 0.0 25.648355 1 TACATGG 3935 0.0 25.203785 2 ACGCAGA 3560 0.0 24.40716 7 ATCTCGT 2575 0.0 24.097933 94 CGCAGAG 3640 0.0 23.870739 8 ACATGGG 4180 0.0 23.411575 3 TAGATCG 120 2.9254466E-4 21.941793 5 GAGTACA 2710 0.0 21.375029 1 TATCTCG 2920 0.0 19.975702 94 CATGGGG 3275 0.0 19.965355 4 GTGGTAT 860 0.0 19.390419 1 GTATAGC 545 0.0 19.324879 1 >>END_MODULE