##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139752_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7867615 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27972377906138 33.0 33.0 34.0 31.0 34.0 2 31.320894070185183 33.0 32.0 33.0 27.0 34.0 3 32.51543167783375 33.0 33.0 33.0 31.0 34.0 4 32.92738828730181 33.0 33.0 34.0 32.0 34.0 5 33.160324189732215 34.0 33.0 34.0 33.0 34.0 6 37.079497026735545 38.0 37.0 38.0 36.0 38.0 7 37.13085769956969 38.0 38.0 38.0 36.0 38.0 8 37.33527250634405 38.0 38.0 38.0 37.0 38.0 9 37.322267929988946 38.0 38.0 38.0 37.0 38.0 10-11 37.37698203330997 38.0 38.0 38.0 37.0 38.0 12-13 37.387159704688145 38.0 38.0 38.0 37.0 38.0 14-15 37.392076251824726 38.0 38.0 38.0 37.0 38.0 16-17 37.35419800028344 38.0 38.0 38.0 37.0 38.0 18-19 37.33248354170864 38.0 38.0 38.0 37.0 38.0 20-21 37.39126953745793 38.0 38.0 38.0 37.0 38.0 22-23 37.40695044292559 38.0 38.0 38.0 37.0 38.0 24-25 37.40869997128845 38.0 38.0 38.0 37.0 38.0 26-27 37.313207568440404 38.0 38.0 38.0 37.0 38.0 28-29 37.21798639568485 38.0 38.0 38.0 37.0 38.0 30-31 37.30203302478146 38.0 38.0 38.0 37.0 38.0 32-33 37.32481297276297 38.0 38.0 38.0 37.0 38.0 34-35 37.284360620424124 38.0 38.0 38.0 37.0 38.0 36-37 37.29158413594297 38.0 38.0 38.0 37.0 38.0 38-39 37.295668999487134 38.0 38.0 38.0 37.0 38.0 40-41 37.25867392447162 38.0 38.0 38.0 37.0 38.0 42-43 37.26376608051247 38.0 38.0 38.0 37.0 38.0 44-45 37.20958265189136 38.0 38.0 38.0 37.0 38.0 46-47 37.19822333203856 38.0 38.0 38.0 37.0 38.0 48-49 37.185474040171655 38.0 38.0 38.0 37.0 38.0 50-51 37.18902275104975 38.0 38.0 38.0 37.0 38.0 52-53 37.174834252022364 38.0 38.0 38.0 36.5 38.0 54-55 37.1280924117618 38.0 38.0 38.0 36.0 38.0 56-57 37.13363673499455 38.0 38.0 38.0 36.0 38.0 58-59 37.148739285867244 38.0 38.0 38.0 36.0 38.0 60-61 37.16199286948343 38.0 38.0 38.0 36.0 38.0 62-63 37.09278699186824 38.0 38.0 38.0 36.0 38.0 64-65 37.123064754833855 38.0 38.0 38.0 36.0 38.0 66-67 37.14963107843809 38.0 38.0 38.0 36.0 38.0 68-69 37.1232154551611 38.0 38.0 38.0 36.0 38.0 70-71 37.075184218521436 38.0 38.0 38.0 36.0 38.0 72-73 37.08915072229436 38.0 38.0 38.0 36.0 38.0 74-75 37.11381546271842 38.0 38.0 38.0 36.0 38.0 76-77 37.055603950344434 38.0 38.0 38.0 36.0 38.0 78-79 37.08300704647187 38.0 38.0 38.0 36.0 38.0 80-81 37.06470885324387 38.0 38.0 38.0 36.0 38.0 82-83 37.010578268852896 38.0 38.0 38.0 36.0 38.0 84-85 37.04895402593605 38.0 38.0 38.0 36.0 38.0 86-87 37.07585465432142 38.0 38.0 38.0 36.0 38.0 88-89 36.986513978411615 38.0 38.0 38.0 36.0 38.0 90-91 36.95028654706287 38.0 38.0 38.0 36.0 38.0 92-93 37.011786900530325 38.0 38.0 38.0 36.0 38.0 94-95 36.99893914404826 38.0 38.0 38.0 36.0 38.0 96-97 36.949179788978824 38.0 38.0 38.0 36.0 38.0 98-99 36.95963119967821 38.0 38.0 38.0 35.5 38.0 100 35.51745965537764 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 20.0 20 51.0 21 166.0 22 470.0 23 1404.0 24 3294.0 25 6511.0 26 11619.0 27 18827.0 28 28618.0 29 40729.0 30 56161.0 31 75579.0 32 99182.0 33 135294.0 34 199667.0 35 364708.0 36 1017345.0 37 5807965.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18527469887634 20.118384033789148 12.749746905510756 24.946594361823752 2 15.115178590494086 21.573088033872555 40.45506588533643 22.85666749029692 3 18.00521504928749 26.804921186407825 30.275629908174206 24.91423385613048 4 12.360902855796288 17.852314291513828 39.5518945835287 30.234888269161182 5 13.070254166851502 37.77235680799391 36.22524925988806 12.932139765266529 6 29.6948414392122 38.340356668668974 19.127986209740172 12.836815682378653 7 26.140486409592345 32.57019160080167 24.096497944483254 17.192824045122737 8 24.417526785436248 36.38543573878488 21.974168791940123 17.222868683838747 9 25.922328431170055 16.254964179106373 21.259873544905286 36.56283384481828 10-11 23.904658527393625 26.635441617313504 29.812687834877533 19.647212020415335 12-13 24.768548028849914 24.288161024656137 29.60853447963582 21.334756466858128 14-15 21.968773255935883 25.609565287574444 26.864005165478993 25.557656291010684 16-17 21.801238367662883 28.652673014630224 27.542374658648143 22.00371395905875 18-19 21.868749296959752 28.112693618078666 28.865958743532826 21.152598341428757 20-21 22.526480410457484 27.42773003009591 28.66814091465233 21.377648644794277 22-23 22.25090498137287 27.346694649198728 28.552001839515494 21.85039852991291 24-25 22.03383625615328 27.412155873448224 28.631186740064063 21.92282113033444 26-27 22.04629401453045 27.587730636295284 28.54024858038558 21.82572676878869 28-29 22.03495474878643 27.52891203414343 28.551399094098283 21.884734122971853 30-31 22.19814196957233 27.473936241368563 28.506291335474803 21.821630453584305 32-33 21.984813885365735 27.630375493509195 28.520416614015907 21.86439400710916 34-35 22.1531385442889 27.58944866721497 28.478734677540114 21.778678110956015 36-37 22.143526518895595 27.53261615034918 28.46939625671505 21.854461074040174 38-39 21.98481924730245 27.642765202781206 28.567259982878674 21.80515556703767 40-41 22.20624830393663 27.51879827867873 28.478352205264684 21.796601212119956 42-43 22.056650412337113 27.587902954416695 28.378104219059153 21.977342414187046 44-45 22.139905023992956 27.633739969358984 28.2991616469103 21.92719335973776 46-47 22.18417234661148 27.607390975630075 28.15891300693017 22.04952367082828 48-49 22.07466496019785 27.666499724688485 28.226285413947604 22.032549901166053 50-51 22.082796572570945 27.767179907953327 28.14929120852688 22.00073231094885 52-53 22.222332709669026 27.68966739836978 28.04709578184385 22.040904110117342 54-55 22.23036880626427 27.608436254710234 28.09611876152074 22.065076177504757 56-57 22.121710241277913 27.723244713866848 28.097749160652658 22.057295884202585 58-59 22.1518446330531 27.687644862576555 28.07473148066974 22.085779023700603 60-61 22.164018779350478 27.683252239182014 28.135111176444315 22.017617805023193 62-63 22.190270016794123 27.700754797279842 28.1038262252429 22.005148960683137 64-65 22.16579986976098 27.653431831524838 28.076750440389315 22.104017858324866 66-67 22.15785639200039 27.757445142742394 27.96764294878175 22.117055516475467 68-69 22.168979410380494 27.712825879524104 28.002769684149914 22.11542502594548 70-71 22.19811597051506 27.567445633419034 28.005526843126987 22.228911552938914 72-73 22.223666017722774 27.59624238133231 27.940938608112052 22.23915299283287 74-75 22.104958928522368 27.707709444417162 27.914637033389862 22.272694593670607 76-77 22.281405651746073 27.611057926934183 27.853784444216316 22.253751977103427 78-79 22.254558175027718 27.636797898312558 27.78295315514891 22.325690771510807 80-81 22.271217146928816 27.68134753861214 27.728403488416376 22.319031826042668 82-83 22.309851580474437 27.665603757143774 27.77503080696439 22.249513855417398 84-85 22.32762178751699 27.688367591948644 27.754820648475437 22.229189972058933 86-87 22.221576886169114 27.649920572255926 27.86945938351431 22.259043158060646 88-89 22.31138803871025 27.686361154068432 27.782213712099473 22.220037095121842 90-91 22.358977962048936 27.70688310805599 27.76195316563097 22.172185764264107 92-93 22.388861667683422 27.676969520921663 27.8029439233418 22.131224888053115 94-95 22.313799097381278 27.729433826777626 27.787964913007656 22.168802162833433 96-97 22.401176952150013 27.834797333375455 27.855542670919775 21.908483043554757 98-99 23.443583868298152 29.737289925162784 28.10025440216676 18.718871804372302 100 22.346610509369143 30.62748072863665 22.106726458679145 24.91918230331506 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1030.0 1 955.0 2 1436.5 3 2188.0 4 2634.5 5 3381.5 6 4212.0 7 5268.5 8 6615.5 9 7371.5 10 7269.0 11 7213.5 12 7937.0 13 9442.5 14 12048.5 15 14843.0 16 16749.5 17 17889.0 18 18009.0 19 17245.0 20 16573.5 21 17118.0 22 19584.5 23 24292.5 24 31659.0 25 41672.0 26 54571.5 27 69756.0 28 86331.0 29 105602.0 30 125303.5 31 144620.5 32 165557.5 33 186054.5 34 205590.5 35 223714.0 36 242401.5 37 260026.5 38 274237.0 39 287472.0 40 300784.5 41 312644.5 42 320622.0 43 327434.5 44 332784.0 45 336032.5 46 337045.5 47 334406.0 48 329432.0 49 322608.0 50 314379.0 51 302435.5 52 287794.0 53 271315.5 54 251696.5 55 232243.0 56 212202.5 57 190782.0 58 169636.0 59 146552.0 60 120990.0 61 96867.0 62 76050.0 63 58273.5 64 43648.5 65 32359.5 66 24065.5 67 18459.5 68 14123.0 69 10273.0 70 7490.5 71 5418.0 72 3743.0 73 2564.0 74 1752.5 75 1127.0 76 705.5 77 440.5 78 291.0 79 181.5 80 114.5 81 74.5 82 52.0 83 37.0 84 26.5 85 16.0 86 7.5 87 3.0 88 2.0 89 1.5 90 1.5 91 2.5 92 2.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.897232515825953E-5 3 0.0 4 2.5420664330931294E-5 5 0.002847114405064305 6 4.194409614603663E-4 7 8.897232515825953E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0010872533532387593 30-31 0.0 32-33 0.0 34-35 6.390981864438583E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.512933644147895E-6 44-45 6.5514244893295634E-6 46-47 6.5955751605362994E-6 48-49 8.631488173466884E-5 50-51 4.476698350777646E-4 52-53 2.0156453044769968E-4 54-55 3.040321144393094E-4 56-57 4.417508666472387E-4 58-59 3.3507959952653937E-4 60-61 4.817403876275855E-5 62-63 3.462265563939701E-4 64-65 9.754678204314243E-5 66-67 8.416883173451131E-5 68-69 4.8736936382052376E-4 70-71 9.24791409740643E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.776137811713858E-4 90-91 0.0 92-93 7.696852980025204E-6 94-95 6.207721054812858E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 72.0 20-21 192.0 22-23 324.0 24-25 482.0 26-27 1696.0 28-29 5199.0 30-31 13161.0 32-33 17557.0 34-35 24537.0 36-37 37301.0 38-39 40835.0 40-41 39161.0 42-43 42846.0 44-45 50521.0 46-47 50815.0 48-49 48400.0 50-51 42963.0 52-53 40239.0 54-55 43469.0 56-57 44565.0 58-59 46311.0 60-61 45284.0 62-63 44183.0 64-65 46641.0 66-67 49421.0 68-69 50235.0 70-71 49552.0 72-73 46296.0 74-75 46581.0 76-77 48349.0 78-79 50368.0 80-81 49443.0 82-83 47155.0 84-85 45809.0 86-87 47602.0 88-89 49982.0 90-91 51280.0 92-93 51176.0 94-95 62798.0 96-97 238831.0 98-99 550775.0 100-101 5605208.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.56705551941182 #Duplication Level Percentage of deduplicated Percentage of total 1 91.16357026106147 79.82925418398169 2 6.406773062392823 11.220445049096488 3 1.423231961092327 3.738846964619194 4 0.48094481474956374 1.6845968517979308 5 0.208459566320152 0.912709520875463 6 0.1156436189308384 0.6075942719629458 7 0.06332633713578055 0.388171061586692 8 0.03561824087130147 0.24951875807048313 9 0.023660654730374743 0.1864704479760323 >10 0.07712064262441302 1.0371615683403892 >50 0.0013067358025769095 0.07179919388036878 >100 3.0125076934364145E-4 0.04296136972192649 >500 4.285351904168094E-5 0.030470758090480315 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2710332165465647E-5 0.0 0.0 0.0 3 0.0 2.5420664330931294E-5 0.0 0.0 0.0 4 0.0 8.897232515825952E-5 0.0 2.5420664330931294E-5 0.0 5 0.0 1.0168265732372517E-4 0.0 2.5420664330931294E-5 0.0 6 0.0 1.1439298948919082E-4 0.0 2.5420664330931294E-5 0.0 7 0.0 1.1439298948919082E-4 0.0 2.5420664330931294E-5 0.0 8 0.0 1.2710332165465646E-4 0.0 2.5420664330931294E-5 0.0 9 0.0 2.0336531464745035E-4 0.0 2.5420664330931294E-5 0.0 10-11 0.0 2.0336531464745035E-4 0.0 4.448616257912976E-5 0.0 12-13 0.0 2.0336531464745035E-4 0.0 5.084132866186259E-5 0.0 14-15 0.0 2.2878597897838164E-4 0.0 5.084132866186259E-5 0.0 16-17 0.0 2.4149631114384727E-4 0.0 5.084132866186259E-5 1.2710332165465647E-5 18-19 0.0 2.7962730764024424E-4 0.0 5.084132866186259E-5 2.5420664330931294E-5 20-21 0.0 3.2411347021937397E-4 0.0 6.355166082732823E-5 2.5420664330931294E-5 22-23 1.2710332165465647E-5 3.5588930063303807E-4 0.0 9.532749124099235E-5 3.1775830413664115E-5 24-25 1.9065498248198472E-5 4.0037546321216786E-4 0.0 1.5252398598558778E-4 3.813099649639694E-5 26-27 3.1775830413664115E-5 4.1944096146036633E-4 0.0 2.2243081289564882E-4 3.813099649639694E-5 28-29 3.813099649639694E-5 4.257961275430991E-4 0.0 6.228062761078167E-4 3.813099649639694E-5 30-31 3.813099649639694E-5 4.702822901222289E-4 0.0 0.0019891669838953737 3.813099649639694E-5 32-33 3.813099649639694E-5 4.702822901222289E-4 0.0 0.005090488032268991 3.813099649639694E-5 34-35 4.448616257912976E-5 5.846752796114197E-4 0.0 0.008255360741469937 3.813099649639694E-5 36-37 6.355166082732823E-5 6.927131030178776E-4 0.0 0.013676317410041036 3.813099649639694E-5 38-39 8.26171590755267E-5 7.117786012660761E-4 0.0 0.02726366249492381 3.813099649639694E-5 40-41 8.897232515825952E-5 7.562647638452059E-4 0.0 0.04247157493090346 3.813099649639694E-5 42-43 8.897232515825952E-5 7.8804059425887E-4 0.0 0.05118450763033015 3.813099649639694E-5 44-45 1.0168265732372517E-4 8.770129194171296E-4 0.0 0.06156884900951559 3.813099649639694E-5 46-47 1.1439298948919082E-4 9.405645802444578E-4 0.0 0.07325599943566125 3.813099649639694E-5 48-49 1.2710332165465646E-4 9.532749124099235E-4 0.0 0.08575025595431399 3.813099649639694E-5 50-51 1.3981365382012212E-4 0.001074023067981847 0.0 0.09711329291024028 3.813099649639694E-5 52-53 1.3981365382012212E-4 0.00108037823406458 0.0 0.12312498768686572 4.448616257912976E-5 54-55 1.4616881990285493E-4 0.001112154064478244 0.0 0.15358529872140414 5.084132866186259E-5 56-57 1.5252398598558775E-4 0.0011566402270573738 0.0 0.19551032936919258 5.719649474459541E-5 58-59 1.5252398598558775E-4 0.0012138367218019691 0.0 0.2299235537071908 6.990682691006105E-5 60-61 1.652343181510534E-4 0.0012837435487120302 0.0 0.24767353257626357 7.626199299279387E-5 62-63 1.652343181510534E-4 0.0013218745452084272 0.0 0.2614451774775456 7.626199299279387E-5 64-65 1.652343181510534E-4 0.0014235572025321523 0.0 0.26629416919867077 7.626199299279387E-5 66-67 1.7158948423378622E-4 0.0014235572025321523 0.0 0.2709525059373139 7.626199299279387E-5 68-69 1.7794465031651904E-4 0.0014553330329458165 0.0 0.2754646738560542 7.626199299279387E-5 70-71 1.8429981639925188E-4 0.001474398531194015 0.0 0.27979889712447803 7.626199299279387E-5 72-73 2.0336531464745035E-4 0.001474398531194015 0.0 0.28315442481616093 1.0168265732372517E-4 74-75 2.0336531464745035E-4 0.0014998191955249464 0.0 0.28565200508667493 1.0168265732372517E-4 76-77 2.0336531464745035E-4 0.00157608118851774 0.0 0.2878191167208868 1.0168265732372517E-4 78-79 2.1607564681291598E-4 0.0016142121850141371 0.0 0.28941426340765275 1.0168265732372517E-4 80-81 2.1607564681291598E-4 0.00162056735109687 0.0 0.2899099663621059 1.2710332165465646E-4 82-83 2.1607564681291598E-4 0.0016332776832623354 0.0 0.29030398665923535 1.3981365382012212E-4 84-85 2.1607564681291598E-4 0.001652343181510534 0.0 0.29049464164171734 1.3981365382012212E-4 86-87 2.1607564681291598E-4 0.0017667361709997249 0.0 0.29052006230604827 1.3981365382012212E-4 88 2.1607564681291598E-4 0.0018938394926543813 0.0 0.29052006230604827 1.5252398598558775E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7245 0.0 44.144207 1 GTATCAA 12710 0.0 36.9038 1 TCAACGC 13315 0.0 34.145596 4 ATCAACG 13790 0.0 33.064365 3 CAACGCA 13915 0.0 32.54785 5 AACGCAG 14490 0.0 31.40563 6 TATCAAC 15305 0.0 30.0765 2 ACGCAGA 16995 0.0 26.699371 7 CGCAGAG 17365 0.0 26.15544 8 GTACATG 19145 0.0 24.021128 1 TACATGG 19495 0.0 22.76176 2 ACATGGG 19445 0.0 22.41639 3 GCAGAGT 22105 0.0 20.5469 9 CATGGGG 14510 0.0 20.177309 4 GAGTACT 12220 0.0 18.708809 12-13 CAGAGTA 21455 0.0 17.95636 10-11 AGAGTAC 19000 0.0 17.48648 10-11 GTGGTAT 3940 0.0 16.279058 1 ATGGGGG 8490 0.0 16.240057 5 GTACTTT 14775 0.0 15.444117 14-15 >>END_MODULE