##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139750_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7218187 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.270540372533986 33.0 33.0 34.0 31.0 34.0 2 31.36625194110377 33.0 32.0 33.0 27.0 34.0 3 32.50659383027899 33.0 33.0 33.0 31.0 34.0 4 32.94085827923272 33.0 33.0 34.0 32.0 34.0 5 33.17390156281626 34.0 33.0 34.0 33.0 34.0 6 37.08411973810044 38.0 37.0 38.0 36.0 38.0 7 37.15313540643932 38.0 38.0 38.0 36.0 38.0 8 37.34793764694653 38.0 38.0 38.0 37.0 38.0 9 37.33613302066017 38.0 38.0 38.0 37.0 38.0 10-11 37.39162236999402 38.0 38.0 38.0 37.0 38.0 12-13 37.401404327707226 38.0 38.0 38.0 37.0 38.0 14-15 37.40625755470175 38.0 38.0 38.0 37.0 38.0 16-17 37.3629949598147 38.0 38.0 38.0 37.0 38.0 18-19 37.343206472761096 38.0 38.0 38.0 37.0 38.0 20-21 37.40286157745547 38.0 38.0 38.0 37.0 38.0 22-23 37.41791891651384 38.0 38.0 38.0 37.0 38.0 24-25 37.421210033297214 38.0 38.0 38.0 37.0 38.0 26-27 37.326734383804975 38.0 38.0 38.0 37.0 38.0 28-29 37.230586252236264 38.0 38.0 38.0 37.0 38.0 30-31 37.31250845868718 38.0 38.0 38.0 37.0 38.0 32-33 37.33501534631864 38.0 38.0 38.0 37.0 38.0 34-35 37.28861433204125 38.0 38.0 38.0 37.0 38.0 36-37 37.29690517680805 38.0 38.0 38.0 37.0 38.0 38-39 37.284832575884586 38.0 38.0 38.0 37.0 38.0 40-41 37.26213109918547 38.0 38.0 38.0 37.0 38.0 42-43 37.26864177024914 38.0 38.0 38.0 37.0 38.0 44-45 37.211739139276105 38.0 38.0 38.0 37.0 38.0 46-47 37.1959029492117 38.0 38.0 38.0 37.0 38.0 48-49 37.179514798664336 38.0 38.0 38.0 37.0 38.0 50-51 37.179021625403536 38.0 38.0 38.0 37.0 38.0 52-53 37.1660875010743 38.0 38.0 38.0 36.5 38.0 54-55 37.116408716094845 38.0 38.0 38.0 36.0 38.0 56-57 37.12051671880539 38.0 38.0 38.0 36.0 38.0 58-59 37.13500416125341 38.0 38.0 38.0 36.0 38.0 60-61 37.14457715208429 38.0 38.0 38.0 36.0 38.0 62-63 37.07383580629179 38.0 38.0 38.0 36.0 38.0 64-65 37.106377135377116 38.0 38.0 38.0 36.0 38.0 66-67 37.125791396251614 38.0 38.0 38.0 36.0 38.0 68-69 37.09631013181321 38.0 38.0 38.0 36.0 38.0 70-71 37.05019278212137 38.0 38.0 38.0 36.0 38.0 72-73 37.064723120734115 38.0 38.0 38.0 36.0 38.0 74-75 37.08765496360532 38.0 38.0 38.0 36.0 38.0 76-77 37.02902850082137 38.0 38.0 38.0 36.0 38.0 78-79 37.05662893548166 38.0 38.0 38.0 36.0 38.0 80-81 37.03553502366529 38.0 38.0 38.0 36.0 38.0 82-83 36.982957909208736 38.0 38.0 38.0 36.0 38.0 84-85 37.0187157247058 38.0 38.0 38.0 36.0 38.0 86-87 37.04512311897374 38.0 38.0 38.0 36.0 38.0 88-89 36.957252429739896 38.0 38.0 38.0 36.0 38.0 90-91 36.919072111507404 38.0 38.0 38.0 36.0 38.0 92-93 36.97637610138097 38.0 38.0 38.0 36.0 38.0 94-95 36.96000111057302 38.0 38.0 38.0 36.0 38.0 96-97 36.90928832739819 38.0 38.0 38.0 35.0 38.0 98-99 36.91976911836823 38.0 38.0 38.0 35.5 38.0 100 35.430204132154685 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 6.0 19 16.0 20 52.0 21 159.0 22 518.0 23 1313.0 24 3121.0 25 6197.0 26 11018.0 27 17636.0 28 26792.0 29 38790.0 30 53690.0 31 70967.0 32 93581.0 33 124924.0 34 184935.0 35 327466.0 36 910007.0 37 5346996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80849013748189 20.22697666325353 13.15629534119856 24.808237858066022 2 14.972349674343072 20.88856483054798 41.10366340319352 23.035422091915425 3 18.269975549261886 25.800024299730666 30.28272889023241 25.64727126077504 4 12.305137860236236 17.714950306032822 38.98316473127575 30.996747102455192 5 13.115696646782013 37.58118981507522 36.21552731920728 13.087586218935485 6 30.253331050197946 38.060836691537325 18.629498109209237 13.05633414905549 7 26.645591181490186 32.441344987054215 23.01667137468567 17.896392456769924 8 24.445168849186093 36.94199111217263 21.323955724616166 17.288884314025115 9 25.278134246175664 16.670127831268434 21.169526364445808 36.882211558110086 10-11 23.97419185731819 26.870556276804685 29.290021164594375 19.865230701282748 12-13 24.627423756131563 24.201444213069014 29.403539974788686 21.76759205601074 14-15 21.70245104483993 25.845645173781172 26.565043271946266 25.88686050943263 16-17 21.67635030790973 29.152902245397634 27.334862618549504 21.835884828143133 18-19 21.67975143896937 28.339179907641626 28.82247301157479 21.158595641814212 20-21 22.22927625235242 27.545103307021684 28.792530606409223 21.433089834216666 22-23 21.935639040410003 27.629263072609877 28.66340506040802 21.771692826572103 24-25 21.866607570616857 27.625057177714258 28.777035282433832 21.731299969235046 26-27 21.9328790022572 27.796116475931814 28.66973930982681 21.60126521198418 28-29 21.7147505307245 27.716320563282444 28.70237252598253 21.866556380010525 30-31 22.083732456275406 27.6837290163974 28.704797159548477 21.52774136777872 32-33 21.91051885147871 27.6805728993759 28.80143127610544 21.607476973039947 34-35 21.783444463627834 27.735106908672464 28.89382089953778 21.58762772816192 36-37 21.91160460386639 27.718617835005738 28.711577969328683 21.65819959179919 38-39 21.658571009714016 27.751331194039714 28.926676331595324 21.66342146465094 40-41 21.90579364851385 27.627135613010278 28.862232860038738 21.60483787843713 42-43 21.874089295035066 27.61264171815645 28.790868089718348 21.722400897090136 44-45 21.800030321848727 27.790031219563094 28.696381557179752 21.71355690140843 46-47 21.983796150320178 27.66854950835482 28.436279028930155 21.911375312394853 48-49 21.832660393728826 27.73824755580045 28.50501534621644 21.924076704254283 50-51 21.754747385392566 27.897510946659505 28.5471364105718 21.800605257376134 52-53 21.88014589675549 27.86500277160815 28.5796547393046 21.67519659233176 54-55 21.87245094011337 27.828267065018014 28.426758028867717 21.8725239660009 56-57 21.93856973191558 28.006936551636446 28.261169596808166 21.793324119639806 58-59 21.71503050134503 28.10525102049603 28.422384796452256 21.757333681706683 60-61 21.989931014176616 28.223441020808902 28.283809910865543 21.50281805414894 62-63 21.715457024702335 28.373917863602337 28.244714440992947 21.665910670702388 64-65 21.69600921288659 28.31686472904099 28.248463482291886 21.738662575780534 66-67 21.694306271565154 28.32467332612169 28.326483780591023 21.654536621722134 68-69 21.756383998701565 28.349288422718864 28.195730217175935 21.698597361403632 70-71 21.795732118549235 28.119770081470946 28.137001875976704 21.947495924003118 72-73 21.84957421933781 28.005980607398207 28.124990836166084 22.0194543370979 74-75 21.769688471379638 28.076808554332818 28.253173343333675 21.900329630953863 76-77 21.92539048776881 27.849108240532296 28.18213968680982 22.043361584889077 78-79 21.84433346663461 27.860527133938216 28.057129476843084 22.238009922584094 80-81 22.030588519312243 28.048417640738254 27.9945384711281 21.926455368821397 82-83 22.07925704102787 27.87063357399701 28.057686303219658 21.99242308175546 84-85 21.97369635148448 27.880573544180027 28.03349856386283 22.112231540472663 86-87 21.883206151886682 28.016675316096805 28.08785261016084 22.012265921855672 88-89 22.06688647695671 28.000448629997365 28.035005484428627 21.8976594086173 90-91 22.10900483236556 28.031858738285088 28.01591006716108 21.84322636218827 92-93 21.985777455472075 27.84727860581404 28.07831896782148 22.088624970892408 94-95 22.08734353462322 28.078159602131937 28.04923213166497 21.785264731579876 96-97 22.275498679058167 28.029817943845863 28.10793391528234 21.58674946181363 98-99 23.07266271828793 29.99980776770795 28.48932439779607 18.43820511620805 100 21.969449515943992 30.98113172947877 22.504831773298047 24.544586981279195 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 829.0 1 724.5 2 997.5 3 1607.5 4 2056.5 5 2702.5 6 3462.0 7 4428.5 8 5688.0 9 6557.0 10 6728.5 11 7003.0 12 7857.0 13 9365.5 14 12080.5 15 14896.0 16 16861.5 17 18033.5 18 18092.5 19 17528.5 20 17109.0 21 17483.0 22 19741.0 23 24270.5 24 31093.5 25 40851.0 26 53166.5 27 67252.5 28 83354.0 29 101189.0 30 119131.5 31 138053.5 32 157362.0 33 174366.0 34 190587.5 35 206326.5 36 221656.0 37 236097.0 38 248845.5 39 259534.5 40 270913.5 41 281843.5 42 288482.5 43 293943.5 44 298700.0 45 302829.0 46 312592.0 47 314828.0 48 306720.5 49 296895.0 50 282433.5 51 267344.5 52 251996.0 53 236209.5 54 219781.0 55 202083.5 56 183994.0 57 165545.5 58 145877.0 59 125208.5 60 103899.5 61 84130.0 62 66553.0 63 51025.5 64 37749.0 65 27362.5 66 20124.0 67 15316.5 68 11687.0 69 8662.5 70 6367.0 71 4580.5 72 3226.0 73 2220.0 74 1501.0 75 995.0 76 655.0 77 384.5 78 235.5 79 157.0 80 98.5 81 59.5 82 40.5 83 27.5 84 17.0 85 10.5 86 7.0 87 5.0 88 2.5 89 2.0 90 3.5 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.1083115469299977E-4 3 0.0 4 9.697726035637481E-5 5 0.003117126225740619 6 5.957174564748738E-4 7 8.312336601974984E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 8.246483654325977E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.4143438367456853E-5 44-45 1.4215585754987981E-5 46-47 2.1449547553968672E-5 48-49 7.911712196652367E-5 50-51 3.977563360595553E-4 52-53 2.3980820575718458E-4 54-55 2.921026968819644E-4 56-57 3.597174324133156E-4 58-59 2.948975643820363E-4 60-61 6.664863204053008E-5 62-63 2.83078653180303E-4 64-65 2.248068515732995E-5 66-67 6.034844589173428E-5 68-69 4.787035795250121E-4 70-71 5.358618254255566E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.001023294736171877 90-91 0.0 92-93 1.647405069312509E-5 94-95 4.9789081005590074E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 69.0 20-21 156.0 22-23 266.0 24-25 385.0 26-27 1327.0 28-29 4189.0 30-31 9675.0 32-33 13039.0 34-35 18773.0 36-37 29108.0 38-39 31775.0 40-41 31036.0 42-43 34236.0 44-45 40345.0 46-47 42158.0 48-49 38950.0 50-51 34272.0 52-53 32747.0 54-55 35662.0 56-57 37158.0 58-59 21077.0 60-61 40345.0 62-63 39016.0 64-65 42436.0 66-67 47199.0 68-69 48376.0 70-71 54567.0 72-73 40537.0 74-75 38933.0 76-77 40868.0 78-79 42139.0 80-81 41770.0 82-83 38912.0 84-85 38748.0 86-87 40668.0 88-89 43024.0 90-91 43401.0 92-93 43157.0 94-95 55229.0 96-97 235467.0 98-99 511854.0 100-101 5235138.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.58355167524388 #Duplication Level Percentage of deduplicated Percentage of total 1 90.90583797379695 79.61856157759394 2 6.661420787701296 11.668617835803605 3 1.4638815361228168 3.846358324963444 4 0.4674214919434783 1.6375373757500489 5 0.21364570146828588 0.9355924667370672 6 0.10979251964556784 0.5769611290759692 7 0.056816616969208054 0.3483340775834621 8 0.03362185442030086 0.23557771392303584 9 0.019937697020045556 0.15715928855164643 >10 0.06655803189726507 0.8723973598451615 >50 8.565739828632714E-4 0.05156966480210083 >100 1.8659263547840264E-4 0.037325042123605816 >500 2.2622396384422147E-5 0.014008143246862914 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3853894336624972E-5 2 0.0 4.156168300987492E-5 0.0 0.0 1.3853894336624972E-5 3 0.0 4.156168300987492E-5 0.0 1.3853894336624972E-5 1.3853894336624972E-5 4 0.0 5.541557734649989E-5 0.0 2.7707788673249945E-5 1.3853894336624972E-5 5 0.0 6.926947168312487E-5 0.0 2.7707788673249945E-5 1.3853894336624972E-5 6 1.3853894336624972E-5 6.926947168312487E-5 0.0 2.7707788673249945E-5 1.3853894336624972E-5 7 1.3853894336624972E-5 6.926947168312487E-5 0.0 2.7707788673249945E-5 1.3853894336624972E-5 8 1.3853894336624972E-5 9.697726035637481E-5 0.0 5.541557734649989E-5 1.3853894336624972E-5 9 1.3853894336624972E-5 1.8010062637612465E-4 0.0 6.926947168312487E-5 2.7707788673249945E-5 10-11 1.3853894336624972E-5 1.8010062637612465E-4 0.0 1.1083115469299978E-4 2.7707788673249945E-5 12-13 1.3853894336624972E-5 1.8010062637612465E-4 0.0 1.1775810186131228E-4 2.7707788673249945E-5 14-15 1.3853894336624972E-5 2.56297045227562E-4 0.0 1.3853894336624974E-4 2.7707788673249945E-5 16-17 2.7707788673249945E-5 2.632239923958745E-4 0.0 1.6624673203949968E-4 2.7707788673249945E-5 18-19 2.7707788673249945E-5 2.8400483390081193E-4 0.0 1.8010062637612465E-4 2.7707788673249945E-5 20-21 2.7707788673249945E-5 3.047856754057494E-4 0.0 2.008814678810621E-4 2.7707788673249945E-5 22-23 2.7707788673249945E-5 3.255665169106869E-4 0.0 2.4244315089093702E-4 3.4634735841562434E-5 24-25 2.7707788673249945E-5 3.809820942571868E-4 0.0 2.4937009805924953E-4 4.156168300987492E-5 26-27 2.7707788673249945E-5 3.8790904142549924E-4 0.0 3.255665169106869E-4 5.541557734649989E-5 28-29 2.7707788673249945E-5 3.948359885938117E-4 0.0 6.719138753263111E-4 5.541557734649989E-5 30-31 2.7707788673249945E-5 4.8488630178187403E-4 0.0 0.0016070517430484968 5.541557734649989E-5 32-33 2.7707788673249945E-5 4.8488630178187403E-4 0.0 0.0032418112747702437 6.926947168312487E-5 34-35 2.7707788673249945E-5 5.680096678016239E-4 0.0 0.005382237949778802 8.312336601974984E-5 36-37 2.7707788673249945E-5 6.442060866530613E-4 0.0 0.008797222903756858 8.312336601974984E-5 38-39 2.7707788673249945E-5 6.580599809896862E-4 0.0 0.019533991014641212 8.312336601974984E-5 40-41 2.7707788673249945E-5 7.41183347009436E-4 0.0 0.030270759125525563 8.312336601974984E-5 42-43 2.7707788673249945E-5 7.619641885143736E-4 0.0 0.03594392885637349 9.005031318806232E-5 44-45 2.7707788673249945E-5 8.589414488707483E-4 0.0 0.04385450252258635 9.697726035637481E-5 46-47 2.7707788673249945E-5 9.55918709227123E-4 0.0 0.05156419472091815 9.697726035637481E-5 48-49 2.7707788673249945E-5 9.697726035637481E-4 0.0 0.05911456713437875 9.697726035637481E-5 50-51 2.7707788673249945E-5 0.0011152384940983102 0.0 0.0672952917401558 9.697726035637481E-5 52-53 4.156168300987492E-5 0.0011360193356032477 0.0 0.09105472052746763 9.697726035637481E-5 54-55 4.8488630178187405E-5 0.0011429462827715602 0.0 0.11791742164618345 9.697726035637481E-5 56-57 5.541557734649989E-5 0.0011498732299398727 0.0 0.1496220588355497 9.697726035637481E-5 58-59 5.541557734649989E-5 0.0011498732299398727 0.0 0.293293870053519 1.039042075246873E-4 60-61 6.926947168312487E-5 0.001212215754454685 0.0 0.4202440308071819 1.1083115469299978E-4 62-63 6.926947168312487E-5 0.0012468504902962475 0.0 0.42507903993066404 1.1083115469299978E-4 64-65 6.926947168312487E-5 0.0013022660676427474 0.0 0.4293391124391762 1.1083115469299978E-4 66-67 6.926947168312487E-5 0.0013091930148110599 0.0 0.43332903400812417 1.1083115469299978E-4 68-69 6.926947168312487E-5 0.0013299738563159972 0.0 0.43728432084123064 1.1083115469299978E-4 70-71 6.926947168312487E-5 0.0013438277506526222 0.0 0.44067159800653544 1.1083115469299978E-4 72-73 8.312336601974984E-5 0.0013438277506526222 0.0 0.44332461877199913 1.2468504902962476E-4 74-75 8.312336601974984E-5 0.0013576816449892472 0.0 0.4454581184998394 1.2468504902962476E-4 76-77 8.312336601974984E-5 0.0014269511166723724 0.0 0.4477163032767092 1.2468504902962476E-4 78-79 8.312336601974984E-5 0.0014546589053456222 0.0 0.4492610124952429 1.2468504902962476E-4 80-81 8.312336601974984E-5 0.0014615858525139345 0.0 0.44982902216304455 1.2468504902962476E-4 82-83 8.312336601974984E-5 0.0014754397468505595 0.0 0.45024463899314326 1.2468504902962476E-4 84-85 8.312336601974984E-5 0.001496220588355497 0.0 0.4503693240421729 1.2468504902962476E-4 86-87 8.312336601974984E-5 0.001523928377028747 0.0 0.4504455204610244 1.2468504902962476E-4 88 8.312336601974984E-5 0.001565490060038622 0.0 0.4504455204610244 1.2468504902962476E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6920 0.0 47.63938 1 GTATCAA 11905 0.0 33.7095 1 TCAACGC 12810 0.0 30.298595 4 ATCAACG 13000 0.0 29.855772 3 CAACGCA 13310 0.0 29.160406 5 AACGCAG 13790 0.0 28.20856 6 TATCAAC 14675 0.0 26.92728 2 ACGCAGA 16560 0.0 23.437016 7 CGCAGAG 16875 0.0 23.051619 8 GTACATG 17035 0.0 22.500143 1 TACATGG 16800 0.0 21.925304 2 ACATGGG 16780 0.0 21.375147 3 CTTATAC 8175 0.0 20.162968 1 CATGGGG 12150 0.0 18.45036 4 GCAGAGT 21085 0.0 18.448946 9 GAGTACT 12475 0.0 18.11025 12-13 CAGAGTA 20430 0.0 17.405323 10-11 TATACAC 11595 0.0 17.24851 3 TATGCCG 5240 0.0 17.207565 42-43 AGAGTAC 18335 0.0 16.912897 10-11 >>END_MODULE