##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139747_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1159265 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.65388241687621 18.0 18.0 18.0 18.0 32.0 2 30.33571789021492 32.0 28.0 32.0 27.0 33.0 3 31.224932176853436 32.0 31.0 33.0 27.0 33.0 4 31.70485436893204 33.0 32.0 33.0 30.0 33.0 5 32.41431683006043 33.0 33.0 33.0 32.0 34.0 6 36.173326202378234 38.0 36.0 38.0 33.0 38.0 7 36.69062121257866 38.0 37.0 38.0 34.0 38.0 8 36.61819687474391 38.0 37.0 38.0 34.0 38.0 9 37.10528653931586 38.0 38.0 38.0 36.0 38.0 10-11 37.21699913307138 38.0 38.0 38.0 36.0 38.0 12-13 37.29131777462444 38.0 38.0 38.0 37.0 38.0 14-15 37.2927216814102 38.0 38.0 38.0 36.5 38.0 16-17 37.24781564180752 38.0 38.0 38.0 36.5 38.0 18-19 37.27767680383691 38.0 38.0 38.0 37.0 38.0 20-21 37.3583606874751 38.0 38.0 38.0 37.0 38.0 22-23 37.392277324510715 38.0 38.0 38.0 37.0 38.0 24-25 37.399771225077586 38.0 38.0 38.0 37.0 38.0 26-27 37.31487581512914 38.0 38.0 38.0 37.0 38.0 28-29 37.228285009792046 38.0 38.0 38.0 37.0 38.0 30-31 37.30997578185112 38.0 38.0 38.0 37.0 38.0 32-33 37.32918911448431 38.0 38.0 38.0 37.0 38.0 34-35 37.2864234984837 38.0 38.0 38.0 37.0 38.0 36-37 37.29357323224986 38.0 38.0 38.0 37.0 38.0 38-39 37.287643588330766 38.0 38.0 38.0 37.0 38.0 40-41 37.25528277972428 38.0 38.0 38.0 37.0 38.0 42-43 37.26203123223061 38.0 38.0 38.0 37.0 38.0 44-45 37.20389166944407 38.0 38.0 38.0 37.0 38.0 46-47 37.1849721802221 38.0 38.0 38.0 37.0 38.0 48-49 37.171304312304095 38.0 38.0 38.0 37.0 38.0 50-51 37.1619675503095 38.0 38.0 38.0 36.0 38.0 52-53 37.140962696350456 38.0 38.0 38.0 36.0 38.0 54-55 37.08621638772787 38.0 38.0 38.0 36.0 38.0 56-57 37.08534029035273 38.0 38.0 38.0 36.0 38.0 58-59 37.09911116318576 38.0 38.0 38.0 36.0 38.0 60-61 37.10047579248831 38.0 38.0 38.0 36.0 38.0 62-63 37.02721427545706 38.0 38.0 38.0 36.0 38.0 64-65 37.054928204219394 38.0 38.0 38.0 36.0 38.0 66-67 37.0749136144089 38.0 38.0 38.0 36.0 38.0 68-69 37.0422881255888 38.0 38.0 38.0 36.0 38.0 70-71 36.9913118564282 38.0 38.0 38.0 36.0 38.0 72-73 36.99248830016603 38.0 38.0 38.0 36.0 38.0 74-75 37.016712938246776 38.0 38.0 38.0 36.0 38.0 76-77 36.95078758972513 38.0 38.0 38.0 36.0 38.0 78-79 36.977193809697795 38.0 38.0 38.0 36.0 38.0 80-81 36.95231944041764 38.0 38.0 38.0 36.0 38.0 82-83 36.894538206770164 38.0 38.0 38.0 36.0 38.0 84-85 36.92729998942974 38.0 38.0 38.0 36.0 38.0 86-87 36.95173170539398 38.0 38.0 38.0 36.0 38.0 88-89 36.86000861372271 38.0 38.0 38.0 35.5 38.0 90-91 36.816991035324975 38.0 38.0 38.0 35.0 38.0 92-93 36.87518913973878 38.0 38.0 38.0 35.0 38.0 94-95 36.85741624746057 38.0 38.0 38.0 35.0 38.0 96-97 36.79894791545155 38.0 38.0 38.0 35.0 38.0 98-99 36.81279930531296 38.0 38.0 38.0 35.0 38.0 100 35.217595003297845 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 7.0 20 11.0 21 37.0 22 112.0 23 277.0 24 579.0 25 1124.0 26 2024.0 27 3136.0 28 4797.0 29 6820.0 30 9468.0 31 12752.0 32 17232.0 33 23621.0 34 36164.0 35 69244.0 36 225294.0 37 746559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.343752291322524 16.645374439839035 18.141581088016974 24.86929218082147 2 14.828619858272269 20.973979202339414 40.54543180377222 23.651969135616103 3 18.42891832324792 24.8766244128823 30.673055772407515 26.021401491462264 4 12.32859814502995 17.242146741380736 38.520388798410025 31.908866315179285 5 13.305481127729651 37.1478432800156 35.88095036809425 13.665725224160507 6 30.786476533716794 37.57132789135129 18.317649464011062 13.324546110920856 7 27.070255722375812 32.16701962019038 22.694120843810516 18.068603813623287 8 24.733689018472912 36.61078355682264 21.0601544944426 17.595372930261846 9 25.363139575506892 16.44835305128681 21.049113015574523 37.13939435763178 10-11 24.342967311184243 26.550702384700653 28.96162654785575 20.144703756259354 12-13 24.8728289045214 23.93072334625819 29.156189482128763 22.040258267091648 14-15 21.92415021586954 25.576809443914893 26.376971615635767 26.1220687245798 16-17 21.934587863862014 28.758782504431686 27.116060607367597 22.190569024338696 18-19 21.95710212936645 27.93593354409906 28.697924978326782 21.4090393482077 20-21 22.474500446846026 27.172853500063837 28.67099537971561 21.681650673374534 22-23 22.25374323396954 27.187958158768417 28.50447919951104 22.053819407751003 24-25 22.11881895388523 27.256217712240794 28.604452734343994 22.02051059952998 26-27 22.06272969921617 27.460583086027167 28.546659436223916 21.930027778532747 28-29 22.006816652589393 27.37429396026626 28.579055517694858 22.03983386944949 30-31 22.271104089714093 27.291249315096906 28.540279215762194 21.897367379426807 32-33 22.053947587239115 27.42159566506832 28.56219164888162 21.962265098810942 34-35 22.20854429390036 27.345006967345565 28.546439703792252 21.900009034961826 36-37 22.015695578893908 27.37642469424948 28.57852785121007 22.029351875646547 38-39 21.86818847985426 27.366022627806792 28.761803707004113 22.003985185334834 40-41 22.137645984311867 27.25501947194646 28.634044614088356 21.97328992965331 42-43 22.05703882143937 27.290711651419823 28.522929050411445 22.12932047672936 44-45 22.083430412779563 27.386190342155103 28.440708812389538 22.0896704326758 46-47 22.244353322308058 27.29512244851725 28.24109104913799 22.219433180036702 48-49 22.05100414554451 27.443824785005617 28.250662532554987 22.25450853689489 50-51 21.946398921168832 27.614829960909443 28.287669242100804 22.15110187582092 52-53 22.1537298183166 27.507267661545313 28.21787312251108 22.12112939762701 54-55 22.113977921037545 27.39887584884381 28.183137920156298 22.304008309962345 56-57 22.157317816779244 27.5491470464504 28.113103200525625 22.180431936244734 58-59 22.02642814627148 27.66289376087421 28.20908435334697 22.10159373950734 60-61 22.14630238625143 27.692446192959626 28.077485411789286 22.083766008999653 62-63 22.02675834886528 27.794826745132944 28.078920414902115 22.099494491099662 64-65 21.966034771402594 27.80471562751623 28.1336091193775 22.095640481703676 66-67 22.085888962801196 27.83404304007759 27.94162589794785 22.138442099173368 68-69 21.98271330256627 27.862934032384523 27.93928428025998 22.215068384789227 70-71 22.065287547173632 27.585393448971484 28.005457081170288 22.3438619226846 72-73 22.171505518108255 27.524288124355195 28.021903472145777 22.282302885390774 74-75 22.042294479383962 27.639682675083172 27.976239405054553 22.341783440478313 76-77 22.177926139196916 27.550475343094483 27.900631963252877 22.370966554455723 78-79 22.21614199654676 27.559640153833815 27.79293436733522 22.431283482284204 80-81 22.18714772492655 27.647227973621753 27.796073778437417 22.369550523014283 82-83 22.2291776524722 27.609391664051643 27.763489490830157 22.397941192646005 84-85 22.283279465702822 27.524616254407725 27.876852823175824 22.31525145671363 86-87 22.236334030914033 27.575770415791478 27.883325913628028 22.30456963966646 88-89 22.25766689620724 27.63052941549477 27.835725338943174 22.27607834935482 90-91 22.301952312306973 27.71022468099371 27.727548071001152 22.260274935698163 92-93 22.306447007213904 27.639571011050094 27.833428327969266 22.220553653766736 94-95 22.255617122608697 27.739578844535167 27.78100284042038 22.22380119243575 96-97 22.39178237729431 27.81440071843978 27.834981024606915 21.958835879659 98-99 23.38862130751401 29.667918096073866 28.13490653478818 18.80855406162394 100 22.164053758875475 30.556200882807683 22.118124260655243 25.1616210976616 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 137.0 1 154.5 2 234.5 3 331.0 4 413.0 5 527.5 6 652.0 7 858.0 8 1111.5 9 1218.0 10 1217.5 11 1257.5 12 1367.5 13 1611.0 14 2107.0 15 2616.5 16 2928.5 17 3087.5 18 3091.5 19 2934.0 20 2816.0 21 2936.0 22 3331.5 23 4120.0 24 5354.5 25 6898.5 26 8838.5 27 11097.0 28 13544.5 29 16367.5 30 19143.5 31 21783.0 32 24572.5 33 27388.5 34 29975.0 35 32227.5 36 34769.5 37 37430.5 38 39591.0 39 41378.5 40 43301.0 41 45001.5 42 46197.0 43 48359.5 44 49990.0 45 50595.5 46 50860.5 47 50341.0 48 50194.5 49 49475.5 50 48189.5 51 46758.5 52 44869.5 53 42755.5 54 40102.0 55 37009.0 56 33903.0 57 31083.0 58 27897.5 59 24080.5 60 20294.0 61 16708.0 62 13309.5 63 10516.5 64 8159.5 65 5981.0 66 4365.0 67 3370.5 68 2582.0 69 1899.5 70 1399.5 71 1012.0 72 725.0 73 494.5 74 342.5 75 226.0 76 129.5 77 83.5 78 67.0 79 51.0 80 30.5 81 18.0 82 10.0 83 7.0 84 6.0 85 5.5 86 4.0 87 2.5 88 2.0 89 2.0 90 1.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 8.626155365684291E-5 5 0.004399339236498989 6 5.175693219410575E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 9.495057175349968E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 9.146256414383951E-5 50-51 7.381616177180933E-4 52-53 2.3252742428442008E-4 54-55 4.68745678750774E-4 56-57 8.980865556915291E-4 58-59 6.6771020232573E-4 60-61 9.628378297057616E-5 62-63 5.344644544697019E-4 64-65 2.4518613796035537E-4 66-67 4.953145718079823E-4 68-69 7.009153955065315E-4 70-71 2.0248868721015645E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0011680845915736603 90-91 0.0 92-93 0.0 94-95 5.75332945175373E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 18.0 20-21 43.0 22-23 81.0 24-25 85.0 26-27 356.0 28-29 1003.0 30-31 2416.0 32-33 3227.0 34-35 4365.0 36-37 7203.0 38-39 8024.0 40-41 7792.0 42-43 8453.0 44-45 10045.0 46-47 10376.0 48-49 9669.0 50-51 8890.0 52-53 8339.0 54-55 8976.0 56-57 9128.0 58-59 9653.0 60-61 9757.0 62-63 9389.0 64-65 9812.0 66-67 10722.0 68-69 10888.0 70-71 11540.0 72-73 9533.0 74-75 9450.0 76-77 9876.0 78-79 10424.0 80-81 10019.0 82-83 9413.0 84-85 9262.0 86-87 9696.0 88-89 9807.0 90-91 10089.0 92-93 9732.0 94-95 11376.0 96-97 35328.0 98-99 76036.0 100-101 748974.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.90363640100642 #Duplication Level Percentage of deduplicated Percentage of total 1 95.7107373379488 89.87586278654973 2 3.354504360369876 6.3000031552352675 3 0.5458333966256975 1.5376722243679748 4 0.18797154339537261 0.7060484585894028 5 0.07488214202226781 0.351585271869378 6 0.03998584662429317 0.2252889841556421 7 0.020716075105386058 0.1361720349046479 8 0.014525167396656661 0.10911728303035201 9 0.011263988014908726 0.09519564914795547 >10 0.03839344041919074 0.5938734641196948 >50 0.001186702077520366 0.06918068802996721 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 8.626155365684291E-5 0.0 0.0 0.0 0.0 7 8.626155365684291E-5 0.0 0.0 0.0 0.0 8 8.626155365684291E-5 0.0 0.0 0.0 0.0 9 8.626155365684291E-5 0.0 0.0 0.0 0.0 10-11 8.626155365684291E-5 0.0 0.0 0.0 0.0 12-13 8.626155365684291E-5 0.0 0.0 0.0 0.0 14-15 8.626155365684291E-5 1.7252310731368583E-4 0.0 0.0 0.0 16-17 1.7252310731368583E-4 1.7252310731368583E-4 0.0 0.0 0.0 18-19 1.7252310731368583E-4 1.7252310731368583E-4 0.0 4.3130776828421456E-5 0.0 20-21 1.7252310731368583E-4 1.7252310731368583E-4 0.0 8.626155365684291E-5 0.0 22-23 1.7252310731368583E-4 1.7252310731368583E-4 0.0 8.626155365684291E-5 0.0 24-25 1.7252310731368583E-4 2.156538841421073E-4 0.0 2.156538841421073E-4 0.0 26-27 1.7252310731368583E-4 2.5878466097052877E-4 0.0 3.4504621462737165E-4 0.0 28-29 1.7252310731368583E-4 3.0191543779895024E-4 0.0 9.057463133968506E-4 0.0 30-31 1.7252310731368583E-4 4.7443854511263606E-4 0.0 0.002630977386533709 0.0 32-33 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.004787516227954782 0.0 34-35 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.008971201580311663 0.0 36-37 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.015613341211888569 0.0 38-39 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.03208929796034556 0.0 40-41 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.05029048578193942 0.0 42-43 1.7252310731368583E-4 5.175693219410575E-4 0.0 0.059994910568334246 0.0 44-45 1.7252310731368583E-4 7.763539829115863E-4 0.0 0.07245970507174805 0.0 46-47 1.7252310731368583E-4 0.001035138643882115 0.0 0.0878573923994945 0.0 48-49 1.7252310731368583E-4 0.001035138643882115 0.0 0.10364325671869676 0.0 50-51 1.7252310731368583E-4 0.001121400197538958 0.0 0.12007608269032533 0.0 52-53 1.7252310731368583E-4 0.001121400197538958 0.0 0.151561549775073 0.0 54-55 1.7252310731368583E-4 0.001207661751195801 0.0 0.19145751834136285 0.0 56-57 1.7252310731368583E-4 0.0012939233048526438 0.0 0.2590434456314993 0.0 58-59 1.7252310731368583E-4 0.0012939233048526438 0.0 0.31364700909628085 0.0 60-61 1.7252310731368583E-4 0.0012939233048526438 0.0 0.33818842111165265 0.0 62-63 1.7252310731368583E-4 0.0012939233048526438 0.0 0.3546643778601096 0.0 64-65 1.7252310731368583E-4 0.0014664464121663294 0.0 0.36229852535874024 0.0 66-67 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3679917879000919 0.0 68-69 1.7252310731368583E-4 0.0014664464121663294 0.0 0.37325374267315925 0.0 70-71 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3776962126864867 0.0 72-73 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3824837289144415 0.0 74-75 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3867105450436268 0.0 76-77 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3892983916533321 0.0 78-79 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3913686689410963 0.0 80-81 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3920156305935226 0.0 82-83 1.7252310731368583E-4 0.0014664464121663294 0.0 0.3924038075849784 0.0 84-85 1.7252310731368583E-4 0.0014664464121663294 0.0 0.39253319991546365 0.0 86-87 1.7252310731368583E-4 0.0014664464121663294 0.0 0.39266259224594896 0.0 88 1.7252310731368583E-4 0.0015527079658231725 0.0 0.39266259224594896 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1180 0.0 36.9543 1 GTATCAA 2135 0.0 33.511864 1 TCAACGC 2240 0.0 32.885994 4 ATCAACG 2260 0.0 32.407642 3 CAACGCA 2305 0.0 31.958622 5 AACGCAG 2395 0.0 30.75502 6 TGGACCG 140 1.5643309E-9 30.239996 5 TATCAAC 2525 0.0 28.838774 2 ACGCAGA 2870 0.0 25.516304 7 CGCAGAG 2930 0.0 25.138258 8 CTTACGC 85 0.0012545182 24.903524 3 ACCGACC 135 3.2731376E-5 21.949158 8 ACACCGT 215 6.2918843E-9 21.658407 6 GCAGAGT 3460 0.0 21.042913 9 GGACCGT 165 6.5958575E-6 20.52477 6 GTACATG 2425 0.0 18.680212 1 GACCGTG 205 2.060884E-6 18.584127 7 TACATGG 2415 0.0 18.582258 2 GAGTACT 2135 0.0 18.240784 12-13 TATACTG 650 0.0 18.237043 5 >>END_MODULE