##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139745_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8461392 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85998001274495 31.0 31.0 34.0 30.0 34.0 2 32.05072841442637 33.0 31.0 34.0 30.0 34.0 3 32.118109408002844 34.0 31.0 34.0 30.0 34.0 4 35.79981308040095 37.0 35.0 37.0 35.0 37.0 5 35.55055291138858 37.0 35.0 37.0 33.0 37.0 6 35.582063211348675 37.0 35.0 37.0 33.0 37.0 7 35.54525744700163 37.0 35.0 37.0 33.0 37.0 8 35.539391981839394 37.0 35.0 37.0 33.0 37.0 9 37.333035628180326 39.0 37.0 39.0 34.0 39.0 10-11 37.185740833186784 39.0 37.0 39.0 33.5 39.0 12-13 37.19545661044897 39.0 37.0 39.0 33.0 39.0 14-15 38.332611820844605 40.0 38.0 41.0 33.5 41.0 16-17 38.2659481442297 40.0 38.0 41.0 33.0 41.0 18-19 38.32172430966442 40.0 38.0 41.0 33.5 41.0 20-21 38.35964680942122 40.0 38.0 41.0 34.0 41.0 22-23 38.34829221686856 40.0 38.0 41.0 34.0 41.0 24-25 38.300445954176865 40.0 38.0 41.0 34.0 41.0 26-27 38.187779691500374 40.0 38.0 41.0 34.0 41.0 28-29 38.018099729582026 40.0 37.0 41.0 33.0 41.0 30-31 37.93032049429584 40.0 37.0 41.0 33.0 41.0 32-33 37.84700977174636 40.0 37.0 41.0 33.0 41.0 34-35 37.780492802275916 40.0 37.0 41.0 33.0 41.0 36-37 37.73787217602835 40.0 37.0 41.0 33.0 41.0 38-39 37.65084836977722 39.5 37.0 41.0 33.0 41.0 40-41 37.62933814691911 39.0 37.0 41.0 33.0 41.0 42-43 37.5716095970439 39.0 37.0 41.0 32.5 41.0 44-45 37.49761283890107 39.0 37.0 41.0 32.0 41.0 46-47 37.43869539825353 39.0 36.0 41.0 32.0 41.0 48-49 37.44548601610313 39.0 36.0 41.0 32.0 41.0 50-51 37.33178291558983 39.0 36.0 40.0 31.5 41.0 52-53 37.13329663999165 39.0 36.0 40.0 31.0 41.0 54-55 36.94372140634975 39.0 35.0 40.0 31.0 41.0 56-57 36.82571696571985 39.0 35.0 40.0 31.0 41.0 58-59 36.63732570196352 38.5 35.0 40.0 30.5 41.0 60-61 36.45216671940937 38.0 35.0 40.0 30.0 41.0 62-63 36.29504570821526 38.0 34.5 40.0 30.0 41.0 64-65 36.042895700267366 37.5 34.0 40.0 30.0 41.0 66-67 35.88457413746255 37.0 34.0 40.0 30.0 41.0 68-69 35.5946473364756 36.5 34.0 39.0 29.5 41.0 70-71 35.25857918679233 36.0 34.0 39.0 29.0 40.5 72-73 34.968643091640374 36.0 34.0 39.0 29.0 40.0 74-75 34.6119283485412 35.0 33.5 38.0 29.0 40.0 76-77 32.464803201164614 33.5 30.5 35.5 25.5 38.5 78-79 33.69232385915175 35.0 32.5 36.0 28.0 39.0 80-81 33.65595361946556 35.0 33.0 36.0 28.0 39.0 82-83 33.47452188501752 35.0 33.0 36.0 29.0 37.0 84-85 33.29937811691215 35.0 33.0 35.5 29.0 37.0 86-87 33.07405739522554 35.0 32.0 35.0 28.0 36.5 88-89 32.91862883752867 34.0 32.0 35.0 28.0 36.0 90-91 32.794196636744076 34.0 32.0 35.0 27.5 36.0 92-93 32.79209259504553 34.0 32.0 35.0 28.5 36.0 94-95 32.75376474301048 34.0 32.0 35.0 29.0 35.0 96-97 32.76118978147416 34.0 32.0 35.0 29.0 35.0 98-99 32.919883058704805 34.0 32.0 35.0 29.0 35.0 100-101 31.664032821486472 33.0 29.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 0.0 19 8.0 20 50.0 21 271.0 22 1250.0 23 4116.0 24 11338.0 25 24874.0 26 46156.0 27 75339.0 28 111002.0 29 152307.0 30 198189.0 31 251596.0 32 321564.0 33 419114.0 34 573195.0 35 815296.0 36 1266406.0 37 1895160.0 38 1754584.0 39 534010.0 40 5565.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.7726066822102 20.235169343294814 13.430154281943206 24.56206969255177 2 15.329016755281554 21.428363761166683 39.70953982186256 23.5330796616892 3 18.661119573099764 25.578192557042783 30.225431632331794 25.535256237525655 4 12.981718963229568 17.506625092730026 37.98899022631149 31.522665717728916 5 13.3527674879027 37.751979816087 35.646841559875725 13.248411136134575 6 31.043544608263034 37.35119469704276 18.286541977962965 13.318718716731242 7 27.147738137587325 32.146089472297106 22.93675152664042 17.769420863475148 8 24.96798665455665 36.43093301691285 21.047224928985624 17.553855399544872 9 25.731463570060342 16.273374404589696 20.97736400819156 37.017798017158405 10-11 24.58875308674877 26.400197225733113 28.853895477097947 20.157154210420167 12-13 25.078165713617466 23.90225413779987 28.985219321667387 22.03436082691528 14-15 22.180199320643656 25.45417027447554 26.185976620984857 26.179653783895944 16-17 22.147994215844992 28.570383488342316 26.97565760903511 22.305964686777582 18-19 22.182876017914623 27.95928501053998 28.321378294529758 21.53646067701564 20-21 22.801102047671325 27.212785237449527 28.200537597490218 21.785575117388927 22-23 22.575411418828764 27.068323468863802 28.05629130618563 22.299973806121802 24-25 22.401689204247795 27.195192876001705 28.088583435200054 22.314534484550446 26-27 22.327404450358543 27.35275523028018 28.04172395948843 22.278116359872847 28-29 22.34413582804395 27.386188495384566 28.028360247829596 22.24131542874189 30-31 22.485314940623905 27.291915389916138 27.936251513534767 22.28651815592519 32-33 22.253638747147836 27.45069111994183 27.944701604062356 22.350968528847982 34-35 22.433612432407717 27.416711152098866 27.938465274677593 22.211211140815827 36-37 22.437140501653378 27.313068065710866 27.892685072797864 22.357106359837896 38-39 22.308215522807508 27.46521230716513 27.96342952209736 22.263142647929993 40-41 22.433679620878927 27.20343184040452 27.96405030794822 22.39883823076833 42-43 22.45652762755182 27.265105463229293 27.845412728801556 22.432954180417333 44-45 22.30931155219753 27.305769478705304 27.72865297346181 22.65626599563535 46-47 22.395019678172442 27.265612876064193 27.58384221768551 22.755525228077854 48-49 22.217809861060136 27.553431500187703 27.64533359164266 22.5834250471095 50-51 22.19008795866941 27.61966262702439 27.624757848630594 22.56549156567561 52-53 22.301581546142053 27.472650101069984 27.2203293276451 23.005439025142866 54-55 22.266014537372783 27.128866283951464 27.462323232637353 23.1427959460384 56-57 22.21133510696488 26.80116799619821 27.870245801662037 23.117251095174872 58-59 22.04293591365247 26.555258091701354 27.994775623179407 23.40703037146676 60-61 22.118403767327337 26.257099468588095 28.356342909798325 23.26815385428624 62-63 21.848454337877524 26.939025261882076 28.323870140785935 22.88865025945446 64-65 21.360243947796583 27.240667880717222 28.03470455781185 23.364383613674338 66-67 21.476223994544025 27.98543274993811 27.407409114106624 23.130934141411238 68-69 21.59920140352382 28.382439345737065 26.817723914810877 23.200635335928236 70-71 21.579808058422095 27.97627299721474 26.778534956603238 23.665383987759924 72-73 21.473924761434354 27.483944903999042 26.670433421280077 24.37169691328653 74-75 22.043691614983093 27.01142676074293 26.800974011137153 24.143907613136825 76-77 22.597306517541014 26.8246675727774 26.6568626387708 23.92116327091078 78-79 22.850988831618864 26.641973414200425 25.797231716013663 24.70980603816705 80-81 22.698862334639635 27.19482392745663 25.73708870967077 24.369225028232965 82-83 22.585795042463943 27.396023862249603 25.843486285574052 24.174694809712406 84-85 22.581634948994132 27.392844521540155 25.80245029568467 24.223070233781044 86-87 23.005374171894754 27.83638399956493 25.706826242758098 23.45141558578222 88-89 23.20940131615292 27.408169460464926 26.182581700320934 23.19984752306122 90-91 22.827936659540306 27.40782611896517 26.51743276403884 23.246804457455692 92-93 22.59332935718546 26.76879126461187 26.4143432350268 24.223536143175874 94-95 22.413997907325683 26.77234174192907 27.275740895288564 23.537919455456684 96-97 21.8714566386428 27.101056219482505 27.576827543674508 23.45065959820019 98-99 22.198799898228348 27.033439769063122 28.05381712976959 22.713943202938935 100-101 26.68479321860064 34.39022409524192 28.81931326733617 10.105669418821268 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1572.0 1 1372.5 2 1742.0 3 2449.5 4 3164.5 5 4865.0 6 6388.0 7 7465.0 8 8250.0 9 8234.5 10 7541.0 11 6802.5 12 7430.0 13 9891.0 14 15171.5 15 22253.5 16 27976.0 17 31520.0 18 33028.0 19 32481.5 20 31115.5 21 30214.5 22 30401.5 23 33386.5 24 39542.5 25 48839.0 26 61681.0 27 76406.5 28 93273.5 29 112081.5 30 130475.0 31 148353.0 32 166520.0 33 184385.5 34 201711.5 35 219031.5 36 238262.0 37 256744.5 38 273626.0 39 289913.0 40 305886.5 41 321781.5 42 333417.5 43 343583.5 44 354005.0 45 362738.5 46 370016.0 47 373855.5 48 375422.0 49 374478.5 50 370391.0 51 363399.0 52 351203.0 53 336159.0 54 319089.5 55 299255.0 56 276980.5 57 251016.0 58 223266.0 59 193416.0 60 161282.0 61 131563.5 62 105568.0 63 82257.5 64 62070.0 65 46594.5 66 35121.0 67 26717.0 68 20480.0 69 15249.0 70 11078.5 71 8026.0 72 5855.0 73 4188.5 74 2972.0 75 2102.5 76 1470.5 77 980.5 78 660.5 79 455.0 80 307.0 81 218.5 82 176.5 83 134.0 84 97.5 85 75.0 86 60.0 87 48.0 88 33.0 89 19.5 90 13.5 91 9.0 92 7.5 93 4.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.09103183022368E-4 3 2.8364127320894717E-4 4 1.1818386383706132E-5 5 0.0 6 0.0 7 2.3636772767412264E-5 8 9.100157515453722E-4 9 0.0 10-11 2.540953072496819E-4 12-13 4.904630349238045E-4 14-15 5.909193191853066E-6 16-17 5.909193191853066E-6 18-19 4.3137110300527385E-4 20-21 0.0 22-23 0.0 24-25 1.773476873033953E-4 26-27 0.0 28-29 5.504400472242048E-4 30-31 3.616522027524223E-4 32-33 0.0012070935476687485 34-35 0.0012238070224673656 36-37 4.803967789155775E-5 38-39 0.0019372787831951962 40-41 5.478175981655658E-4 42-43 2.0268946812625194E-4 44-45 1.8613068309712523E-4 46-47 5.647701642715601E-5 48-49 5.07816244152972E-5 50-51 5.775436772218763E-5 52-53 1.2938198173475748E-5 54-55 3.952047539633368E-4 56-57 6.228997410424097E-4 58-59 4.808961408604584E-4 60-61 6.852249511940371E-4 62-63 1.3211503890589725E-4 64-65 8.693116923760028E-5 66-67 2.5073356509246647E-4 68-69 1.7183844244536E-4 70-71 1.952606338941219E-4 72-73 0.0 74-75 2.1521615521503896E-5 76-77 8.880029563219733E-4 78-79 2.9537963482954198E-5 80-81 2.399768242381992E-4 82-83 2.285013548226163E-5 84-85 3.0938653214127734E-5 86-87 1.5717856923649175E-5 88-89 4.796881259680207E-5 90-91 9.77254085410704E-5 92-93 8.305551954175945E-5 94-95 2.8848005796752225E-4 96-97 6.968578592021344E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 264.0 20-21 827.0 22-23 1565.0 24-25 3222.0 26-27 5462.0 28-29 11124.0 30-31 23366.0 32-33 30639.0 34-35 42717.0 36-37 64027.0 38-39 46721.0 40-41 72375.0 42-43 77917.0 44-45 89798.0 46-47 92290.0 48-49 86893.0 50-51 80324.0 52-53 11311.0 54-55 11848.0 56-57 11640.0 58-59 12436.0 60-61 92697.0 62-63 91204.0 64-65 96581.0 66-67 103803.0 68-69 104638.0 70-71 102257.0 72-73 98687.0 74-75 101848.0 76-77 96192.0 78-79 103479.0 80-81 103727.0 82-83 100103.0 84-85 101004.0 86-87 106709.0 88-89 112657.0 90-91 118718.0 92-93 123981.0 94-95 141620.0 96-97 210171.0 98-99 810304.0 100-101 4764246.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.7143924925509 #Duplication Level Percentage of deduplicated Percentage of total 1 90.0267922141909 77.16591802692486 2 7.04187850749448 12.071806765524808 3 1.6490112507587003 4.240319927164905 4 0.6062133922329197 2.078448505443728 5 0.2720141349740458 1.165776316434354 6 0.13308796927222333 0.6844532660541545 7 0.08187753698349527 0.4912658338928666 8 0.04943303448123575 0.33896980156979556 9 0.03505606278127828 0.27043282120301926 >10 0.1025263984563902 1.3446028129184417 >50 0.0017397416233803243 0.0949769427380452 >100 3.69756750949731E-4 0.05302898013105597 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3636772767412264E-5 0.0 0.0 0.0 3 0.0 2.3636772767412264E-5 0.0 0.0 0.0 4 0.0 7.091031830223679E-5 0.0 0.0 0.0 5 1.1818386383706132E-5 7.091031830223679E-5 0.0 1.1818386383706132E-5 0.0 6 7.091031830223679E-5 7.091031830223679E-5 0.0 1.1818386383706132E-5 0.0 7 7.091031830223679E-5 7.091031830223679E-5 0.0 1.1818386383706132E-5 0.0 8 7.091031830223679E-5 1.1818386383706132E-4 0.0 2.3636772767412264E-5 1.1818386383706132E-5 9 7.091031830223679E-5 2.1273095490671038E-4 0.0 5.909193191853066E-5 1.1818386383706132E-5 10-11 7.681951149408986E-5 2.1273095490671038E-4 0.0 1.1818386383706132E-4 1.1818386383706132E-5 12-13 9.454709106964906E-5 2.2454934129041652E-4 0.0 1.890941821392981E-4 1.1818386383706132E-5 14-15 9.454709106964906E-5 2.954596595926533E-4 0.0 2.3045853448226957E-4 1.1818386383706132E-5 16-17 1.5363902298817973E-4 3.1909643236006555E-4 0.0 4.3137110300527385E-4 1.1818386383706132E-5 18-19 1.5363902298817973E-4 3.309148187437717E-4 0.0 6.20465285144572E-4 1.1818386383706132E-5 20-21 1.5363902298817973E-4 3.604607847030371E-4 0.0 8.922881719698129E-4 1.1818386383706132E-5 22-23 1.6545740937188585E-4 4.018251370460085E-4 0.0 0.0014713891047714134 1.1818386383706132E-5 24-25 1.7136660256373892E-4 4.4318948938897994E-4 0.0 0.0020032164920381896 1.1818386383706132E-5 26-27 1.890941821392981E-4 4.6682626215639224E-4 0.0 0.0031555091644495372 1.1818386383706132E-5 28-29 1.890941821392981E-4 4.727354553482453E-4 0.0 0.008391054332431353 1.1818386383706132E-5 30-31 2.068217617148573E-4 5.31827387266776E-4 0.0 0.023489042937615938 1.1818386383706132E-5 32-33 2.304585344822696E-4 5.31827387266776E-4 0.0 0.051380434803162414 3.5455159151118396E-5 34-35 2.718228868252411E-4 5.968285123771597E-4 0.0 0.08851971401395893 3.5455159151118396E-5 36-37 2.954596595926533E-4 6.618296374875434E-4 0.0 0.14032561072693478 3.5455159151118396E-5 38-39 2.954596595926533E-4 6.736480238712496E-4 0.0 0.23928686911089808 4.727354553482453E-5 40-41 2.954596595926533E-4 7.209215694060741E-4 0.0 0.6703743308429629 4.727354553482453E-5 42-43 3.131872391682125E-4 7.327399557897803E-4 0.0 0.7567312801487036 4.727354553482453E-5 44-45 3.1909643236006555E-4 8.391054332431354E-4 0.0 0.8896940361585896 4.727354553482453E-5 46-47 3.1909643236006555E-4 9.100157515453722E-4 0.0 1.0517122950928168 5.3182738726677594E-5 48-49 3.1909643236006555E-4 9.100157515453722E-4 0.0 1.1781276650461296 5.909193191853066E-5 50-51 3.250056255519186E-4 0.0010459271949579928 0.0 1.2974401847828347 5.909193191853066E-5 52-53 3.309148187437717E-4 0.001063654774533552 0.0 1.603359116325068 6.500112511038372E-5 54-55 3.309148187437717E-4 0.001081382354109111 0.0 2.5354988871807382 7.681951149408986E-5 56-57 3.309148187437717E-4 0.0011227467064520826 0.0 3.5565365604146457 8.272870468594292E-5 58-59 3.309148187437717E-4 0.0011227467064520826 0.0 4.5963654679986465 8.272870468594292E-5 60-61 3.309148187437717E-4 0.001140474286027642 0.0 5.380604042455426 8.272870468594292E-5 62-63 3.4273320512747784E-4 0.0011700202519869072 0.0 5.409671363766151 8.272870468594292E-5 64-65 3.4273320512747784E-4 0.0012291121839054378 0.0 5.424674805280266 8.272870468594292E-5 66-67 3.4273320512747784E-4 0.001240930570289144 0.0 5.434619977422155 8.272870468594292E-5 68-69 3.4273320512747784E-4 0.0012763857294402622 0.0 5.442591479037965 8.272870468594292E-5 70-71 3.4273320512747784E-4 0.0013000225022076746 0.0 5.449895241823095 8.272870468594292E-5 72-73 3.6636997789489013E-4 0.0013000225022076746 0.0 5.455225334082146 8.272870468594292E-5 74-75 3.6636997789489013E-4 0.0013177500817832337 0.0 5.460271785067989 8.272870468594292E-5 76-77 3.6636997789489013E-4 0.0013591144341262053 0.0 5.464928229303169 8.272870468594292E-5 78-79 3.6636997789489013E-4 0.0013709328205099114 0.0 5.46914148404896 8.272870468594292E-5 80-81 3.6636997789489013E-4 0.0013768420137017644 0.0 5.470784239756295 8.863789787779598E-5 82-83 3.722791710867432E-4 0.0013886604000854705 0.0 5.471487433746126 9.454709106964906E-5 84-85 3.781883642785962E-4 0.001418206366044736 0.0 5.47245654142959 9.454709106964906E-5 86-87 3.781883642785962E-4 0.0014891166843469727 0.0 5.472787456248334 1.0636547745335519E-4 88-89 3.781883642785962E-4 0.001524571843498091 0.0 5.4729174584985545 1.0636547745335519E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8595 0.0 41.92883 1 TATCTCG 13220 0.0 39.795143 94-95 CCGTCTT 5215 0.0 35.203773 92-93 TGCCGTC 5405 0.0 32.936165 90-91 TATGCCG 5385 0.0 32.32652 88-89 GCCGTCT 5325 0.0 31.625471 90-91 ATGCCGT 5450 0.0 30.166473 88-89 GTATCAA 13705 0.0 29.762571 1 CGTATGC 6410 0.0 27.732277 86-87 TCAACGC 15420 0.0 25.579596 4 CTCGTAT 6855 0.0 25.3656 84-85 CGCTATC 17780 0.0 25.29935 92-93 GCTATCT 20215 0.0 25.27834 94-95 ATCAACG 15715 0.0 25.126175 3 CAACGCA 15965 0.0 24.653847 5 TCGTATG 6870 0.0 24.002523 84-85 AACGCAG 16430 0.0 23.982115 6 ATCTCGT 10160 0.0 23.974934 94-95 TATCAAC 17150 0.0 23.269114 2 TCTCGTA 7055 0.0 22.911875 82-83 >>END_MODULE