##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139744_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7586179 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.869065968519855 31.0 31.0 34.0 30.0 34.0 2 32.045630349613425 33.0 31.0 34.0 30.0 34.0 3 32.10588018025939 34.0 31.0 34.0 30.0 34.0 4 35.785836453371324 37.0 35.0 37.0 35.0 37.0 5 35.550567420041105 37.0 35.0 37.0 33.0 37.0 6 35.5828523160342 37.0 35.0 37.0 33.0 37.0 7 35.5412329448066 37.0 35.0 37.0 33.0 37.0 8 35.533602357655944 37.0 35.0 37.0 33.0 37.0 9 37.308353124807624 39.0 37.0 39.0 34.0 39.0 10-11 37.163562776464936 39.0 37.0 39.0 33.0 39.0 12-13 37.168448503521994 39.0 37.0 39.0 33.0 39.0 14-15 38.30782301604009 40.0 38.0 41.0 33.5 41.0 16-17 38.23939416668128 40.0 38.0 41.0 33.0 41.0 18-19 38.2996985702552 40.0 38.0 41.0 33.5 41.0 20-21 38.33754416250899 40.0 38.0 41.0 34.0 41.0 22-23 38.32418198042342 40.0 38.0 41.0 34.0 41.0 24-25 38.276753493714004 40.0 38.0 41.0 34.0 41.0 26-27 38.16405736072274 40.0 38.0 41.0 34.0 41.0 28-29 37.99523748713398 40.0 37.0 41.0 33.0 41.0 30-31 37.90563612997551 40.0 37.0 41.0 33.0 41.0 32-33 37.82051664056261 40.0 37.0 41.0 33.0 41.0 34-35 37.75144616121076 40.0 37.0 41.0 33.0 41.0 36-37 37.70894481287782 39.5 37.0 41.0 33.0 41.0 38-39 37.618777596188266 39.0 37.0 41.0 32.5 41.0 40-41 37.60006844327604 39.0 37.0 41.0 32.5 41.0 42-43 37.54604034916545 39.0 37.0 41.0 32.0 41.0 44-45 37.474091582692395 39.0 37.0 41.0 32.0 41.0 46-47 37.415362122950015 39.0 36.0 40.5 32.0 41.0 48-49 37.42166016163689 39.0 36.0 40.5 32.0 41.0 50-51 37.30870981410915 39.0 36.0 40.0 31.5 41.0 52-53 37.11868987721188 39.0 36.0 40.0 31.0 41.0 54-55 36.92088316236941 39.0 35.0 40.0 31.0 41.0 56-57 36.79529760021825 39.0 35.0 40.0 31.0 41.0 58-59 36.59595709287403 38.0 35.0 40.0 30.5 41.0 60-61 36.40964312565079 38.0 35.0 40.0 30.0 41.0 62-63 36.258852777838996 38.0 34.5 40.0 30.0 41.0 64-65 35.99314685701236 37.5 34.0 40.0 30.0 41.0 66-67 35.84157000878929 37.0 34.0 40.0 30.0 41.0 68-69 35.56377764110823 36.5 34.0 39.0 29.0 41.0 70-71 35.23685365587883 36.0 34.0 39.0 29.0 40.5 72-73 34.94263031311117 36.0 34.0 39.0 29.0 40.0 74-75 34.5860644397535 35.0 33.0 38.0 29.0 40.0 76-77 32.45506280057378 33.5 30.5 35.5 26.5 38.5 78-79 33.72615666716966 35.0 32.5 36.0 28.5 39.0 80-81 33.72974986156643 35.0 33.0 36.0 29.0 39.0 82-83 33.56441073627156 35.0 33.0 36.0 29.0 37.5 84-85 33.37089904248263 35.0 33.0 35.5 29.0 37.0 86-87 33.14723532029314 35.0 32.5 35.0 29.0 37.0 88-89 32.99199666381877 34.5 32.0 35.0 29.0 36.0 90-91 32.8416905221938 34.0 32.0 35.0 28.0 36.0 92-93 32.8183826022995 34.0 32.0 35.0 29.0 36.0 94-95 32.786625056792275 34.0 32.0 35.0 29.0 35.0 96-97 32.82041129711086 34.0 32.0 35.0 29.0 35.0 98-99 32.9633029076031 34.0 32.0 35.0 29.0 35.0 100-101 31.746409278601977 33.0 30.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 7.0 20 49.0 21 257.0 22 1210.0 23 4123.0 24 10855.0 25 23595.0 26 43033.0 27 69338.0 28 101385.0 29 137775.0 30 178809.0 31 227087.0 32 290442.0 33 380220.0 34 519325.0 35 741970.0 36 1153067.0 37 1706605.0 38 1537065.0 39 455440.0 40 4517.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.54128184953189 20.29063643238579 13.809376235388065 24.35870548269425 2 15.134146132481252 21.36537338537568 40.18535142424398 23.315129057899085 3 18.602512317855375 25.625555124067017 30.3097938319636 25.462138726114013 4 12.99440099918602 17.664593817042185 38.11554571308993 31.225459470681866 5 13.30969121609179 37.78430485228466 35.631745573100766 13.274258358522781 6 30.901103177238504 37.47658735708714 18.32970194876762 13.292607516906733 7 27.04033572636972 32.33481998445067 22.82125465550637 17.80358963367324 8 24.842735086675145 36.58657924344375 20.970777416809856 17.59990825307125 9 25.700830418053673 16.515376186087884 20.99148991870611 36.79230347715233 10-11 24.507713750585687 26.5332772751117 28.79608861426014 20.162920360042474 12-13 25.04887696187541 24.000155283177264 28.954037959091316 21.99692979585601 14-15 22.164550823280074 25.500894455561884 26.297158292732085 26.037396428425957 16-17 22.01901128479906 28.69159353421489 27.032207322830594 22.25718785815546 18-19 22.085973150403415 28.01151045375798 28.43173692575843 21.47077947008017 20-21 22.747490451932208 27.20183610806889 28.35751746546323 21.693155974535674 22-23 22.490266643410237 27.07301609400344 28.23181651045702 22.2049007521293 24-25 22.299735010180175 27.224164877221074 28.268325913016163 22.207774199582587 26-27 22.277367128199163 27.403213631896396 28.18019985280864 22.139219387095803 28-29 22.252506344451 27.46062948597587 28.1596527702282 22.127211399344933 30-31 22.44703365256022 27.34192446483106 28.06366305101204 22.147378831596686 32-33 22.250098630199414 27.457554569857074 28.05138255825938 22.24096424168413 34-35 22.41131988136304 27.438570404425345 28.03613288359984 22.11397683061178 36-37 22.372474322232954 27.386091731758675 28.022453567098253 22.218980378910114 38-39 22.20471367486876 27.508750192299935 28.088129023748316 22.19840710908299 40-41 22.470695295466182 27.34108582281519 27.969818560642928 22.218400321075695 42-43 22.37886101343695 27.43507865740845 27.793548187192645 22.39251214196195 44-45 22.41103298569437 27.495630400019834 27.676537078404056 22.416799535881744 46-47 22.457855956763296 27.50621965024561 27.521326069997176 22.514598322993912 48-49 22.333054890163687 27.609595949701188 27.543263214970697 22.514085945164428 50-51 22.346955677814215 27.682305969685437 27.484912885783398 22.48582546671695 52-53 22.54061716495887 27.57503006133561 27.314559888727008 22.569792884978515 54-55 22.51250466258917 27.476297984512172 27.371070708945567 22.64012664395309 56-57 22.418559990556325 27.57220867213061 27.42147694918878 22.58775438812429 58-59 22.406269611411986 27.57730798639859 27.38915459332121 22.62726780886821 60-61 22.485490367550003 27.48943062221149 27.45364742443034 22.571431585808167 62-63 22.46496984107093 27.607391626918687 27.380625757577437 22.547012774432947 64-65 22.43394860996398 27.613207628151322 27.28556601108237 22.667277750802327 66-67 22.44123891128538 27.700807518281458 27.17812885519169 22.67982471524147 68-69 22.43575435529624 27.68023481914919 27.221007702962748 22.663003122591824 70-71 22.431144729957694 27.516008994979295 27.238620070163304 22.8142262048997 72-73 22.45711681916249 27.53127883765153 27.179190653074325 22.832413690111654 74-75 22.37856121010957 27.63449687289119 27.147892760246567 22.839049156752672 76-77 22.548829115499824 27.577043695773124 27.086796330941628 22.787330857785424 78-79 22.558772234319292 27.534059772470776 27.024124834557924 22.883043158652004 80-81 22.539174765537435 27.57305171187896 27.05189629347316 22.835877229110444 82-83 22.562507314992875 27.55611497686074 27.105590328335506 22.77578737981088 84-85 22.63206707798099 27.598692160870037 27.08039200153618 22.688848759612792 86-87 22.53808103350243 27.56537507320813 27.143055942109655 22.753487951179782 88-89 22.524509893153493 27.622624879489738 27.111103136326687 22.741762091030086 90-91 22.595588095975636 27.59249704003303 27.161441247244376 22.650473616746957 92-93 22.634000575461908 27.51366452867705 27.219285348806267 22.633049547054775 94-95 22.509807725568535 27.61741130951782 27.233631141667757 22.639149823245887 96-97 22.484985625862677 27.60400963666631 27.29326260741204 22.617742130058975 98-99 22.68804159530772 28.14327841834591 27.41729134989206 21.751388636454312 100-101 23.529886327517715 30.724970399144613 24.353196310477525 21.39194696286015 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1382.0 1 1181.0 2 1430.0 3 1992.0 4 2632.0 5 4215.5 6 5665.5 7 6673.5 8 7353.0 9 7350.5 10 6774.0 11 6120.5 12 6547.5 13 8677.0 14 13698.0 15 20663.0 16 26443.0 17 29921.0 18 31343.5 19 30950.5 20 29567.0 21 28157.0 22 27863.5 23 30199.5 24 35600.0 25 44280.5 26 56445.0 27 70354.5 28 85941.5 29 103068.5 30 119792.0 31 136972.0 32 154782.0 33 171909.5 34 188436.5 35 204664.0 36 222825.5 37 240099.5 38 254199.0 39 267022.0 40 279808.0 41 292125.5 42 300622.5 43 307740.5 44 314754.0 45 320359.0 46 324051.5 47 325586.0 48 324451.5 49 320031.5 50 314828.5 51 307131.0 52 295063.5 53 281136.0 54 266702.5 55 250741.5 56 232805.5 57 212450.0 58 190138.5 59 165383.0 60 138904.5 61 114017.0 62 91495.5 63 71007.0 64 53088.5 65 39703.0 66 30165.0 67 23247.5 68 17945.0 69 13287.0 70 9568.0 71 6898.0 72 4942.0 73 3456.5 74 2361.0 75 1616.5 76 1081.0 77 711.5 78 494.5 79 345.0 80 245.5 81 189.5 82 157.0 83 113.0 84 77.0 85 56.0 86 41.5 87 33.0 88 23.5 89 15.5 90 12.0 91 9.0 92 6.0 93 4.0 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 6.459114661017094E-4 3 4.877290662400663E-4 4 5.272746662054771E-5 5 0.0 6 0.0 7 1.3181866655136927E-5 8 0.0012390954655828713 9 0.0 10-11 2.4386453312003314E-4 12-13 5.075018662227717E-4 14-15 0.0 16-17 6.5909333275684635E-6 18-19 4.1522879963681327E-4 20-21 0.0 22-23 0.0 24-25 1.1209091760262582E-4 26-27 0.0 28-29 5.214544857363056E-4 30-31 2.577583955214016E-4 32-33 0.0010002022263176785 34-35 0.0010362823715348644 36-37 4.002274092139154E-5 38-39 0.0015162364435211653 40-41 4.1848742445289524E-4 42-43 1.6307941777386265E-4 44-45 1.301238847869427E-4 46-47 4.8373690351439005E-5 48-49 2.7888465937062565E-5 50-51 4.9214664029416875E-5 52-53 4.250953028244324E-5 54-55 3.069714355226489E-4 56-57 5.614349066970763E-4 58-59 5.880666466820808E-4 60-61 4.615747450330711E-4 62-63 8.132572164009435E-5 64-65 7.464377192894063E-5 66-67 1.5840322309826747E-4 68-69 1.0679688970841092E-4 70-71 1.080384129033672E-4 72-73 0.0 74-75 7.897237356838881E-6 76-77 8.711951550679421E-4 78-79 2.4268742345234182E-5 80-81 2.3768925392129897E-4 82-83 2.491977079791611E-5 84-85 1.683667074029915E-5 86-87 0.0 88-89 1.7336484875130503E-5 90-91 6.168889023625259E-5 92-93 1.1663542332647457E-4 94-95 4.3010134743431277E-4 96-97 8.442676151982054E-5 98-99 9.851104495984984E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 226.0 20-21 692.0 22-23 1354.0 24-25 3051.0 26-27 4294.0 28-29 7635.0 30-31 15856.0 32-33 20047.0 34-35 27496.0 36-37 41081.0 38-39 45105.0 40-41 48054.0 42-43 54747.0 44-45 64525.0 46-47 65069.0 48-49 60946.0 50-51 56360.0 52-53 51590.0 54-55 57081.0 56-57 58396.0 58-59 62452.0 60-61 61954.0 62-63 62925.0 64-65 68335.0 66-67 73596.0 68-69 75254.0 70-71 74927.0 72-73 72919.0 74-75 76602.0 76-77 73120.0 78-79 79540.0 80-81 81750.0 82-83 79549.0 84-85 81714.0 86-87 86972.0 88-89 92851.0 90-91 99520.0 92-93 105726.0 94-95 123584.0 96-97 188076.0 98-99 677872.0 100-101 4503336.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.1259055281299 #Duplication Level Percentage of deduplicated Percentage of total 1 90.97583179097401 79.26351725963438 2 6.488957238631618 11.30712550698186 3 1.4560483976113703 3.8057860540401953 4 0.5029919404734275 1.7529451314839433 5 0.23500780416470446 1.0237633872013645 6 0.11247589440976616 0.587973849032232 7 0.0676163350847193 0.41237940959247404 8 0.043396754292054356 0.30247852117415946 9 0.025648936961770043 0.20112181727653225 >10 0.08999675902589666 1.1990324750706562 >50 0.001711693360227434 0.09497943375731333 >100 2.9375248594947265E-4 0.03764245993862012 >500 2.270252443680351E-5 0.011254694816193409 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.6363733310273854E-5 2 0.0 1.3181866655136927E-5 0.0 0.0 2.6363733310273854E-5 3 0.0 1.3181866655136927E-5 0.0 0.0 2.6363733310273854E-5 4 0.0 2.6363733310273854E-5 0.0 1.3181866655136927E-5 2.6363733310273854E-5 5 0.0 2.6363733310273854E-5 0.0 1.3181866655136927E-5 2.6363733310273854E-5 6 0.0 2.6363733310273854E-5 0.0 1.3181866655136927E-5 2.6363733310273854E-5 7 0.0 2.6363733310273854E-5 0.0 1.3181866655136927E-5 2.6363733310273854E-5 8 0.0 2.6363733310273854E-5 0.0 1.3181866655136927E-5 2.6363733310273854E-5 9 0.0 7.909119993082156E-5 0.0 6.590933327568463E-5 3.954559996541078E-5 10-11 0.0 7.909119993082156E-5 0.0 9.886399991352696E-5 3.954559996541078E-5 12-13 0.0 8.568213325839004E-5 0.0 1.0545493324109542E-4 4.613653329297924E-5 14-15 0.0 2.504554664476016E-4 0.0 1.0545493324109542E-4 9.886399991352696E-5 16-17 0.0 2.768191997578755E-4 0.0 1.0545493324109542E-4 1.3181866655136927E-4 18-19 0.0 2.9659199974058087E-4 0.0 1.0545493324109542E-4 1.3181866655136927E-4 20-21 0.0 3.1636479972328626E-4 0.0 1.3181866655136927E-4 1.450005332065062E-4 22-23 0.0 3.7568319967140243E-4 0.0 1.7795519984434852E-4 1.7136426651678008E-4 24-25 0.0 4.086378663092447E-4 0.0 2.768191997578755E-4 1.977279998270539E-4 26-27 0.0 4.2181973296438166E-4 0.0 5.602293328433194E-4 1.977279998270539E-4 28-29 0.0 4.2181973296438166E-4 0.0 0.002135462398132182 1.977279998270539E-4 30-31 0.0 4.2181973296438166E-4 0.0 0.007137980793756646 1.977279998270539E-4 32-33 0.0 4.2181973296438166E-4 0.0 0.01729460905153965 2.1090986648219083E-4 34-35 0.0 4.8772906624006633E-4 0.0 0.03133329703926048 2.2409173313732778E-4 36-37 0.0 5.470474661881825E-4 0.0 0.050539276755794976 2.3068266646489625E-4 38-39 0.0 5.53638399515751E-4 0.0 0.08065984206278286 2.372735997924647E-4 40-41 0.0 6.195477327914356E-4 0.0 0.1352789065483427 2.372735997924647E-4 42-43 0.0 6.854570660671203E-4 0.0 0.16166900359192682 2.4386453312003317E-4 44-45 0.0 7.645482659979419E-4 0.0 0.1979191368935534 2.5045546644760164E-4 46-47 0.0 8.304575992736264E-4 0.0 0.2373131453924301 2.636373331027386E-4 48-49 0.0 8.436394659287634E-4 0.0 0.26802030376557157 3.427285330335601E-4 50-51 0.0 9.425034658422902E-4 0.0 0.299248145871591 3.427285330335601E-4 52-53 0.0 9.622762658249957E-4 0.0 0.3403360242356528 3.493194663611286E-4 54-55 0.0 9.622762658249957E-4 0.0 0.42249859909712123 3.7568319967140243E-4 56-57 0.0 9.622762658249957E-4 0.0 0.5112191526195203 4.0204693298167627E-4 58-59 0.0 9.754581324801326E-4 0.0 0.5957874181455514 4.0863786630924477E-4 60-61 0.0 0.0010018218657904063 0.0 0.642925773304321 4.0863786630924477E-4 62-63 0.0 0.0010281855991006803 0.0 0.682985466069282 4.2181973296438166E-4 64-65 0.0 0.001278641065548282 0.0 0.6998582553878574 4.2181973296438166E-4 66-67 0.0 0.0012918229322034188 0.0 0.7068644175150626 4.2841066629195016E-4 68-69 0.0 0.0013181866655136926 0.0 0.7137651247090268 4.4159253294708705E-4 70-71 0.0 0.001337959465496398 0.0 0.7195783279039422 4.4818346627465555E-4 72-73 0.0 0.0013445503988239666 0.0 0.7247851652327213 4.8772906624006633E-4 74-75 0.0 0.0013577322654791035 0.0 0.7292076814955197 4.8772906624006633E-4 76-77 0.0 0.0013906869321169458 0.0 0.7330633774921473 4.8772906624006633E-4 78-79 0.0 0.0014104597320996513 0.0 0.7364313444225348 4.8772906624006633E-4 80-81 0.0 0.0014170506654272198 0.0 0.7381713508210128 5.075018662227717E-4 82-83 0.0 0.0014434143987374936 0.0 0.7388963534870453 5.272746662054771E-4 84-85 0.0 0.001450005332065062 0.0 0.7395224921531643 5.272746662054771E-4 86-87 0.0 0.0014697781320477674 0.0 0.7398520388195428 5.272746662054771E-4 88-89 0.0 0.001476369065375336 0.0 0.7400431758860422 5.470474661881825E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7310 0.0 45.44978 1 GTATCAA 12180 0.0 33.284626 1 TCAACGC 14245 0.0 27.534008 4 ATCAACG 14500 0.0 27.079483 3 CAACGCA 14795 0.0 26.539192 5 AACGCAG 15265 0.0 25.66633 6 TATCAAC 15695 0.0 25.23452 2 GTACATG 19540 0.0 22.641588 1 TACATGG 19680 0.0 21.74601 2 ACGCAGA 18530 0.0 21.18982 7 ACATGGG 20215 0.0 20.602297 3 CGCAGAG 19025 0.0 20.571413 8 CATGGGG 15285 0.0 18.841879 4 GTGGTAT 4120 0.0 17.139927 1 GAGTACT 12560 0.0 16.866886 12-13 GCAGAGT 23465 0.0 16.660473 9 AGAGTAC 20095 0.0 16.353205 10-11 CAGAGTA 22210 0.0 16.11751 10-11 TATACTG 4030 0.0 15.411637 5 ATGGGGG 9500 0.0 15.40408 5 >>END_MODULE