##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139743_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5721153 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83699002631113 31.0 31.0 34.0 30.0 34.0 2 32.02384589260242 33.0 31.0 34.0 30.0 34.0 3 32.085352200858814 33.0 31.0 34.0 30.0 34.0 4 35.76772689001675 37.0 35.0 37.0 35.0 37.0 5 35.53286234435611 37.0 35.0 37.0 33.0 37.0 6 35.56284353870627 37.0 35.0 37.0 33.0 37.0 7 35.52349500179422 37.0 35.0 37.0 33.0 37.0 8 35.51361569949274 37.0 35.0 37.0 33.0 37.0 9 37.28197917447759 39.0 37.0 39.0 34.0 39.0 10-11 37.139303563460025 39.0 37.0 39.0 33.0 39.0 12-13 37.14515832735115 39.0 37.0 39.0 33.0 39.0 14-15 38.28289909394138 40.0 38.0 41.0 33.5 41.0 16-17 38.21066688830031 40.0 38.0 41.0 33.0 41.0 18-19 38.2719382788749 40.0 38.0 41.0 33.5 41.0 20-21 38.31341679708956 40.0 38.0 41.0 34.0 41.0 22-23 38.29709508216629 40.0 38.0 41.0 34.0 41.0 24-25 38.25241894709758 40.0 38.0 41.0 34.0 41.0 26-27 38.1375556671977 40.0 38.0 41.0 33.5 41.0 28-29 37.97252632482484 40.0 37.0 41.0 33.0 41.0 30-31 37.878585361685865 40.0 37.0 41.0 33.0 41.0 32-33 37.78922353326968 40.0 37.0 41.0 33.0 41.0 34-35 37.72002266982401 40.0 37.0 41.0 33.0 41.0 36-37 37.675712683866735 39.5 37.0 41.0 33.0 41.0 38-39 37.586101218977795 39.0 37.0 41.0 32.5 41.0 40-41 37.569398578811914 39.0 37.0 41.0 32.0 41.0 42-43 37.518773503055506 39.0 37.0 41.0 32.0 41.0 44-45 37.44889795407725 39.0 36.5 41.0 32.0 41.0 46-47 37.39225635342894 39.0 36.0 40.5 32.0 41.0 48-49 37.402544231826134 39.0 36.0 40.0 32.0 41.0 50-51 37.29114717883766 39.0 36.0 40.0 31.5 41.0 52-53 37.109803749352025 39.0 36.0 40.0 31.0 41.0 54-55 36.91845929557897 39.0 35.0 40.0 31.0 41.0 56-57 36.79481836828435 39.0 35.0 40.0 31.0 41.0 58-59 36.604452063569184 38.0 35.0 40.0 30.5 41.0 60-61 36.426144793568426 38.0 35.0 40.0 30.0 41.0 62-63 36.28615627069125 38.0 34.5 40.0 30.0 41.0 64-65 36.030883860928505 37.5 34.0 40.0 30.0 41.0 66-67 35.89055033702459 37.0 34.0 40.0 30.0 41.0 68-69 35.62201445732967 37.0 34.0 39.0 29.5 41.0 70-71 35.302590134322735 36.0 34.0 39.0 29.0 40.5 72-73 35.00778401467055 36.0 34.0 39.0 29.0 40.0 74-75 34.65505902868403 35.0 33.5 38.5 29.0 40.0 76-77 32.511402998671315 33.5 30.5 35.5 26.5 38.5 78-79 33.77832724709589 35.0 32.5 37.0 28.0 39.0 80-81 33.77809775735357 35.0 33.0 36.0 29.0 39.0 82-83 33.606456434312 35.0 33.0 36.0 29.0 37.5 84-85 33.405036582836296 35.0 33.0 36.0 29.0 37.0 86-87 33.17148269034409 35.0 32.0 35.0 29.0 37.0 88-89 33.00972175746277 34.5 32.0 35.0 28.5 36.0 90-91 32.849688888422854 34.0 32.0 35.0 28.0 36.0 92-93 32.82204286715415 34.0 32.0 35.0 28.5 36.0 94-95 32.78800964471519 34.0 32.0 35.0 29.0 35.5 96-97 32.81775198798104 34.0 32.0 35.0 29.0 35.0 98-99 32.96063405667165 34.0 32.0 35.0 29.0 35.0 100-101 31.743799518140726 33.0 30.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 32.0 21 213.0 22 929.0 23 3232.0 24 8312.0 25 18014.0 26 33069.0 27 53376.0 28 77857.0 29 106026.0 30 137345.0 31 174085.0 32 220421.0 33 289142.0 34 393802.0 35 557673.0 36 860443.0 37 1275063.0 38 1165178.0 39 343521.0 40 3414.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.35626157874121 20.47435193570247 13.76792405307112 24.4014624324852 2 15.087766829076449 21.49912823089864 40.24956630033429 23.16353863969062 3 18.54480248146609 25.642853322435727 30.4674562770248 25.34488791907339 4 12.798128487826485 17.854437980902087 38.25764719639359 31.08978633487784 5 13.059500418884095 37.872296021448825 35.94191590401445 13.126287655652627 6 30.632269404436485 37.811923575544995 18.36234758972536 13.193459430293158 7 26.88669574122559 32.348059910301295 22.924102886253873 17.84114146221924 8 24.632758624607394 36.92201903095226 21.040687797680903 17.404534546759443 9 25.354906607112238 16.589505646851254 21.14620951406124 36.90937823197527 10-11 24.254324293783235 26.732712984561722 28.99904590635095 20.013916815304093 12-13 24.806408386037823 24.1353694467796 29.18901402057304 21.869208146609537 14-15 21.86861634359368 25.754965825944527 26.409825082461523 25.966592748000274 16-17 21.790170617705908 29.009895382976126 27.205136796726116 21.994797202591858 18-19 21.825254010267557 28.236630649870207 28.65078855966665 21.28732678019558 20-21 22.413844639011252 27.443816547066284 28.608860525617054 21.533478288305403 22-23 22.121010312257468 27.420044101361977 28.487282376596124 21.971663209784428 24-25 21.998688887843606 27.527208899615285 28.525039042220158 21.949063170320954 26-27 21.9745722380872 27.729034105584592 28.424734606689427 21.871659049638776 28-29 21.913464628733514 27.787098115852427 28.464700503228237 21.834736752185826 30-31 22.209113334315404 27.58643504392198 28.379818279441082 21.824633342321533 32-33 21.9346707918764 27.71915601166536 28.3771920079872 21.96898118847104 34-35 22.087777812609964 27.6717245348641 28.395894482898786 21.844603169627145 36-37 22.04260093254189 27.743377697148446 28.301346828137515 21.912674542172148 38-39 21.89294480900211 27.755971490118714 28.43469478655373 21.91638891432544 40-41 22.12606915849124 27.580164587791465 28.358885475736802 21.934880777980492 42-43 22.054294825081577 27.662912690143443 28.20802273319839 22.074769751576593 44-45 22.042074671533072 27.79222053491644 28.076629194694476 22.089075598856017 46-47 22.14961197326063 27.73894959375235 27.84336309720362 22.2680753357834 48-49 22.076742896627817 27.81377859084816 27.874417527632556 22.235060984891465 50-51 22.03712748458307 27.921916929722297 27.858521328523317 22.18243425717132 52-53 22.149156149152216 27.871579577084866 27.77344202657227 22.205822247190653 54-55 22.158827994938566 27.767347640728783 27.75055543978161 22.323268924551037 56-57 22.121208577743033 27.904768939844438 27.708242958666702 22.265779523745827 58-59 22.065419005679573 27.906286637932688 27.766856420326853 22.261437936060886 60-61 22.197034892193855 27.934565979194716 27.70238717027616 22.16601195833527 62-63 22.108168876538333 28.021441387130853 27.701223776547906 22.16916595978291 64-65 22.082419677311616 27.969905320563377 27.623668962859938 22.324006039265072 66-67 22.12174704995573 28.06711409796698 27.489678738514804 22.321460113562487 68-69 22.06850838954189 28.0607293801938 27.52434586517591 22.346416365088402 70-71 22.088014228178174 27.870829926558045 27.587299453590695 22.45385639167309 72-73 22.090005645819343 27.892865721489564 27.509293298207904 22.50783533448319 74-75 22.05143881087311 27.966889592978518 27.484709186208477 22.496962409939897 76-77 22.221713139978995 27.909891041804702 27.420012641819834 22.448383176396472 78-79 22.230543424454215 27.889035333546303 27.342142117632257 22.53827912436722 80-81 22.197147927806256 27.946981153327418 27.35340278567438 22.502468133191947 82-83 22.20223844672395 27.958077791258052 27.441479643764932 22.398204118253066 84-85 22.293400012045588 27.956479697563154 27.39138511214197 22.358735178249294 86-87 22.175610061430884 27.918268757880053 27.464925379807394 22.441195800881673 88-89 22.235810676805958 27.95442579745613 27.425678051599313 22.3840854741386 90-91 22.224842081789305 28.009960432185448 27.48298086367286 22.282216622352387 92-93 22.260348885723623 27.9414027016517 27.51357615540994 22.284672257214734 94-95 22.14325535366672 27.971449658093928 27.584176212880273 22.301118775359075 96-97 22.109841047281222 27.947459816622562 27.635992623415788 22.306706512680428 98-99 22.292997635292537 28.52543699740022 27.73856130987522 21.44300405743202 100-101 23.108448154239568 31.144174645468386 24.821791613302757 20.925585586989286 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1187.0 1 993.0 2 1181.0 3 1636.0 4 2134.5 5 3346.0 6 4408.0 7 5170.0 8 5825.5 9 5940.0 10 5527.0 11 5006.0 12 5282.0 13 6946.5 14 11025.5 15 16649.0 16 21197.0 17 23814.5 18 24788.0 19 24658.5 20 23762.5 21 22657.5 22 22578.0 23 24665.0 24 29405.5 25 36716.5 26 46434.0 27 57362.5 28 69960.5 29 83821.0 30 97263.5 31 110917.5 32 124602.0 33 137970.5 34 150383.0 35 162298.0 36 175315.0 37 186957.5 38 196943.5 39 205971.5 40 214555.0 41 222414.0 42 227501.5 43 232002.5 44 236210.0 45 238405.5 46 240381.0 47 241721.0 48 239732.5 49 235840.5 50 232047.5 51 225720.0 52 214755.5 53 202442.0 54 189808.5 55 176359.5 56 162504.0 57 147722.5 58 131992.0 59 114858.0 60 96912.0 61 79631.5 62 63677.5 63 49386.5 64 37348.5 65 28174.5 66 21266.5 67 16221.5 68 12321.0 69 9124.0 70 6706.0 71 4909.0 72 3596.0 73 2535.5 74 1753.0 75 1251.0 76 878.0 77 555.5 78 372.0 79 276.5 80 204.0 81 145.0 82 110.5 83 86.0 84 65.0 85 52.5 86 44.0 87 31.5 88 19.5 89 10.5 90 5.0 91 4.0 92 4.0 93 3.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.894118370894819E-4 3 3.321008894535769E-4 4 6.991597672706884E-5 5 0.0 6 0.0 7 0.0 8 9.089076974518948E-4 9 0.0 10-11 2.884034039991589E-4 12-13 4.282353574532966E-4 14-15 0.0 16-17 0.0 18-19 4.544538487259474E-4 20-21 0.0 22-23 0.0 24-25 1.836043260326716E-4 26-27 0.0 28-29 4.988845554006485E-4 30-31 4.0310909280035764E-4 32-33 0.0012469965604849096 34-35 0.0012680320318980503 36-37 1.768186818131907E-5 38-39 0.00160914477866747 40-41 3.934453788275417E-4 42-43 9.899954658207664E-5 44-45 1.9043364734028126E-4 46-47 5.4882231877429686E-5 48-49 2.7676366956521255E-5 50-51 2.789889255346009E-5 52-53 1.873568769107474E-5 54-55 3.584839036482058E-4 56-57 5.989291147428398E-4 58-59 4.6006871893098435E-4 60-61 5.318741543200946E-4 62-63 1.2685347564862133E-4 64-65 4.924703257080541E-5 66-67 1.592208844461397E-4 68-69 9.052368859086703E-5 70-71 1.6269115575288638E-4 72-73 0.0 74-75 0.0 76-77 7.56611921240482E-4 78-79 3.188199072425362E-5 80-81 2.2591557126302295E-4 82-83 4.357453691433236E-5 84-85 1.1030754515742707E-5 86-87 1.117737930917313E-5 88-89 3.401837264269687E-5 90-91 4.6074695143899914E-5 92-93 7.029871211587759E-5 94-95 3.462690701720241E-4 96-97 4.8922805439139656E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 201.0 20-21 509.0 22-23 1057.0 24-25 2196.0 26-27 3269.0 28-29 5632.0 30-31 11310.0 32-33 14487.0 34-35 19915.0 36-37 29809.0 38-39 32690.0 40-41 35109.0 42-43 39812.0 44-45 46781.0 46-47 47338.0 48-49 44095.0 50-51 40736.0 52-53 36138.0 54-55 40300.0 56-57 41696.0 58-59 46068.0 60-61 46754.0 62-63 46603.0 64-65 50301.0 66-67 54067.0 68-69 53694.0 70-71 52965.0 72-73 51854.0 74-75 55123.0 76-77 51928.0 78-79 56405.0 80-81 58214.0 82-83 56901.0 84-85 58569.0 86-87 62751.0 88-89 67356.0 90-91 72357.0 92-93 77324.0 94-95 91401.0 96-97 141283.0 98-99 515095.0 100-101 3461060.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.85890371976527 #Duplication Level Percentage of deduplicated Percentage of total 1 92.6175646440271 83.22512824106767 2 5.598536320566082 10.061566724027129 3 1.087700232214033 2.932186513274613 4 0.34457317700699824 1.2385187174834196 5 0.143427731151281 0.6444129342133668 6 0.06575957860884325 0.3545450185718629 7 0.0432860691244951 0.2722747102505576 8 0.027503046913884013 0.19771149157079126 9 0.0171661661410439 0.1388279583455002 >10 0.05305178316599471 0.7444032432660501 >50 7.829928988660633E-4 0.05003382197798905 >100 6.217196082248685E-4 0.12465142714237325 >500 2.653857317982406E-5 0.015739198808689986 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7478994181767206E-5 0.0 1.7478994181767206E-5 0.0 3 0.0 1.7478994181767206E-5 0.0 3.495798836353441E-5 0.0 4 0.0 6.991597672706882E-5 0.0 3.495798836353441E-5 0.0 5 0.0 1.0487396509060324E-4 0.0 3.495798836353441E-5 0.0 6 1.7478994181767206E-5 1.0487396509060324E-4 0.0 5.243698254530162E-5 1.7478994181767206E-5 7 3.495798836353441E-5 1.0487396509060324E-4 0.0 5.243698254530162E-5 1.7478994181767206E-5 8 3.495798836353441E-5 1.3983195345413765E-4 0.0 5.243698254530162E-5 1.7478994181767206E-5 9 3.495798836353441E-5 2.447059185447409E-4 0.0 6.991597672706882E-5 3.495798836353441E-5 10-11 6.117647963618522E-5 2.447059185447409E-4 0.0 9.613446799971964E-5 3.495798836353441E-5 12-13 6.991597672706882E-5 2.621849127265081E-4 0.0 1.2235295927237044E-4 5.243698254530162E-5 14-15 7.865547381795243E-5 3.146218952718097E-4 0.0 1.3109245636325404E-4 5.243698254530162E-5 16-17 8.739497090883603E-5 3.321008894535769E-4 0.0 1.3983195345413765E-4 5.243698254530162E-5 18-19 8.739497090883603E-5 3.5831938072622773E-4 0.0 2.0100843309032288E-4 5.243698254530162E-5 20-21 8.739497090883603E-5 4.0201686618064576E-4 0.0 2.447059185447409E-4 6.117647963618522E-5 22-23 9.613446799971964E-5 4.369748545441802E-4 0.0 3.4957988363534413E-4 7.865547381795243E-5 24-25 1.0487396509060324E-4 5.156303283621326E-4 0.0 4.894118370894817E-4 1.0487396509060324E-4 26-27 1.0487396509060324E-4 5.768068079983178E-4 0.0 8.215127265430587E-4 1.0487396509060324E-4 28-29 1.0487396509060324E-4 5.855463050892015E-4 0.0 0.002228571758175319 1.0487396509060324E-4 30-31 1.1361346218148683E-4 6.991597672706883E-4 0.0 0.006790589239616561 1.0487396509060324E-4 32-33 1.3109245636325404E-4 6.991597672706883E-4 0.0 0.014830926563229475 1.2235295927237044E-4 34-35 1.3983195345413765E-4 8.389917207248259E-4 0.0 0.02660302914464969 1.4857145054502125E-4 36-37 1.3983195345413765E-4 9.613446799971964E-4 0.0 0.043295468588237365 1.5731094763590486E-4 38-39 1.3983195345413765E-4 0.0010050421654516145 0.0 0.07138421223833727 1.7478994181767207E-4 40-41 1.3983195345413765E-4 0.0010749581421786833 0.0 0.12534186727745264 1.9226893599943927E-4 42-43 1.3983195345413765E-4 0.0011099161305422175 0.0 0.14866758501302096 1.9226893599943927E-4 44-45 1.3983195345413765E-4 0.0012410085869054717 0.0 0.18165918653110658 2.0100843309032288E-4 46-47 1.3983195345413765E-4 0.001345882551996075 0.0 0.22014793171935798 2.272269243629737E-4 48-49 1.3983195345413765E-4 0.001345882551996075 0.0 0.24956507892727217 2.272269243629737E-4 50-51 1.5731094763590486E-4 0.0014857145054502127 0.0 0.28069516756499957 2.272269243629737E-4 52-53 1.7478994181767207E-4 0.0014857145054502127 0.0 0.3227933250517859 2.621849127265081E-4 54-55 1.7478994181767207E-4 0.0015468909850863979 0.0 0.4101358589780766 2.971429010900425E-4 56-57 1.7478994181767207E-4 0.001608067464722583 0.0 0.5059469655854336 2.971429010900425E-4 58-59 1.7478994181767207E-4 0.001651764950177001 0.0 0.6016007612451546 2.971429010900425E-4 60-61 1.7478994181767207E-4 0.0017129414298131863 0.0 0.6494320288235605 2.971429010900425E-4 62-63 1.7478994181767207E-4 0.0017478994181767207 0.0 0.6745668224569418 3.321008894535769E-4 64-65 1.7478994181767207E-4 0.0018877313716308584 0.0 0.6895463204707163 3.321008894535769E-4 66-67 1.7478994181767207E-4 0.001896470868721742 0.0 0.696022287815061 3.321008894535769E-4 68-69 1.7478994181767207E-4 0.0019314288570852762 0.0 0.7027953980604958 3.321008894535769E-4 70-71 1.7478994181767207E-4 0.0019838658396305778 0.0 0.7087557350764784 3.321008894535769E-4 72-73 1.7478994181767207E-4 0.002027563325084996 0.0 0.7132478365811927 4.1949586036241297E-4 74-75 1.7478994181767207E-4 0.0020974793018120647 0.0 0.7172243077575446 4.2823535745329657E-4 76-77 1.7478994181767207E-4 0.002123697793084716 0.0 0.7205278376578987 4.369748545441802E-4 78-79 1.7478994181767207E-4 0.0021324372901755993 0.0 0.72439943486916 4.369748545441802E-4 80-81 1.7478994181767207E-4 0.0021499162843573666 0.0 0.7259375863571557 4.369748545441802E-4 82-83 1.7478994181767207E-4 0.0021761347756300174 0.0 0.7265231326622448 4.369748545441802E-4 84-85 1.7478994181767207E-4 0.002184874272720901 0.0 0.7271261579615158 4.457143516350638E-4 86-87 1.9226893599943927E-4 0.002202353266902668 0.0 0.7274233008626059 4.544538487259474E-4 88-89 1.9226893599943927E-4 0.002272269243629737 0.0 0.7275106958335147 4.544538487259474E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5610 0.0 45.84395 1 GTATCAA 9420 0.0 32.65352 1 TCAACGC 10680 0.0 28.161114 4 ATCAACG 10910 0.0 27.528515 3 CAACGCA 11120 0.0 27.123661 5 TATCAAC 11610 0.0 26.273516 2 AACGCAG 11505 0.0 26.253138 6 GTACATG 14055 0.0 22.432306 1 ACGCAGA 13765 0.0 22.035887 7 TACATGG 14040 0.0 21.695747 2 CGCAGAG 14165 0.0 21.353306 8 ACATGGG 14495 0.0 20.837875 3 CATGGGG 10720 0.0 18.013248 4 GAGTACT 10080 0.0 17.50433 12-13 GCAGAGT 17310 0.0 17.276096 9 GTGGTAT 3370 0.0 16.860489 1 AGAGTAC 14900 0.0 16.543756 10-11 CAGAGTA 16715 0.0 16.5109 10-11 TGGTATC 3250 0.0 16.43156 2 GAGTACA 10160 0.0 15.894486 1 >>END_MODULE