##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139739_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 27770809 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.666181384921124 31.0 31.0 34.0 30.0 34.0 2 31.864336469276065 31.0 31.0 34.0 30.0 34.0 3 31.921447769130527 33.0 31.0 34.0 30.0 34.0 4 35.637861900242086 37.0 35.0 37.0 33.0 37.0 5 35.38119476461777 37.0 35.0 37.0 33.0 37.0 6 35.40684626796432 37.0 35.0 37.0 33.0 37.0 7 35.36490262131002 37.0 35.0 37.0 33.0 37.0 8 35.35088556476695 37.0 35.0 37.0 33.0 37.0 9 37.099413596485434 39.0 37.0 39.0 33.0 39.0 10-11 36.94184035113993 39.0 37.0 39.0 33.0 39.0 12-13 36.94440649892482 39.0 37.0 39.0 33.0 39.0 14-15 38.03905104096896 40.0 37.0 41.0 33.0 41.0 16-17 37.95768169735351 40.0 37.0 41.0 33.0 41.0 18-19 38.015386480098584 40.0 37.0 41.0 33.0 41.0 20-21 38.05548421181839 40.0 37.0 41.0 33.0 41.0 22-23 38.03736711060659 40.0 37.0 41.0 33.0 41.0 24-25 37.988130161628916 40.0 37.0 41.0 33.0 41.0 26-27 37.858099678997114 40.0 37.0 41.0 33.0 41.0 28-29 37.681769446165575 39.0 37.0 41.0 32.5 41.0 30-31 37.58056583415817 39.0 37.0 40.5 32.0 41.0 32-33 37.484066175419635 39.0 36.5 40.0 32.0 41.0 34-35 37.410464668671395 39.0 36.0 40.0 32.0 41.0 36-37 37.35981361745861 39.0 36.0 40.0 31.5 41.0 38-39 37.26466541955644 39.0 36.0 40.0 31.0 41.0 40-41 37.250112765646634 39.0 36.0 40.0 31.0 41.0 42-43 37.19434905058808 39.0 36.0 40.0 31.0 41.0 44-45 37.11794613187301 39.0 36.0 40.0 31.0 41.0 46-47 37.05578113593171 39.0 36.0 40.0 31.0 41.0 48-49 37.065801422616474 39.0 36.0 40.0 31.0 41.0 50-51 36.94450903989829 39.0 35.5 40.0 31.0 41.0 52-53 36.753465269633374 39.0 35.0 40.0 30.5 41.0 54-55 36.552962007387436 38.0 35.0 40.0 30.0 41.0 56-57 36.420611941050296 38.0 35.0 40.0 30.0 41.0 58-59 36.22244693231593 38.0 34.5 40.0 29.5 41.0 60-61 36.03830492298296 38.0 34.0 40.0 29.0 41.0 62-63 35.896679638727434 38.0 34.0 40.0 29.0 41.0 64-65 35.642116846652314 37.0 34.0 40.0 29.0 41.0 66-67 35.49954639065018 37.0 34.0 39.0 29.0 41.0 68-69 35.23101639814072 36.0 34.0 39.0 29.0 40.5 70-71 34.91025438567681 36.0 33.0 39.0 28.5 40.0 72-73 34.61825627478164 35.5 33.0 38.5 28.0 40.0 74-75 34.268411885800056 35.0 33.0 37.5 28.0 39.5 76-77 32.14990735633648 33.5 30.0 35.5 25.5 38.5 78-79 33.42647724240618 35.0 32.0 36.0 27.0 39.0 80-81 33.44511259903796 35.0 32.0 36.0 28.0 39.0 82-83 33.29244806715677 35.0 32.0 36.0 28.0 37.5 84-85 33.10199650890548 34.5 32.0 35.5 27.5 37.0 86-87 32.87132021287975 34.0 32.0 35.0 27.0 36.5 88-89 32.717791241421445 34.0 32.0 35.0 27.0 36.0 90-91 32.56854433618343 34.0 32.0 35.0 27.0 36.0 92-93 32.55148722245515 34.0 32.0 35.0 27.0 36.0 94-95 32.528962945792856 34.0 32.0 35.0 27.0 35.0 96-97 32.57516778142127 34.0 32.0 35.0 27.5 35.0 98-99 32.74564191097036 34.0 32.0 35.0 29.0 35.0 100-101 31.555799351807806 33.0 29.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 8.0 19 29.0 20 206.0 21 1366.0 22 6135.0 23 20729.0 24 52790.0 25 110749.0 26 197833.0 27 311514.0 28 445595.0 29 598410.0 30 768284.0 31 967167.0 32 1223589.0 33 1581524.0 34 2126702.0 35 2977573.0 36 4436158.0 37 6023407.0 38 4753659.0 39 1158792.0 40 8590.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.33973914839859 20.57183137876898 13.762649118360217 24.325780354472208 2 15.395826433070676 21.62595070585591 39.77547616583561 23.202746695237806 3 18.778647510195803 25.61276909529736 30.425716450171397 25.182866944335437 4 13.058011822127591 17.839000345866822 37.801165648601106 31.301822183404475 5 13.184050660396773 37.794079069728085 35.80107598609403 13.220794283781116 6 30.927388539527247 37.62475554817291 18.11669944508999 13.331156467209867 7 26.98755830222873 32.266324407989856 22.694370289838165 18.051746999943248 8 24.85127913876324 36.71006862610451 20.9587683785971 17.47988385653515 9 25.4703923101412 16.390602808870277 20.852766658688264 37.286238222300256 10-11 24.4679370475249 26.606665716745546 28.784887410401605 20.140509825327943 12-13 25.00652981650059 23.943036198040247 29.003947813537284 22.04648617192188 14-15 22.037981393987526 25.5577097360653 26.212582651538263 26.191726218408913 16-17 22.007684796069224 28.831911753667526 26.969186006954025 22.19121744330922 18-19 22.066441932208374 28.029118314822487 28.454663936186993 21.44977581678215 20-21 22.599103293812288 27.21876839767979 28.437857617314865 21.74427069119306 22-23 22.33699808051687 27.257051190442578 28.290262613643367 22.11568811539718 24-25 22.238350695218422 27.386919887655477 28.333823726093353 22.040905691032748 26-27 22.23082452534842 27.58375912000662 28.25747010822305 21.927946246421914 28-29 22.165772958962176 27.616607644660867 28.24017648086148 21.97744291551548 30-31 22.44406277999121 27.432890031747892 28.189867826998498 21.9331793612624 32-33 22.183667053518715 27.56752787071231 28.192838992371005 22.05596608339797 34-35 22.298616517698424 27.472354127136146 28.227477698103108 22.00155165706232 36-37 22.19935970057487 27.590764862023125 28.190792166266316 22.019083271135685 38-39 22.11409565407564 27.547124244692377 28.289930158852773 22.048849942379213 40-41 22.3256651771859 27.386357819286932 28.217257776487454 22.070719227039714 42-43 22.292282251841154 27.465801590501428 28.055665239068905 22.186250918588513 44-45 22.244044326078143 27.562509609858317 27.95253049660211 22.240915567461425 46-47 22.368120417628155 27.4993752414181 27.699718151019216 22.432786189934525 48-49 22.233276914083774 27.629892923381007 27.715642597309596 22.421187565225623 50-51 22.222428022653006 27.713536739710758 27.73892697127508 22.325108266361156 52-53 22.40474560497092 27.617075512678426 27.67261268570967 22.305566196640985 54-55 22.294036068193797 27.543417685946313 27.665389556616294 22.497156689243596 56-57 22.346490572704422 27.67595012159802 27.56824682825792 22.40931247743964 58-59 22.229642523222324 27.782892318335286 27.651400715231368 22.336064443211022 60-61 22.395000518798454 27.77141148292325 27.54713274099569 22.286455257282608 62-63 22.294514186027182 27.891651695611504 27.53060566696265 22.283228451398667 64-65 22.268067884939338 27.842897572539055 27.475408908302835 22.413625634218775 66-67 22.327587820860025 27.86373699886396 27.329098951804365 22.47957622847165 68-69 22.279828138582708 27.86115372085371 27.403250191129935 22.45576794943365 70-71 22.26403396009606 27.682583050539204 27.456041185296638 22.5973418040681 72-73 22.32044592114521 27.70297220235346 27.349389845175313 22.627192031326018 74-75 22.201791993660354 27.81093110778382 27.371486082491188 22.61579081606464 76-77 22.432353025372375 27.7047032494267 27.29410738317703 22.568836342023893 78-79 22.405179346297764 27.711820549536405 27.241540119670855 22.641459984494976 80-81 22.340823742262085 27.798560272584595 27.229461553209028 22.631154431944292 82-83 22.382791888070756 27.758241340761806 27.301765547304214 22.557201223863224 84-85 22.440929241130732 27.781317773681803 27.277319300430296 22.50043368475717 86-87 22.358616168938894 27.801374844489196 27.325390474847065 22.514618511724844 88-89 22.357122233593838 27.84525140236868 27.302114108385723 22.495512255651757 90-91 22.371083821184357 27.871569015484127 27.336084910092996 22.42126225323852 92-93 22.413592366198596 27.811556826719396 27.36518339093229 22.409667416149716 94-95 22.282871003054897 27.86111747267524 27.42412368572809 22.431887838541773 96-97 22.231653557042844 27.81740731067647 27.516137743260188 22.4348013890205 98-99 22.412870002450525 28.422321756997686 27.61470227376938 21.55010596678241 100-101 23.266195836702874 31.069612531687774 24.63451940029662 21.029672231312734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6553.0 1 5432.0 2 6261.5 3 8730.5 4 11146.5 5 17101.5 6 22800.0 7 27358.5 8 31061.0 9 31567.5 10 28819.5 11 25403.5 12 26540.0 13 34412.5 14 54075.5 15 81180.5 16 102922.5 17 115883.5 18 120836.5 19 118736.0 20 113068.0 21 107245.5 22 105672.0 23 114333.0 24 134638.0 25 166900.0 26 209808.5 27 257672.0 28 314340.5 29 378376.5 30 439649.5 31 503202.5 32 569472.5 33 630314.5 34 687691.5 35 740669.0 36 797539.0 37 851588.0 38 898333.5 39 942636.0 40 984882.0 41 1028808.5 42 1061490.0 43 1088929.0 44 1117740.5 45 1139990.0 46 1159893.0 47 1176420.5 48 1179690.5 49 1171781.0 50 1157504.0 51 1130501.5 52 1084666.0 53 1027372.0 54 966807.0 55 899634.0 56 826235.0 57 747837.5 58 663837.0 59 572590.5 60 478756.0 61 393161.5 62 314549.0 63 244022.5 64 183310.0 65 136104.5 66 102367.0 67 78472.5 68 60356.5 69 44234.0 70 32406.0 71 24064.5 72 17396.0 73 12317.0 74 8647.5 75 5963.5 76 4159.0 77 2862.5 78 1978.0 79 1421.0 80 1043.5 81 782.0 82 615.5 83 446.0 84 302.5 85 208.5 86 154.5 87 126.5 88 93.5 89 63.5 90 40.0 91 26.5 92 20.5 93 14.0 94 11.5 95 10.5 96 9.0 97 8.5 98 4.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.573147292900254E-4 3 2.556641399967859E-4 4 1.4403613520945682E-5 5 1.4403613520945682E-5 6 0.0 7 3.6009033802364205E-6 8 0.0011774954053373093 9 0.0 10-11 2.9527407717938646E-4 12-13 4.3390885731848865E-4 14-15 3.6009033802364205E-6 16-17 1.8004516901182103E-6 18-19 3.906980167556516E-4 20-21 1.800549722234596E-6 22-23 0.0 24-25 1.4950427265198677E-4 26-27 0.0 28-29 4.904826794967799E-4 30-31 3.5385239098060584E-4 32-33 0.0010256056468146615 34-35 0.0011550978539242945 36-37 3.639593875189518E-5 38-39 0.0016293789421918295 40-41 3.290136113114806E-4 42-43 1.164670249315599E-4 44-45 1.6192835150647157E-4 46-47 4.501748619843592E-5 48-49 2.2680593660002935E-5 50-51 2.4746808266126873E-5 52-53 1.916065633601997E-5 54-55 3.2973078985043894E-4 56-57 5.437078909161188E-4 58-59 4.949741246896165E-4 60-61 4.8526159920208786E-4 62-63 1.0543685962401097E-4 64-65 5.017154151760284E-5 66-67 1.4588531679685443E-4 68-69 1.227813914160255E-4 70-71 9.300163713881911E-5 72-73 0.0 74-75 1.0540220448289068E-5 76-77 7.15660073733435E-4 78-79 2.7972638284135987E-5 80-81 1.762464825771431E-4 82-83 1.1005408806255194E-5 84-85 8.907516683667405E-6 86-87 0.0 88-89 2.5142699103034212E-5 90-91 6.496787129938944E-5 92-93 4.717485814048409E-5 94-95 2.8602920627400014E-4 96-97 5.17272594035847E-5 98-99 2.588216981721261E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 976.0 20-21 2901.0 22-23 5651.0 24-25 11829.0 26-27 16107.0 28-29 26884.0 30-31 49554.0 32-33 63888.0 34-35 87397.0 36-37 127035.0 38-39 139636.0 40-41 151460.0 42-43 173957.0 44-45 204371.0 46-47 205415.0 48-49 192533.0 50-51 177542.0 52-53 159529.0 54-55 178256.0 56-57 187107.0 58-59 208101.0 60-61 215602.0 62-63 214791.0 64-65 229764.0 66-67 246994.0 68-69 240490.0 70-71 238694.0 72-73 235047.0 74-75 249081.0 76-77 230204.0 78-79 254707.0 80-81 264055.0 82-83 261642.0 84-85 271918.0 86-87 294510.0 88-89 319428.0 90-91 344996.0 92-93 380029.0 94-95 459614.0 96-97 725021.0 98-99 2594476.0 100-101 1.7129617E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.98946828959157 #Duplication Level Percentage of deduplicated Percentage of total 1 88.1695229312044 71.40802781545194 2 7.710972093903383 12.490150597622272 3 2.090775899400034 5.07992485215304 4 0.8438757142618684 2.733801816022721 5 0.41832537036627715 1.6939974659005628 6 0.2319563968311144 1.1271615147432876 7 0.13858946796746602 0.785700112485572 8 0.09305264609699133 0.6029027464267893 9 0.06460858060012274 0.4709353130774247 >10 0.2298658405536991 2.9531861384225397 >50 0.006451947631122889 0.3528629296308176 >100 0.0019430902881275144 0.25496670600550797 >500 4.0064010035286066E-5 0.024691791718781907 >1k 1.9956885420426315E-5 0.021690200338689528 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.60090338023642E-6 2.160542028141852E-5 2 0.0 1.440361352094568E-5 0.0 3.60090338023642E-6 2.160542028141852E-5 3 0.0 1.440361352094568E-5 0.0 1.440361352094568E-5 2.160542028141852E-5 4 0.0 3.60090338023642E-5 0.0 2.160542028141852E-5 2.520632366165494E-5 5 0.0 3.960993718260062E-5 0.0 2.520632366165494E-5 2.520632366165494E-5 6 0.0 3.960993718260062E-5 0.0 2.520632366165494E-5 3.960993718260062E-5 7 0.0 3.960993718260062E-5 0.0 3.60090338023642E-5 4.321084056283704E-5 8 0.0 4.321084056283704E-5 0.0 3.960993718260062E-5 5.40135507035463E-5 9 0.0 1.0082529464661976E-4 0.0 6.481626084425556E-5 6.481626084425556E-5 10-11 7.20180676047284E-6 1.0082529464661976E-4 0.0 7.021761591461019E-5 6.841716422449199E-5 12-13 7.20180676047284E-6 1.0262574633673798E-4 0.0 1.062266497169744E-4 7.20180676047284E-5 14-15 7.20180676047284E-6 1.4043523182922038E-4 0.0 1.1162800478732903E-4 1.2063026323792007E-4 16-17 1.080271014070926E-5 1.440361352094568E-4 0.0 1.2603161830827472E-4 1.4763703858969323E-4 18-19 1.440361352094568E-5 1.6384110380075713E-4 0.0 1.5303839366004784E-4 1.5843974873040249E-4 20-21 2.160542028141852E-5 1.8724697577229385E-4 0.0 2.14253751124067E-4 1.6384110380075713E-4 22-23 2.340587197153673E-5 2.0525149267347595E-4 0.0 3.222808525311596E-4 1.8544652408217563E-4 24-25 3.420858211224599E-5 2.322582680252491E-4 0.0 4.1770479210742476E-4 2.160542028141852E-4 26-27 3.960993718260062E-5 2.4126052647584014E-4 0.0 6.481626084425556E-4 2.1965510619442163E-4 28-29 3.960993718260062E-5 2.466618815461948E-4 0.0 0.0019732950523695583 2.2325600957465803E-4 30-31 4.321084056283704E-5 2.862718187287954E-4 0.0 0.005874873864855719 2.2685691295489446E-4 32-33 5.041264732330988E-5 2.9527407717938646E-4 0.0 0.013330544313635229 2.4126052647584014E-4 34-35 5.40135507035463E-5 3.6729214478411484E-4 0.0 0.023470688232380986 2.4846233323631297E-4 36-37 5.761445408378272E-5 4.28507502248134E-4 0.0 0.038463049455995324 2.5026278492643115E-4 38-39 5.761445408378272E-5 4.4831247083943436E-4 0.0 0.06335249362018947 2.736686568979679E-4 40-41 5.761445408378272E-5 5.041264732330989E-4 0.0 0.1120205032557748 2.7726956027820433E-4 42-43 5.761445408378272E-5 5.185300867540445E-4 0.0 0.1337915650926842 2.844713670386772E-4 44-45 6.661671253437378E-5 5.851467992884184E-4 0.0 0.16532647644510465 2.9527407717938646E-4 46-47 7.741942267508304E-5 6.481626084425556E-4 0.0 0.20137872108803168 3.078772390102139E-4 48-49 7.921987436520124E-5 6.589653185832649E-4 0.0 0.22910927801923237 3.2768220760151425E-4 50-51 7.921987436520124E-5 7.255820311176386E-4 0.0 0.2558117770353755 3.312831109817507E-4 52-53 7.921987436520124E-5 7.345842895682297E-4 0.0 0.2945773023753107 3.5468898295328737E-4 54-55 7.921987436520124E-5 7.45386999708939E-4 0.0 0.37610535580724347 3.798953066149423E-4 56-57 7.921987436520124E-5 7.633915166101211E-4 0.0 0.4644967310819069 3.8709711337541516E-4 58-59 7.921987436520124E-5 7.70593323370594E-4 0.0 0.5511398677654655 3.960993718260062E-4 60-61 7.921987436520124E-5 7.759946784409485E-4 0.0 0.5937961692077461 4.0330117858647905E-4 62-63 7.921987436520124E-5 7.939991953421306E-4 0.0 0.6165196699887281 4.0330117858647905E-4 64-65 7.921987436520124E-5 8.588154561863862E-4 0.0 0.6304857737489751 4.0510163027659724E-4 66-67 7.921987436520124E-5 8.786204247776865E-4 0.0 0.6359771514038356 4.105029853469519E-4 68-69 8.282077774543767E-5 8.984253933689869E-4 0.0 0.6409698039405334 4.1950524379754295E-4 70-71 8.282077774543767E-5 9.038267484393415E-4 0.0 0.6459714587356817 4.411106640789615E-4 72-73 8.462122943555587E-5 9.09228103509696E-4 0.0 0.6498766384515482 4.861219563319167E-4 74-75 8.642168112567408E-5 9.272326204108781E-4 0.0 0.6530652383947475 4.8792240802203495E-4 76-77 8.642168112567408E-5 9.560398474527695E-4 0.0 0.6558415349009098 4.969246664726259E-4 78-79 8.642168112567408E-5 9.614412025231242E-4 0.0 0.6586142305036918 5.041264732330988E-4 80-81 8.82221328157923E-5 9.614412025231242E-4 0.0 0.6598943516553659 5.185300867540445E-4 82-83 9.362348788614694E-5 9.668425575934789E-4 0.0 0.6604182830971903 5.437364104156994E-4 84-85 9.722439126638335E-5 9.758448160440699E-4 0.0 0.6609296113771839 5.491377654860541E-4 86-87 9.902484295650155E-5 9.938493329452519E-4 0.0 0.6612482913263348 5.509382171761723E-4 88-89 1.0082529464661976E-4 0.001055064690409271 0.0 0.6613707220412628 5.581400239366451E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27095 0.0 46.752056 1 GTATCAA 47190 0.0 35.131184 1 TCAACGC 54670 0.0 29.576147 4 ATCAACG 55985 0.0 28.835392 3 CAACGCA 56965 0.0 28.384945 5 AACGCAG 59155 0.0 27.334442 6 TATCAAC 59725 0.0 27.332657 2 ACGCAGA 70450 0.0 22.95812 7 CGCAGAG 71775 0.0 22.480293 8 GTACATG 71500 0.0 22.30707 1 TACATGG 71450 0.0 21.738134 2 ACATGGG 73615 0.0 20.554638 3 GTGGTAT 15300 0.0 19.05865 1 CATGGGG 55110 0.0 18.570023 4 GCAGAGT 87210 0.0 18.368061 9 GAGTACT 49470 0.0 18.036001 12-13 AGAGTAC 75785 0.0 17.326324 10-11 TGGTATC 14950 0.0 16.912027 2 CAGAGTA 83935 0.0 16.903786 10-11 GAGTACA 52275 0.0 15.770401 1 >>END_MODULE