##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139738_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10638350 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70431815084106 31.0 31.0 34.0 30.0 34.0 2 31.902129841563777 33.0 31.0 34.0 30.0 34.0 3 31.96486222017512 33.0 31.0 34.0 30.0 34.0 4 35.68282835214107 37.0 35.0 37.0 33.0 37.0 5 35.429285462501234 37.0 35.0 37.0 33.0 37.0 6 35.45658574872983 37.0 35.0 37.0 33.0 37.0 7 35.41333750064625 37.0 35.0 37.0 33.0 37.0 8 35.405646552331895 37.0 35.0 37.0 33.0 37.0 9 37.179300925425466 39.0 37.0 39.0 33.0 39.0 10-11 37.018321779223285 39.0 37.0 39.0 33.0 39.0 12-13 37.0229567555119 39.0 37.0 39.0 33.0 39.0 14-15 38.10425615814482 40.0 37.5 41.0 33.0 41.0 16-17 38.03111304854606 40.0 37.0 41.0 33.0 41.0 18-19 38.09950081544601 40.0 37.0 41.0 33.0 41.0 20-21 38.14509267743341 40.0 37.0 41.0 33.0 41.0 22-23 38.12645171123596 40.0 37.0 41.0 33.0 41.0 24-25 38.07789680858009 40.0 37.0 41.0 33.0 41.0 26-27 37.95109517176343 40.0 37.0 41.0 33.0 41.0 28-29 37.77490396557049 39.5 37.0 41.0 33.0 41.0 30-31 37.67256179360035 39.0 37.0 41.0 33.0 41.0 32-33 37.57241659996149 39.0 37.0 41.0 32.0 41.0 34-35 37.50243875424958 39.0 36.5 40.0 32.0 41.0 36-37 37.46152733800473 39.0 36.0 40.0 32.0 41.0 38-39 37.37810286205427 39.0 36.0 40.0 32.0 41.0 40-41 37.36941168768462 39.0 36.0 40.0 32.0 41.0 42-43 37.31913076630594 39.0 36.0 40.0 31.5 41.0 44-45 37.25267753389927 39.0 36.0 40.0 31.0 41.0 46-47 37.206472835138584 39.0 36.0 40.0 31.0 41.0 48-49 37.22636638511523 39.0 36.0 40.0 31.0 41.0 50-51 37.12573566112038 39.0 36.0 40.0 31.0 41.0 52-53 36.942098576933674 39.0 35.0 40.0 31.0 41.0 54-55 36.75068487000188 39.0 35.0 40.0 30.5 41.0 56-57 36.634260948127036 38.5 35.0 40.0 30.0 41.0 58-59 36.44633041070562 38.0 35.0 40.0 30.0 41.0 60-61 36.27815305901093 38.0 34.5 40.0 30.0 41.0 62-63 36.13942712825934 38.0 34.0 40.0 29.5 41.0 64-65 35.9007239261105 37.5 34.0 40.0 29.0 41.0 66-67 35.77465052955846 37.0 34.0 40.0 29.0 41.0 68-69 35.509246868304075 37.0 34.0 39.0 29.0 41.0 70-71 35.19476307000629 36.0 34.0 39.0 29.0 40.5 72-73 34.89610078431726 36.0 33.5 39.0 29.0 40.0 74-75 34.551269802569735 35.0 33.0 38.0 28.5 40.0 76-77 32.38997961174794 33.5 30.0 35.5 25.5 38.5 78-79 33.686497410897175 35.0 32.0 37.0 28.0 39.0 80-81 33.682013028713584 35.0 33.0 36.0 28.0 39.0 82-83 33.497884247532745 35.0 33.0 36.0 28.0 37.5 84-85 33.312796832064905 35.0 32.5 36.0 28.5 37.0 86-87 33.07895107786223 35.0 32.0 35.0 28.0 37.0 88-89 32.92810715752112 34.0 32.0 35.0 28.0 36.0 90-91 32.765096226862774 34.0 32.0 35.0 27.0 36.0 92-93 32.74054625981773 34.0 32.0 35.0 27.5 36.0 94-95 32.706470786594316 34.0 32.0 35.0 28.0 35.5 96-97 32.73393676852338 34.0 32.0 35.0 29.0 35.0 98-99 32.90921691421718 34.0 32.0 35.0 29.0 35.0 100-101 31.748644528386695 33.0 30.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 5.0 19 18.0 20 83.0 21 465.0 22 1953.0 23 6620.0 24 16756.0 25 35121.0 26 63041.0 27 100720.0 28 146269.0 29 199206.0 30 259331.0 31 329993.0 32 421684.0 33 547926.0 34 737631.0 35 1033718.0 36 1555260.0 37 2245338.0 38 2146959.0 39 782160.0 40 8091.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.65097501022245 21.410068290665375 13.719796772995812 24.21915992611636 2 14.993078304227305 22.946528337404633 39.72425453002828 22.336138828339784 3 17.4976666913886 27.471471783110257 31.578677737580353 23.452183787920788 4 12.654763191660361 18.90129578365066 39.294317257845435 29.14962376684354 5 12.616524179031524 38.31659984866074 36.39025788773635 12.676618084571386 6 28.819779383081023 38.964783072562945 19.24399930440341 12.971438239952624 7 25.081925298566038 33.2251617967072 24.723298255838547 16.96961464888822 8 24.008977434119906 36.246578260347654 22.506951110001484 17.23749319553095 9 25.60102835496106 16.094206338388943 21.874849013239835 36.429916293410166 10-11 23.487663388782124 26.719162137949574 30.283152467432693 19.510022005835605 12-13 24.400924470319904 24.751201036856614 29.82792940381121 21.019945089012275 14-15 21.72379645339738 26.060897601601752 27.305578402665827 24.90972754233504 16-17 21.30824328960788 28.915080816104 28.05458083255392 21.722095061734198 18-19 21.328406485616604 28.349366581722098 29.476138597202002 20.8460883354593 20-21 22.097084326672466 27.73125548431073 29.17671873932896 20.99494144968784 22-23 21.84377254666437 27.625543493896455 29.044155876390548 21.486528083048633 24-25 21.624028124321086 27.762868447510016 29.096389564733244 21.516713863435655 26-27 21.531350744608208 27.9509543858926 29.04271487874077 21.474979990758413 28-29 21.547388761395048 28.024071686763524 28.954839243107998 21.473700308733427 30-31 21.80178619335553 27.87472187157839 28.869647593749765 21.453844341316312 32-33 21.54423592798106 28.059080434864274 28.85357516945894 21.543108467695728 34-35 21.645620877417855 28.083199749410166 28.850497738151436 21.42068163502054 36-37 21.690973627939854 28.000735194655217 28.79288871497325 21.51540246243168 38-39 21.51201043916373 28.090734271681168 28.833046119812707 21.564209169342398 40-41 21.726240640024567 27.948772040527896 28.72267594947569 21.602311369971844 42-43 21.68826702931758 28.04253047119023 28.49519304148404 21.774009458008152 44-45 21.682791808301314 28.134226758408083 28.339483644170233 21.843497789120374 46-47 21.754496402324605 28.079494101050635 28.15286322560091 22.013146271023853 48-49 21.700615819911683 28.204498833085744 28.118951508322347 21.975933838680223 50-51 21.7151571156982 28.310974574798703 28.005285895398234 21.968582414104862 52-53 21.850768187379995 28.15483655221747 27.831113876127905 22.16328138427463 54-55 21.829613199840004 28.042804857188745 27.90020143257384 22.227380510397413 56-57 21.788664972049418 28.12894000719196 27.915903514607905 22.166491506150717 58-59 21.78765322364942 28.11433445424066 27.901018631567275 22.196993690542648 60-61 21.75982327433325 27.822465888056946 28.052374567152043 22.365336270457753 62-63 21.99617152326694 27.95662756589628 28.01677683859684 22.03042407223994 64-65 21.570343852254613 27.959000485272405 27.986201511929586 22.48445415054339 66-67 21.70358480687863 28.081101544067856 27.737425254015708 22.47788839503781 68-69 21.686902300479417 28.469026385625533 27.733871898961297 22.110199414933753 70-71 21.683078949258345 28.210442049412855 27.789444085221405 22.3170349161074 72-73 21.73112097778329 28.129229753891604 27.33379333957257 22.805855928752532 74-75 21.699748198920148 28.155285972241405 27.313853598439497 22.831112230398958 76-77 21.904475620978186 27.676285582545056 27.638852255109676 22.780386541367083 78-79 21.945909829497193 27.64869200978573 27.523649595943784 22.88174856477329 80-81 22.398333310489452 27.643573788017928 27.092216176208556 22.865876725284064 82-83 22.409096247168485 28.04101510156471 27.177452296446386 22.37243635482042 84-85 22.009767970636567 27.580259691354332 27.165565900465477 23.244406437543617 86-87 21.953929556341194 28.060222718035348 27.213536390799952 22.772311334823502 88-89 22.482240028935742 27.53615171383796 27.236105064533533 22.745503192692766 90-91 22.589516525289653 27.900921919928408 27.26903740559904 22.240524149182907 92-93 22.11252575999264 27.776203359093586 27.31091669184511 22.80035418906866 94-95 22.576226691651215 27.252871618391193 27.467280713440413 22.703620976517183 96-97 22.450304680757018 27.752051226885243 27.568489337638518 22.229154754719225 98-99 22.699783926937243 27.954883011819454 27.856987559356906 21.488345501886403 100-101 26.41266572731303 35.18129805200268 28.578862224176284 9.827173996508009 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3678.0 1 3127.5 2 3642.5 3 4942.5 4 6418.5 5 10036.0 6 13292.5 7 15675.5 8 17202.0 9 17043.0 10 15877.5 11 14677.0 12 15957.0 13 20748.0 14 30749.5 15 44073.5 16 55037.5 17 61579.0 18 64041.5 19 63601.0 20 62073.0 21 61310.5 22 63168.5 23 69709.5 24 82317.5 25 100613.0 26 123871.0 27 149668.0 28 177881.5 29 207178.0 30 233710.5 31 259102.5 32 284683.0 33 308696.5 34 330512.5 35 350544.5 36 372715.0 37 392663.5 38 408465.0 39 423022.5 40 436986.0 41 449452.0 42 456922.5 43 463435.0 44 468514.5 45 470882.0 46 470467.0 47 467088.0 48 461720.0 49 452649.0 50 440629.0 51 424835.0 52 404322.5 53 382580.5 54 359537.5 55 334056.5 56 307308.5 57 278735.0 58 248263.0 59 215662.0 60 182097.0 61 149163.0 62 118701.5 63 92615.5 64 70599.5 65 53725.5 66 41273.0 67 31910.0 68 24546.5 69 18089.5 70 13106.5 71 9501.5 72 6716.5 73 4745.0 74 3343.5 75 2344.0 76 1652.5 77 1169.5 78 823.0 79 565.5 80 377.5 81 261.0 82 200.5 83 141.5 84 96.5 85 72.0 86 53.5 87 37.0 88 23.5 89 16.0 90 11.0 91 7.5 92 5.0 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.733971903537673E-4 3 2.1619894062519093E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.001137394426767309 9 0.0 10-11 3.3369836487801214E-4 12-13 3.947980654894791E-4 14-15 0.0 16-17 0.0 18-19 3.759981576090277E-4 20-21 0.0 22-23 0.0 24-25 1.927994484619095E-4 26-27 0.0 28-29 4.6614203244141366E-4 30-31 3.963305453366757E-4 32-33 9.09539520510661E-4 34-35 0.001176531334125563 36-37 4.800171730943847E-5 38-39 0.0016013112507012408 40-41 3.484869701948911E-4 42-43 1.3418980223106947E-4 44-45 1.2606352229952773E-4 46-47 5.637861788638304E-5 48-49 1.0416086186863546E-5 50-51 2.1157117674883544E-5 52-53 5.365954329074876E-6 54-55 3.53637397296219E-4 56-57 5.742934754518254E-4 58-59 4.711164928069205E-4 60-61 5.887801488696638E-4 62-63 1.0365589146398917E-4 64-65 5.271514015140022E-5 66-67 1.4912341083654775E-4 68-69 1.0337063675582566E-4 70-71 1.054307830474495E-4 72-73 0.0 74-75 6.447510206892221E-6 76-77 8.221977609252818E-4 78-79 3.3548608041413475E-5 80-81 2.3300703667544466E-4 82-83 7.002844275230827E-6 84-85 2.8614857749819157E-5 86-87 7.313836352180236E-6 88-89 5.2398100104773736E-5 90-91 1.150902411071497E-4 92-93 7.87646303331728E-5 94-95 3.24136815556752E-4 96-97 8.371499698081863E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 376.0 20-21 1238.0 22-23 2414.0 24-25 5645.0 26-27 7352.0 28-29 15085.0 30-31 39295.0 32-33 53835.0 34-35 71562.0 36-37 106271.0 38-39 117956.0 40-41 124125.0 42-43 138522.0 44-45 158827.0 46-47 157625.0 48-49 149144.0 50-51 140626.0 52-53 124762.0 54-55 134810.0 56-57 138201.0 58-59 80440.0 60-61 151343.0 62-63 145321.0 64-65 151648.0 66-67 159304.0 68-69 160563.0 70-71 157895.0 72-73 151039.0 74-75 155183.0 76-77 147529.0 78-79 155144.0 80-81 157538.0 82-83 150589.0 84-85 152242.0 86-87 155568.0 88-89 161271.0 90-91 167647.0 92-93 173844.0 94-95 189331.0 96-97 251498.0 98-99 849475.0 100-101 4926267.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.66134863414163 #Duplication Level Percentage of deduplicated Percentage of total 1 92.22343981243584 81.76654549450153 2 5.603976170543434 9.937121699879468 3 1.2501059641149306 3.3250824214204084 4 0.42553956704477863 1.5091564764551524 5 0.1913287878723427 0.8481734182648754 6 0.1014592040045878 0.5397305915035956 7 0.06064973833122217 0.37641013163277665 8 0.036793628014933084 0.26097381447575224 9 0.023968840705323857 0.19125987679178313 >10 0.08094583001744414 1.0923034143627324 >50 0.0014573414132053538 0.08465055238726898 >100 2.592288088624338E-4 0.030067804636678366 >500 7.588669311636076E-5 0.03852430368792188 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.399953940225694E-6 0.0 2 0.0 1.8799907880451387E-5 0.0 9.399953940225694E-6 0.0 3 0.0 1.8799907880451387E-5 0.0 9.399953940225694E-6 0.0 4 0.0 3.7599815760902774E-5 0.0 2.8199861820677077E-5 9.399953940225694E-6 5 2.8199861820677077E-5 4.6999769701128465E-5 0.0 3.7599815760902774E-5 9.399953940225694E-6 6 2.8199861820677077E-5 4.6999769701128465E-5 0.0 4.6999769701128465E-5 1.8799907880451387E-5 7 2.8199861820677077E-5 4.6999769701128465E-5 0.0 4.6999769701128465E-5 1.8799907880451387E-5 8 2.8199861820677077E-5 5.6399723641354155E-5 0.0 4.6999769701128465E-5 1.8799907880451387E-5 9 2.8199861820677077E-5 1.22199401222934E-4 0.0 6.579967758157985E-5 2.8199861820677077E-5 10-11 3.7599815760902774E-5 1.22199401222934E-4 0.0 7.98996084919184E-5 2.8199861820677077E-5 12-13 4.229979273101562E-5 1.22199401222934E-4 0.0 8.459958546203124E-5 2.8199861820677077E-5 14-15 5.169974667124131E-5 1.8799907880451386E-4 0.0 1.0339949334248262E-4 3.7599815760902774E-5 16-17 5.6399723641354155E-5 1.9739903274473955E-4 0.0 1.5509924001372392E-4 5.6399723641354155E-5 18-19 5.6399723641354155E-5 2.349988485056423E-4 0.0 2.9139857214699645E-4 6.579967758157985E-5 20-21 6.1099700611467E-5 2.6789868729643225E-4 0.0 5.592972594434287E-4 7.519963152180555E-5 22-23 6.579967758157985E-5 2.960985491171094E-4 0.0 0.0013629933213327255 7.98996084919184E-5 24-25 7.98996084919184E-5 3.1489845699756076E-4 0.0 0.0029421855832906423 8.459958546203124E-5 26-27 8.929956243214408E-5 3.2899838790789927E-4 0.0 0.007980560895251614 8.459958546203124E-5 28-29 9.399953940225693E-5 3.2899838790789927E-4 0.0 0.03630262211715163 8.459958546203124E-5 30-31 1.1279944728270831E-4 3.4779829578835065E-4 0.0 0.055290529076407524 8.459958546203124E-5 32-33 1.503992630436111E-4 3.4779829578835065E-4 0.0 0.06992625736133892 9.399953940225693E-5 34-35 1.7859912486428817E-4 3.900980885193663E-4 0.0 0.08993875930007944 1.0339949334248262E-4 36-37 1.9739903274473955E-4 4.2299792731015617E-4 0.0 0.11604243139208618 1.0339949334248262E-4 38-39 2.020990097148524E-4 4.4179783519060755E-4 0.0 0.16422189531271297 1.0339949334248262E-4 40-41 2.1619894062519093E-4 4.7939765095151036E-4 0.0 0.26740988969154056 1.0339949334248262E-4 42-43 2.1619894062519093E-4 4.981975588319617E-4 0.0 0.3095733830904228 1.1279944728270831E-4 44-45 2.3029887153552946E-4 5.404973515629773E-4 0.0 0.3711430813989012 1.22199401222934E-4 46-47 2.4909877941598087E-4 5.780971673238801E-4 0.0 0.4397298453237579 1.22199401222934E-4 48-49 2.631987103263194E-4 5.874971212641058E-4 0.0 0.49396757955886017 1.4099930910338538E-4 50-51 2.6789868729643225E-4 6.532967988456856E-4 0.0 0.5481207142085004 1.4099930910338538E-4 52-53 2.7259866426654507E-4 6.626967527859114E-4 0.0 0.6235318446939611 1.503992630436111E-4 54-55 2.7259866426654507E-4 7.002965685468141E-4 0.0 0.7759191979959298 1.6449919395394963E-4 56-57 2.7259866426654507E-4 7.237964533973783E-4 0.0 0.9370767083241291 1.7389914789417532E-4 58-59 2.772986412366579E-4 7.284964303674911E-4 0.0 1.083424591219503 1.8329910183440101E-4 60-61 2.913985721469965E-4 7.472963382479426E-4 0.0 1.7554695981989688 1.8799907880451386E-4 62-63 2.913985721469965E-4 7.519963152180554E-4 0.0 1.772102816696198 1.8799907880451386E-4 64-65 2.913985721469965E-4 7.989960849191839E-4 0.0 1.789342332222572 1.8799907880451386E-4 66-67 3.007985260872222E-4 8.224959697697481E-4 0.0 1.8004107779871878 1.8799907880451386E-4 68-69 3.007985260872222E-4 8.27195946739861E-4 0.0 1.8114604238439231 1.926990557746267E-4 70-71 3.05498503057335E-4 8.27195946739861E-4 0.0 1.821283375711459 1.9739903274473955E-4 72-73 3.101984800274479E-4 8.27195946739861E-4 0.0 1.829028937758205 2.349988485056423E-4 74-75 3.101984800274479E-4 8.318959237099738E-4 0.0 1.83590500406548 2.44398802445868E-4 76-77 3.101984800274479E-4 8.553958085605381E-4 0.0 1.841483876729004 2.44398802445868E-4 78-79 3.195984339676736E-4 8.694957394708765E-4 0.0 1.8465128520870246 2.44398802445868E-4 80-81 3.195984339676736E-4 8.741957164409895E-4 0.0 1.8490414396969455 2.537987563860937E-4 82-83 3.195984339676736E-4 8.788956934111023E-4 0.0 1.8499203353903564 2.631987103263194E-4 84-85 3.242984109377864E-4 8.976956012915537E-4 0.0 1.8510436298862136 2.631987103263194E-4 86-87 3.2899838790789927E-4 9.117955322018922E-4 0.0 1.8516734268002086 2.631987103263194E-4 88-89 3.2899838790789927E-4 9.305954400823436E-4 0.0 1.8519225255796246 2.631987103263194E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11205 0.0 46.63331 1 GTATCAA 19690 0.0 33.136845 1 GACCGAG 16020 0.0 27.80676 90-91 ACCGAGG 16370 0.0 27.561277 92-93 AGACCGA 15795 0.0 27.1765 90-91 TCAACGC 23455 0.0 27.07494 4 ATCAACG 23750 0.0 26.738768 3 GAGACCG 16505 0.0 26.710274 88-89 CAACGCA 24350 0.0 26.079782 5 ACGAGAC 16640 0.0 26.056349 86-87 CGAGACC 16770 0.0 25.474321 88-89 TATCAAC 25355 0.0 25.374407 2 AACGCAG 25110 0.0 25.338 6 CACGAGA 16920 0.0 24.507608 86-87 CCACGAG 17625 0.0 24.228666 84-85 GCCCACG 17725 0.0 23.790163 82-83 CCCACGA 17210 0.0 23.685907 84-85 ACGCAGA 29610 0.0 21.447104 7 CCGAGCC 19260 0.0 21.397558 78-79 CGAGCCC 18960 0.0 21.08611 80-81 >>END_MODULE