##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139735_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15717327 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37742206419705 34.0 31.0 34.0 31.0 34.0 2 32.5024631732864 34.0 31.0 34.0 31.0 34.0 3 32.57768779640457 34.0 31.0 34.0 31.0 34.0 4 36.11092573183723 37.0 35.0 37.0 35.0 37.0 5 36.02092245074496 37.0 35.0 37.0 35.0 37.0 6 36.04073097162132 37.0 35.0 37.0 35.0 37.0 7 35.959374326181546 37.0 35.0 37.0 35.0 37.0 8 35.9316080272428 37.0 35.0 37.0 35.0 37.0 9 37.62077444847969 39.0 37.0 39.0 35.0 39.0 10-11 37.51392727274809 39.0 37.0 39.0 35.0 39.0 12-13 37.48267781156427 39.0 37.0 39.0 35.0 39.0 14-15 38.72456983302568 40.0 38.0 41.0 34.0 41.0 16-17 38.77795365586019 40.0 38.0 41.0 35.0 41.0 18-19 38.76169774287956 40.0 38.0 41.0 34.5 41.0 20-21 38.73096245249833 40.0 38.0 41.0 34.0 41.0 22-23 38.6379328745995 40.0 38.0 41.0 34.0 41.0 24-25 38.563125941588005 40.0 38.0 41.0 34.0 41.0 26-27 38.4249402784291 40.0 38.0 41.0 34.0 41.0 28-29 38.29476881163996 40.0 38.0 41.0 34.0 41.0 30-31 38.1573667646764 40.0 38.0 41.0 33.5 41.0 32-33 38.36113127548485 40.0 38.0 41.0 34.0 41.0 34-35 38.33814792311813 40.0 38.0 41.0 34.0 41.0 36-37 38.23610562203292 40.0 38.0 41.0 33.5 41.0 38-39 38.11370100954433 40.0 38.0 41.0 33.0 41.0 40-41 38.07155530369199 40.0 38.0 41.0 33.0 41.0 42-43 37.96628644739631 40.0 37.0 41.0 33.0 41.0 44-45 37.997309974636146 40.0 37.5 41.0 33.0 41.0 46-47 38.121613551813 40.0 38.0 41.0 33.0 41.0 48-49 38.054599304346745 40.0 37.0 41.0 33.0 41.0 50-51 37.950229656183865 40.0 37.0 41.0 33.0 41.0 52-53 37.80876875637419 40.0 37.0 41.0 33.0 41.0 54-55 37.70101025724037 40.0 37.0 41.0 32.5 41.0 56-57 37.55275700024835 39.5 36.0 41.0 32.0 41.0 58-59 37.404409407287694 39.0 36.0 41.0 32.0 41.0 60-61 37.16710910787691 39.0 35.5 40.5 31.5 41.0 62-63 36.92630266902431 39.0 35.0 40.0 31.0 41.0 64-65 36.688621731900554 38.0 35.0 40.0 31.0 41.0 66-67 36.400545304795955 38.0 35.0 40.0 31.0 41.0 68-69 36.0811826923528 37.0 34.5 40.0 30.5 41.0 70-71 35.768191436149046 37.0 34.0 39.0 30.0 41.0 72-73 35.43401044685932 36.0 34.0 39.0 30.0 40.0 74-75 35.023281638673055 36.0 34.0 38.5 29.5 40.0 76-77 34.00647370090143 35.0 32.5 37.0 28.5 39.0 78-79 34.288187566505606 35.0 33.5 37.0 29.0 39.0 80-81 34.15444911374759 35.0 33.5 36.5 29.0 39.0 82-83 33.89531174399542 35.0 33.0 36.0 29.0 37.5 84-85 33.64339063397729 35.0 33.0 36.0 29.0 37.0 86-87 33.42609913091779 35.0 33.0 35.0 29.0 37.0 88-89 33.18897851614998 35.0 33.0 35.0 29.0 36.0 90-91 33.06544040164946 35.0 33.0 35.0 29.0 36.0 92-93 32.97768982910834 34.0 33.0 35.0 29.0 36.0 94-95 32.929058605293335 34.0 32.0 35.0 29.0 35.5 96-97 32.885465176764946 34.0 32.0 35.0 29.0 35.0 98-99 32.98353778594321 34.0 32.0 35.0 29.0 35.0 100-101 32.172058328280016 33.5 30.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 10.0 20 67.0 21 484.0 22 2314.0 23 8248.0 24 21809.0 25 46104.0 26 83989.0 27 131957.0 28 188177.0 29 250633.0 30 318411.0 31 394553.0 32 495158.0 33 635101.0 34 860871.0 35 1226694.0 36 1962959.0 37 3432374.0 38 4094819.0 39 1511245.0 40 51349.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.158409505636676 21.786242660727233 15.53227212235261 24.523075711283475 2 13.677758426822246 22.787698102782777 40.26585892739858 23.268684542996397 3 16.36326491372966 27.857143720614747 31.877877843868525 23.901713521787073 4 11.976311239182081 20.18740845692146 39.8357621496327 28.000518154263766 5 12.73318293880378 38.63395474306795 36.05235164987023 12.580510668258032 6 28.126716457575768 39.49039808104775 19.714153685292672 12.668731776083808 7 25.582301621643428 33.18479662604207 23.912482065175585 17.320419687138912 8 24.903732040441735 36.12973121956424 21.636535270914706 17.330001469079313 9 25.670637252759327 16.768201106969396 21.05186842520996 36.50929321506131 10-11 23.77194290097801 26.93200631379623 29.686899050964584 19.609151734261175 12-13 24.99060749960855 24.367833029114937 29.268052385752362 21.37350708552415 14-15 22.156319701165366 25.777156114036355 26.630377192449746 25.436146992348537 16-17 21.903116465429072 28.945090847202053 27.078259182144542 22.07353350522433 18-19 21.960478219298114 28.193062705140093 28.440528747034797 21.405930328527 20-21 22.84007973859748 27.303260701126636 28.16055783550448 21.696101724771403 22-23 22.436470960908018 27.404672237896776 28.03788178544252 22.120975015752684 24-25 22.250173270331185 27.592446540159543 28.101392533982082 22.055987655527186 26-27 22.279323697714034 27.625118243765424 27.978669211528146 22.1168888469924 28-29 22.140216630570915 27.47690977042872 28.041657167365365 22.341216431635004 30-31 22.444660640220906 27.31777988066295 28.020818116960992 22.216741362155147 32-33 22.265872680415875 27.542183910235806 28.001300354968055 22.19064305438026 34-35 22.35025323332975 27.640025711407983 28.06152184478713 21.948199210475135 36-37 22.37531661509863 27.521036502168727 27.870932092280796 22.232714790451844 38-39 22.249467531753332 27.510819187784364 28.035775327473324 22.20393795298898 40-41 22.478138055529065 27.358690098488665 27.973995009142516 22.189176836839756 42-43 22.387106914358494 27.4338235341873 27.877842501407734 22.30122705004647 44-45 22.38681419519909 27.52026503539493 27.79501556462483 22.297905204781152 46-47 22.51253601599293 27.456804557008173 27.49946315187193 22.531196275126966 48-49 22.34745973722589 27.54352780404195 27.64300243781181 22.466010020920347 50-51 22.36107684149505 27.619485917016682 27.597552622672172 22.421884618816097 52-53 22.49540745976562 27.56173480767721 27.573656129765904 22.369201602791264 54-55 22.38327539425127 27.522820390777824 27.60103823581738 22.492865979153525 56-57 22.482715949018274 27.66179338832544 27.459807396885726 22.395683265770554 58-59 22.349927947263108 27.735017466108285 27.622704587605888 22.29234999902271 60-61 22.475508433927434 27.790909119081814 27.45847254441297 22.275109902577782 62-63 22.36245922905734 27.93476427048503 27.416593211840436 22.2861832886172 64-65 22.327692311728608 27.829945542904966 27.44027516268478 22.402086982681645 66-67 22.414372424931063 27.802687465971097 27.35328279511083 22.42965731398701 68-69 22.376866352190287 27.755666775396463 27.411690736007703 22.455776136405543 70-71 22.36244352950943 27.536895585858268 27.490999622835865 22.609661261796433 72-73 22.351375532692042 27.61661258653823 27.42665344842153 22.6053584323482 74-75 22.255777945830513 27.69835111318856 27.42683154547956 22.61903939550137 76-77 22.354559425660952 27.644015507820885 27.404781313864135 22.596643752654025 78-79 22.327525343088077 27.676504486431902 27.357667946959257 22.638302223520764 80-81 22.334123668095486 27.727004490925683 27.336529252660053 22.602342588318784 82-83 22.327380058641026 27.67727860312923 27.452329621458 22.543011716771748 84-85 22.36787671008358 27.698024394731995 27.469548807158912 22.464550088025515 86-87 22.214355858070217 27.727565310071277 27.508833654915748 22.549245176942755 88-89 22.290114134589707 27.70021710424472 27.516940757616865 22.49272800354871 90-91 22.255338411092985 27.753763723849858 27.573614237242484 22.417283627814676 92-93 22.262086841090404 27.69171439140142 27.58072272526112 22.465476042247058 94-95 22.09146873192112 27.768370607225478 27.645375199007532 22.494785461845872 96-97 22.010375243786022 27.84855430432434 27.749568265804296 22.391502186085344 98-99 22.18588608905522 28.45650193315226 27.794458494484253 21.563153483308266 100-101 21.656217739225127 31.66711638513086 25.353746737031546 21.322919138612466 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 618.0 1 741.5 2 1682.0 3 2638.0 4 3406.5 5 5030.0 6 6392.5 7 7361.0 8 7953.5 9 7881.0 10 7468.5 11 7235.0 12 8507.5 13 12351.5 14 21494.0 15 33744.0 16 43420.5 17 48724.5 18 49518.0 19 46891.0 20 42489.0 21 38162.0 22 36025.5 23 38078.0 24 44761.0 25 57162.0 26 75285.0 27 97531.0 28 126807.0 29 163292.5 30 202939.5 31 248389.5 32 299934.5 33 353412.0 34 405359.0 35 452593.5 36 502277.5 37 547387.5 38 581649.0 39 610776.0 40 637304.0 41 662099.0 42 676216.5 43 685407.0 44 694718.5 45 700594.5 46 707259.0 47 711969.0 48 701814.5 49 681934.0 50 660831.0 51 628318.5 52 586075.0 53 543353.5 54 501011.0 55 457163.5 56 414402.5 57 370982.0 58 325988.5 59 279184.5 60 230947.0 61 186274.0 62 145984.0 63 111166.5 64 82883.5 65 62232.5 66 47201.0 67 36146.5 68 27837.0 69 20293.0 70 14285.5 71 10349.5 72 7479.0 73 5212.5 74 3604.0 75 2469.0 76 1698.0 77 1147.5 78 780.0 79 548.0 80 399.0 81 304.5 82 226.0 83 150.5 84 99.5 85 72.5 86 53.0 87 41.0 88 31.0 89 22.0 90 17.0 91 15.5 92 13.0 93 8.0 94 4.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.799458203039232E-4 3 3.0539544033155255E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.49932275379904E-5 16-17 1.2724810013814692E-5 18-19 1.2088569513123955E-4 20-21 0.0 22-23 1.3045025542000925E-4 24-25 0.002033565801622569 26-27 0.0031835223937083153 28-29 0.0030415949091790904 30-31 0.004640595592396728 32-33 0.0022593268795086615 34-35 0.006360956741594475 36-37 0.02290093976546425 38-39 0.010206027585940174 40-41 0.003932631470099721 42-43 0.0074391640522707934 44-45 0.0042646804358372785 46-47 0.003536679358502899 48-49 0.002259908839975888 50-51 9.65783361204509E-5 52-53 3.350567199093015E-5 54-55 0.0026185391086061506 56-57 0.0025751863659658754 58-59 0.004165257888063905 60-61 0.001880024416903196 62-63 0.0011730884757558187 64-65 2.483664136407592E-4 66-67 6.351057901007119E-5 68-69 1.245811271053899E-4 70-71 1.867145690074785E-4 72-73 0.0010832332127563137 74-75 0.0029274967600176308 76-77 0.0033219722619371814 78-79 0.0011386092267831253 80-81 0.00557387978453027 82-83 0.003980499956111949 84-85 0.006509464631077244 86-87 0.0030805779878192237 88-89 0.05287819688528615 90-91 0.0 92-93 1.6144216284065557E-4 94-95 0.001424430902909394 96-97 0.023939789936014973 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 437.0 20-21 1486.0 22-23 2734.0 24-25 5244.0 26-27 6380.0 28-29 9318.0 30-31 18088.0 32-33 23726.0 34-35 34970.0 36-37 58354.0 38-39 66090.0 40-41 72760.0 42-43 82692.0 44-45 97468.0 46-47 101518.0 48-49 98472.0 50-51 93276.0 52-53 84452.0 54-55 96506.0 56-57 103547.0 58-59 109344.0 60-61 117043.0 62-63 111711.0 64-65 117040.0 66-67 127861.0 68-69 120660.0 70-71 124535.0 72-73 121077.0 74-75 120052.0 76-77 120414.0 78-79 132448.0 80-81 138974.0 82-83 137206.0 84-85 138294.0 86-87 148503.0 88-89 160114.0 90-91 178786.0 92-93 198488.0 94-95 264424.0 96-97 376676.0 98-99 1464510.0 100-101 1.0131649E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.12142395963048 #Duplication Level Percentage of deduplicated Percentage of total 1 87.8870209782852 72.17407310306696 2 8.198911281858507 13.466125387697996 3 2.1207898387358632 5.224868444283127 4 0.7994873076655584 2.6262014457258744 5 0.3793582493170275 1.5576719812373412 6 0.20340375078614226 1.0022283391972686 7 0.1182785301326719 0.6799240922842955 8 0.07574796398926747 0.49764245318731654 9 0.05209349226260345 0.385019258727149 >10 0.1602295665183466 2.0199723066836093 >50 0.0036956022206523775 0.20275570301119253 >100 9.268789310781725E-4 0.12878528822353963 >500 4.243391373437287E-5 0.02278423173973638 >1k 1.4125383361087972E-5 0.011947964934558622 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.272481001381469E-5 0.0 2 0.0 1.9087215020722034E-5 0.0 1.9087215020722034E-5 0.0 3 0.0 1.9087215020722034E-5 0.0 2.544962002762938E-5 0.0 4 0.0 6.99864550759808E-5 0.0 6.362405006907345E-5 0.0 5 0.0 7.634886008288814E-5 0.0 6.99864550759808E-5 0.0 6 0.0 7.634886008288814E-5 0.0 6.99864550759808E-5 0.0 7 0.0 7.634886008288814E-5 0.0 9.543607510361018E-5 0.0 8 0.0 8.271126508979548E-5 0.0 1.0179848011051752E-4 0.0 9 0.0 1.7814734019340567E-4 0.0 2.290465802486644E-4 0.0 10-11 0.0 1.7814734019340567E-4 0.0 3.085766428350062E-4 0.0 12-13 0.0 1.7814734019340567E-4 0.0 3.467510728764503E-4 0.0 14-15 0.0 2.4813379526938647E-4 0.0 3.722006929040797E-4 0.0 16-17 0.0 2.640398077866548E-4 0.0 3.9765031293170907E-4 0.0 18-19 0.0 3.022142378280989E-4 0.0 4.1037512294552376E-4 9.543607510361017E-6 20-21 0.0 3.308450603591819E-4 0.0 4.3264354046969946E-4 2.226841752417571E-5 22-23 0.0 4.040127179386164E-4 0.0 4.803615780215046E-4 4.771803755180508E-5 24-25 0.0 4.4218714798006047E-4 0.0 5.72616450621661E-4 5.72616450621661E-5 26-27 0.0 4.580931604973288E-4 0.0 6.648713232218175E-4 5.72616450621661E-5 28-29 0.0 4.580931604973288E-4 0.0 0.0010148035986017215 5.72616450621661E-5 30-31 0.0 5.217172105664023E-4 0.0 0.0022841033974797366 5.72616450621661E-5 32-33 0.0 5.217172105664023E-4 0.0 0.005271252548222735 6.362405006907345E-5 34-35 0.0 5.694352481182074E-4 0.0 0.00971857364805097 6.362405006907345E-5 36-37 0.0 6.266968931803735E-4 0.0 0.015673784734516243 6.362405006907345E-5 38-39 0.0 6.744149307321785E-4 0.0 0.02655667849883126 6.680525257252712E-5 40-41 6.362405006907345E-6 7.09408158270169E-4 0.0 0.045239880801614674 6.99864550759808E-5 42-43 6.362405006907345E-6 7.221329682839837E-4 0.0 0.05639953918373016 6.99864550759808E-5 44-45 6.362405006907345E-6 7.921194233599645E-4 0.0 0.06989738140588408 7.316765757943447E-5 46-47 6.362405006907345E-6 8.461998659186769E-4 0.0 0.08542483082524147 8.271126508979548E-5 48-49 6.362405006907345E-6 8.557434734290379E-4 0.0 0.0993139609553202 1.0179848011051752E-4 50-51 9.543607510361017E-6 9.257299285050187E-4 0.0 0.11527087271264383 1.0179848011051752E-4 52-53 1.272481001381469E-5 9.352735360153797E-4 0.0 0.13215033319596903 1.1134208762087854E-4 54-55 1.272481001381469E-5 9.41635941022287E-4 0.0 0.18093089238392762 1.272481001381469E-4 56-57 1.272481001381469E-5 9.543607510361017E-4 0.0 0.21289561513863015 1.3679170764850792E-4 58-59 1.272481001381469E-5 9.639043585464627E-4 0.0 0.24588786630194814 1.399729101519616E-4 60-61 1.9087215020722034E-5 9.798103710637312E-4 0.0 0.2669728764948391 1.4633531515886893E-4 62-63 1.9087215020722034E-5 9.957163835809997E-4 0.0 0.2774104019086706 1.5269772016577628E-4 64-65 1.9087215020722034E-5 0.0011197832812156927 0.0 0.2877334040323778 1.5587892266922995E-4 66-67 1.9087215020722034E-5 0.0011388704962364148 0.0 0.2936345346762843 1.5906012517268362E-4 68-69 1.9087215020722034E-5 0.0011579577112571368 0.0 0.2985208617215892 1.5906012517268362E-4 70-71 1.9087215020722034E-5 0.0011738637237744052 0.0 0.30341991357690784 1.5906012517268362E-4 72-73 1.9087215020722034E-5 0.0011834073312847661 0.0 0.30771135575406683 1.8450974520031302E-4 74-75 1.9087215020722034E-5 0.0012215817613262102 0.0 0.3113315642029971 1.8450974520031302E-4 76-77 1.9087215020722034E-5 0.0012692997988780152 0.0 0.31460502157905096 1.9087215020722036E-4 78-79 1.9087215020722034E-5 0.001291568216402191 0.0 0.3175699023122698 1.9087215020722036E-4 80-81 1.9087215020722034E-5 0.001291568216402191 0.0 0.3192654832466106 1.9087215020722036E-4 82-83 1.9087215020722034E-5 0.0012947494189056445 0.0 0.32034391089528136 2.0995936522794239E-4 84-85 1.9087215020722034E-5 0.0013042930264160057 0.0 0.32122510398873805 2.0995936522794239E-4 86-87 1.9087215020722034E-5 0.0013520110639678108 0.0 0.3213555332913796 2.0995936522794239E-4 88-89 1.9087215020722034E-5 0.0014219975190437918 0.0 0.32138416411391074 2.0995936522794239E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15485 0.0 46.014206 1 GTATCAA 27015 0.0 36.67721 1 TCAACGC 31900 0.0 30.091095 4 ATCAACG 32335 0.0 29.740158 3 CAACGCA 33025 0.0 29.052849 5 AACGCAG 34215 0.0 28.10604 6 TATCAAC 35310 0.0 27.530642 2 ACGCAGA 39580 0.0 24.340326 7 CGCAGAG 40395 0.0 23.78455 8 CTTATAC 14705 0.0 21.265678 1 GTACATG 44850 0.0 20.441347 1 TACATGG 44735 0.0 20.01684 2 GCAGAGT 50290 0.0 18.940186 9 ACATGGG 46065 0.0 18.833687 3 TATACAC 20680 0.0 18.743753 3 AGAGTAC 43590 0.0 18.629131 10-11 GAGTACT 23490 0.0 17.437874 12-13 CAGAGTA 48340 0.0 17.091404 10-11 CATGGGG 33715 0.0 16.71584 4 TTATACA 21335 0.0 16.188269 2 >>END_MODULE