##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139734_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7115727 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37681083043236 34.0 31.0 34.0 31.0 34.0 2 32.50773715742608 34.0 31.0 34.0 31.0 34.0 3 32.57514249773776 34.0 31.0 34.0 31.0 34.0 4 36.10969125150529 37.0 35.0 37.0 35.0 37.0 5 36.01924680359435 37.0 35.0 37.0 35.0 37.0 6 36.03760192036597 37.0 35.0 37.0 35.0 37.0 7 35.95592312633691 37.0 35.0 37.0 35.0 37.0 8 35.930711507060344 37.0 35.0 37.0 35.0 37.0 9 37.61325905279953 39.0 37.0 39.0 35.0 39.0 10-11 37.51215778795336 39.0 37.0 39.0 35.0 39.0 12-13 37.47533273831331 39.0 37.0 39.0 35.0 39.0 14-15 38.708243725483 40.0 38.0 41.0 34.0 41.0 16-17 38.75281106203203 40.0 38.0 41.0 34.5 41.0 18-19 38.73736738354352 40.0 38.0 41.0 34.0 41.0 20-21 38.711766373484444 40.0 38.0 41.0 34.0 41.0 22-23 38.61609476690525 40.0 38.0 41.0 34.0 41.0 24-25 38.52837631275497 40.0 38.0 41.0 34.0 41.0 26-27 38.38313616782759 40.0 38.0 41.0 34.0 41.0 28-29 38.249374466585756 40.0 38.0 41.0 34.0 41.0 30-31 38.10411363486271 40.0 38.0 41.0 33.0 41.0 32-33 38.3052212171165 40.0 38.0 41.0 34.0 41.0 34-35 38.2820116751399 40.0 38.0 41.0 34.0 41.0 36-37 38.17469137943225 40.0 38.0 41.0 33.5 41.0 38-39 38.03225460894067 40.0 37.5 41.0 33.0 41.0 40-41 38.01136464932179 40.0 37.0 41.0 33.0 41.0 42-43 37.91062390669421 40.0 37.0 41.0 33.0 41.0 44-45 37.94396992337017 40.0 37.0 41.0 33.0 41.0 46-47 38.06374598074838 40.0 37.5 41.0 33.0 41.0 48-49 38.002465262040936 40.0 37.0 41.0 33.0 41.0 50-51 37.881503014236856 40.0 37.0 41.0 33.0 41.0 52-53 37.75433493751619 40.0 37.0 41.0 33.0 41.0 54-55 37.640689661153964 40.0 36.5 41.0 32.0 41.0 56-57 37.48090599793805 39.0 36.0 41.0 32.0 41.0 58-59 37.346954321826615 39.0 36.0 41.0 32.0 41.0 60-61 37.0939850197916 39.0 35.0 40.5 31.0 41.0 62-63 36.86797274237291 38.5 35.0 40.0 31.0 41.0 64-65 36.645042999496376 38.0 35.0 40.0 31.0 41.0 66-67 36.36329415665428 38.0 35.0 40.0 31.0 41.0 68-69 36.05244065419514 37.0 34.5 40.0 30.5 41.0 70-71 35.740776987696975 36.5 34.0 39.0 30.0 41.0 72-73 35.410700212928994 36.0 34.0 39.0 30.0 40.0 74-75 35.00920248236703 36.0 34.0 38.5 29.5 40.0 76-77 34.00392846648457 35.0 32.5 37.0 28.5 39.0 78-79 34.28394631332073 35.0 33.5 37.0 29.0 39.0 80-81 34.15688867029559 35.0 33.5 36.5 29.0 39.0 82-83 33.900513966079814 35.0 33.0 36.0 29.0 37.5 84-85 33.64748290639455 35.0 33.0 36.0 29.0 37.0 86-87 33.43080053545943 35.0 33.0 35.0 29.0 37.0 88-89 33.19720416544753 35.0 33.0 35.0 29.0 36.0 90-91 33.074455534795774 35.0 33.0 35.0 29.0 36.0 92-93 32.986469881755895 34.0 33.0 35.0 29.0 36.0 94-95 32.93755074925717 34.0 32.5 35.0 29.0 35.5 96-97 32.89567444214924 34.0 32.0 35.0 29.0 35.0 98-99 32.991597512567225 34.0 32.0 35.0 29.0 35.0 100-101 32.182835936846935 33.5 30.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 8.0 20 39.0 21 226.0 22 1226.0 23 4041.0 24 10491.0 25 21626.0 26 38617.0 27 60083.0 28 86722.0 29 114722.0 30 145500.0 31 180558.0 32 225965.0 33 290433.0 34 392138.0 35 556353.0 36 882863.0 37 1532167.0 38 1827113.0 39 719593.0 40 25243.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 37.75834851449472 21.999508974978944 15.529895961438655 24.712246549087677 2 13.759053025591946 22.66064618945531 40.38115635603731 23.199144428915435 3 16.239255461297738 27.953353341649205 32.33695086982209 23.470440327230964 4 11.945511681378445 20.62681718958583 38.899370366513494 28.52830076252223 5 12.603195710009674 38.6152672804901 36.10404109095248 12.677495918547747 6 27.941586291885567 39.3054427186428 19.482436580267905 13.270534409203727 7 25.253203221540115 33.17766406721337 23.416665647796776 18.152467063449738 8 24.868829284765983 35.93562541114913 21.716263145002614 17.479282159082267 9 25.3814684009097 16.577828238773073 20.802863853545812 37.23783950677141 10-11 23.673455994025627 26.885060374013786 29.57153218497562 19.869951446984967 12-13 24.9670483423549 24.304670485531553 28.94902376102962 21.779257411083925 14-15 22.19848293743786 25.765540405229263 26.15541634900168 25.880560308331198 16-17 22.027840584665487 29.108157184782385 26.683787896865635 22.180214333686497 18-19 22.11943259997354 27.94003783594367 28.186323507226007 21.754206056856788 20-21 22.919425971003413 27.045586143701193 27.867910368050907 22.167077517244483 22-23 22.48383114603572 27.595736658433335 27.662242875250065 22.258189320280884 24-25 22.486611091036146 27.814806326567055 27.862309008566932 21.836273573829867 26-27 22.63904740979266 27.780962262287805 27.867660732225442 21.712329595694097 28-29 22.224470941013518 27.297423374066653 28.204593752491547 22.273511932428285 30-31 22.74978953999698 27.47136250735342 27.83709663241456 21.94175132023504 32-33 22.527769937563363 27.219014847528033 28.003989420895543 22.24922579401306 34-35 22.119146062728365 27.670615104232034 28.486087370008256 21.724151463031347 36-37 22.621866703004002 27.453313262631664 27.878509800080764 22.04631023428357 38-39 22.13560139688172 27.187194457078412 28.249892925175818 22.427311220864045 40-41 22.34819338044586 27.051195711230374 28.322600469309904 22.278010439013862 42-43 22.528770872355206 27.007326941079395 28.208957386006762 22.254944800558636 44-45 22.217083905558628 27.407268300095044 28.089142191049497 22.28650560329683 46-47 22.71393781262838 26.998036874232177 27.523372869632606 22.764652443506833 48-49 22.394314526303035 27.14195396363786 27.645287097212424 22.818444412846688 50-51 22.259198924045304 27.240858179612616 27.91984220677643 22.580100689565654 52-53 22.332076040519095 27.331815091072855 28.13148681816489 22.20462205024316 54-55 22.26621669726537 27.383802638141958 27.760703733503707 22.58927693108897 56-57 22.638344369778995 27.722421835255357 27.20951111249576 22.429722682469887 58-59 22.140361715614944 27.95966472383511 27.880568876301894 22.019404684248055 60-61 22.602220616207006 28.26497721376549 27.126080213405885 22.006721956621618 62-63 22.22144305974649 28.54823539809474 27.134773727038297 22.09554781512047 64-65 22.268228086238008 28.267798545598527 27.23759816275122 22.226375205412243 66-67 22.417867871674495 27.97566001424213 27.25862751182806 22.347844602255314 68-69 22.439860863794472 27.732622706435233 27.397882827081204 22.42963360268909 70-71 22.422794231229243 27.543947218348592 27.48012620302573 22.55313234739644 72-73 22.408536345758968 27.636943059288516 27.42846166108904 22.52605893386347 74-75 22.281822268108673 27.75085818553912 27.443078968102775 22.524240578249433 76-77 22.419133465545034 27.656828253155357 27.435490721472323 22.488547559827285 78-79 22.351794195010186 27.727620442410274 27.343890209082765 22.57669515349678 80-81 22.358976911462218 27.749732575007734 27.356599322012414 22.534691191517627 82-83 22.37614816783387 27.704667452560333 27.47657949214597 22.44260488745983 84-85 22.397739450342666 27.68939103757926 27.489770202693958 22.423099309384117 86-87 22.271059171062603 27.759340812545908 27.493807534474474 22.47579248191702 88-89 22.32135934484594 27.758282010458846 27.460693130264048 22.459665514431165 90-91 22.295918554022904 27.793823863012694 27.507674435622555 22.402583147341844 92-93 22.300815177936347 27.734387228702495 27.5437768099606 22.421020783400554 94-95 22.1086637742353 27.864334316911272 27.587214936518095 22.439786972335334 96-97 22.038905623195408 27.90502494704392 27.687395508844006 22.368673920916667 98-99 22.234938259333596 28.48612183868425 27.740850608652355 21.538089293329797 100-101 21.608928874935945 31.71199294469284 25.33577763455117 21.343300545820046 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 583.0 1 614.0 2 1018.0 3 1455.0 4 1839.0 5 2639.0 6 3312.0 7 3862.0 8 4292.0 9 4367.0 10 4168.5 11 4044.0 12 4771.5 13 6920.5 14 11777.5 15 18239.5 16 23346.5 17 26015.5 18 26335.0 19 24833.5 20 22312.0 21 19743.5 22 18236.0 23 18885.0 24 21914.0 25 27723.0 26 36362.5 27 46700.5 28 60128.5 29 76682.0 30 94441.0 31 114625.0 32 136532.5 33 158526.0 34 181011.5 35 201913.0 36 222651.5 37 241398.5 38 256227.5 39 269233.5 40 281412.5 41 291570.0 42 297309.5 43 303172.0 44 308651.5 45 313704.5 46 329128.5 47 347280.0 48 342460.5 49 330113.0 50 322546.5 51 303763.0 52 279267.5 53 255901.5 54 234167.5 55 213340.0 56 193182.0 57 173918.0 58 153653.5 59 131237.5 60 108714.5 61 88418.5 62 69995.5 63 54113.5 64 40922.5 65 30909.0 66 23760.0 67 18289.0 68 14216.5 69 10504.5 70 7460.0 71 5506.5 72 3957.0 73 2757.0 74 1958.5 75 1405.5 76 987.0 77 683.5 78 486.0 79 340.0 80 232.0 81 160.0 82 122.0 83 91.0 84 63.0 85 41.0 86 31.0 87 26.5 88 20.0 89 13.5 90 9.5 91 6.0 92 3.5 93 5.0 94 4.5 95 3.0 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.6864053384847396E-4 3 2.670141785934171E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.8106755641412325E-5 16-17 0.0 18-19 9.134695583459006E-5 20-21 0.0 22-23 1.1947631143173243E-4 24-25 0.0021089986755488317 26-27 0.0031648476294658286 28-29 0.00333543615929452 30-31 0.005014725826908568 32-33 0.002391394366326346 34-35 0.006356221008137659 36-37 0.02207431743634795 38-39 0.008883194898793247 40-41 0.003453850254811027 42-43 0.007343482569137915 44-45 0.004244796623086513 46-47 0.00362756625629092 48-49 0.0021081108533138877 50-51 8.168266892031625E-5 52-53 5.233940308406194E-5 54-55 0.0028169998559865314 56-57 0.0026214749709928095 58-59 0.004388479902680088 60-61 0.001953433100536303 62-63 0.0010890744598641196 64-65 3.010419616844882E-4 66-67 4.011413916702027E-5 68-69 7.305181167275418E-5 70-71 1.3111644918954873E-4 72-73 9.099934571470431E-4 74-75 0.002622385214691504 76-77 0.003178848599114307 78-79 0.001107286807469825 80-81 0.0057864819171579 82-83 0.004223027761139629 84-85 0.006929453496807389 86-87 0.003465255336760462 88-89 0.05393764667314147 90-91 0.0 92-93 1.5792056149863267E-4 94-95 0.001493780766683924 96-97 0.02416443988543304 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 252.0 20-21 787.0 22-23 1467.0 24-25 3021.0 26-27 3561.0 28-29 5242.0 30-31 10395.0 32-33 14380.0 34-35 21490.0 36-37 33130.0 38-39 35209.0 40-41 38058.0 42-43 45183.0 44-45 53329.0 46-47 53914.0 48-49 51096.0 50-51 46711.0 52-53 47228.0 54-55 54344.0 56-57 63407.0 58-59 66463.0 60-61 69885.0 62-63 68862.0 64-65 71833.0 66-67 81734.0 68-69 58680.0 70-71 58095.0 72-73 56784.0 74-75 57301.0 76-77 58068.0 78-79 63092.0 80-81 64446.0 82-83 63695.0 84-85 64894.0 86-87 69165.0 88-89 74372.0 90-91 82239.0 92-93 89642.0 94-95 118705.0 96-97 168389.0 98-99 635948.0 100-101 4391231.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.45569236638111 #Duplication Level Percentage of deduplicated Percentage of total 1 90.12298602030376 77.91645154511046 2 7.140287364028608 12.346369755040312 3 1.630681196754417 4.229450156827262 4 0.5561120959622058 1.9231622515892748 5 0.2324374793970608 1.004777160658467 6 0.11399883396285616 0.5913508871531311 7 0.059061505947419844 0.35743423722197226 8 0.03738330930825589 0.2585599911353474 9 0.02649681062866048 0.20617200975615557 >10 0.07921165838270118 1.0305331621697067 >50 0.0010975846853269338 0.06715001707587938 >100 1.9809682435121875E-4 0.040323233596145654 >500 4.80438143497065E-5 0.028265592665830834 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.4053377820706162E-5 1.4053377820706162E-5 2 0.0 1.4053377820706162E-5 0.0 5.621351128282465E-5 1.4053377820706162E-5 3 0.0 1.4053377820706162E-5 0.0 5.621351128282465E-5 1.4053377820706162E-5 4 0.0 4.216013346211849E-5 0.0 8.432026692423698E-5 1.4053377820706162E-5 5 0.0 4.216013346211849E-5 0.0 8.432026692423698E-5 1.4053377820706162E-5 6 1.4053377820706162E-5 4.216013346211849E-5 0.0 8.432026692423698E-5 1.4053377820706162E-5 7 1.4053377820706162E-5 5.621351128282465E-5 0.0 8.432026692423698E-5 1.4053377820706162E-5 8 1.4053377820706162E-5 8.432026692423698E-5 0.0 1.124270225656493E-4 1.4053377820706162E-5 9 2.8106755641412325E-5 1.6864053384847396E-4 0.0 1.826939116691801E-4 1.4053377820706162E-5 10-11 2.8106755641412325E-5 1.6864053384847396E-4 0.0 1.9674728948988626E-4 1.4053377820706162E-5 12-13 4.216013346211849E-5 1.6864053384847396E-4 0.0 2.1080066731059245E-4 2.1080066731059245E-5 14-15 4.216013346211849E-5 1.9674728948988626E-4 0.0 2.178273562209455E-4 5.621351128282465E-5 16-17 4.216013346211849E-5 2.1080066731059245E-4 0.0 2.3890742295200475E-4 5.621351128282465E-5 18-19 4.216013346211849E-5 2.178273562209455E-4 0.0 2.740408675037701E-4 6.324020019317773E-5 20-21 4.216013346211849E-5 2.3890742295200475E-4 0.0 3.021476231451825E-4 7.026688910353081E-5 22-23 5.621351128282465E-5 2.8106755641412324E-4 0.0 3.5133444551765404E-4 7.026688910353081E-5 24-25 9.837364474494313E-5 3.0917431205553555E-4 0.0 4.145746457108318E-4 7.026688910353081E-5 26-27 9.837364474494313E-5 3.2322768987624173E-4 0.0 5.691618017385995E-4 7.026688910353081E-5 28-29 9.837364474494313E-5 3.2322768987624173E-4 0.0 8.221226025113105E-4 7.026688910353081E-5 30-31 1.1945371147600238E-4 4.1457464571083183E-4 0.0 0.0015739783159190901 7.729357801388389E-5 32-33 1.2648040038635547E-4 4.216013346211849E-4 0.0 0.0029793160979897067 8.432026692423698E-5 34-35 1.4053377820706162E-4 4.567347791729503E-4 0.0 0.005255963304944105 8.432026692423698E-5 36-37 1.5458715602776778E-4 4.918682237247157E-4 0.0 0.008565533781720406 8.432026692423698E-5 38-39 1.5458715602776778E-4 5.410550460971872E-4 0.0 0.0132242285292845 8.432026692423698E-5 40-41 1.5458715602776778E-4 6.253753130214242E-4 0.0 0.01780562969883471 8.432026692423698E-5 42-43 1.5458715602776778E-4 6.464553797524835E-4 0.0 0.02214812344543291 8.432026692423698E-5 44-45 1.6864053384847396E-4 7.378023355870735E-4 0.0 0.027214366149797484 8.432026692423698E-5 46-47 1.897206005795332E-4 8.010425357802513E-4 0.0 0.03274437032224536 9.837364474494313E-5 48-49 1.9674728948988626E-4 8.080692246906044E-4 0.0 0.037880879915713456 1.2648040038635547E-4 50-51 1.9674728948988626E-4 9.415763139873129E-4 0.0 0.04324224355431286 1.2648040038635547E-4 52-53 2.1080066731059245E-4 9.415763139873129E-4 0.0 0.04784472479059413 1.6864053384847396E-4 54-55 2.1080066731059245E-4 9.48603002897666E-4 0.0 0.053297435385028125 2.178273562209455E-4 56-57 2.1080066731059245E-4 9.696830696287252E-4 0.0 0.05905932029151765 2.318807340416517E-4 58-59 2.1080066731059245E-4 9.907631363597845E-4 0.0 0.0642028565738961 2.3890742295200475E-4 60-61 2.3890742295200475E-4 0.0010118432030908437 0.0 0.06936747292300562 2.3890742295200475E-4 62-63 2.5296080077271093E-4 0.0010258965809115499 0.0 0.07399103422601794 2.5296080077271093E-4 64-65 2.5296080077271093E-4 0.0011523769812979052 0.0 0.07875512930723734 2.59987489683064E-4 66-67 2.5296080077271093E-4 0.0011734570480289646 0.0 0.0838213720116019 2.8106755641412324E-4 68-69 2.5296080077271093E-4 0.0012015638036703769 0.0 0.08906328193872531 2.8106755641412324E-4 70-71 2.5296080077271093E-4 0.001215617181491083 0.0 0.09413655133200022 3.021476231451825E-4 72-73 2.5296080077271093E-4 0.0012366972482221422 0.0 0.09838067143385348 3.2322768987624173E-4 74-75 2.5296080077271093E-4 0.0013069641373256733 0.0 0.10220319020108556 3.2322768987624173E-4 76-77 2.5296080077271093E-4 0.001377231026429204 0.0 0.10554086743350329 3.2322768987624173E-4 78-79 2.5296080077271093E-4 0.0014193911598913225 0.0 0.10906123857759017 3.2322768987624173E-4 80-81 2.5296080077271093E-4 0.0014193911598913225 0.0 0.11086007093864056 3.3025437878659485E-4 82-83 2.6701417859341706E-4 0.0014404712266223817 0.0 0.11205460805340059 3.372810676969479E-4 84-85 2.8106755641412324E-4 0.0014545246044430878 0.0 0.11314374483450532 3.372810676969479E-4 86-87 2.8106755641412324E-4 0.0015177648046362656 0.0 0.11349507928002298 3.372810676969479E-4 88-89 2.8106755641412324E-4 0.0015880316937397965 0.0 0.11357939954694721 3.372810676969479E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9515 0.0 54.93432 1 GGTATCA 7730 0.0 48.244247 1 TATACAC 12805 0.0 42.931072 3 TTATACA 12735 0.0 42.055313 2 GTATCAA 13765 0.0 36.69488 1 TACACAT 17150 0.0 31.92925 5 ACACATC 17355 0.0 29.747002 6 ACATCTC 17575 0.0 29.594395 8 ATCAACG 16705 0.0 29.49155 3 TCAACGC 16760 0.0 29.394772 4 CAACGCA 17255 0.0 28.526642 5 TATCAAC 17775 0.0 27.909592 2 AACGCAG 17830 0.0 27.630753 6 CACATCT 19200 0.0 26.977905 7 ATACACA 22380 0.0 25.925003 4 CATCTCC 20375 0.0 25.190441 9 ACGCAGA 21155 0.0 23.247368 7 CGCAGAG 21630 0.0 22.816212 8 GTACATG 24055 0.0 20.266476 1 TACATGG 24010 0.0 19.857618 2 >>END_MODULE