##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139733_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22568076 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.38266576202597 34.0 31.0 34.0 31.0 34.0 2 32.50915713860588 34.0 31.0 34.0 31.0 34.0 3 32.58152963504731 34.0 31.0 34.0 31.0 34.0 4 36.11420264625128 37.0 35.0 37.0 35.0 37.0 5 36.02043457315546 37.0 35.0 37.0 35.0 37.0 6 36.03995249750134 37.0 35.0 37.0 35.0 37.0 7 35.956452778695 37.0 35.0 37.0 35.0 37.0 8 35.93034067237278 37.0 35.0 37.0 35.0 37.0 9 37.61440598658034 39.0 37.0 39.0 35.0 39.0 10-11 37.512345647010406 39.0 37.0 39.0 35.0 39.0 12-13 37.47808029802806 39.0 37.0 39.0 35.0 39.0 14-15 38.71436415315156 40.0 38.0 41.0 34.0 41.0 16-17 38.76354094163809 40.0 38.0 41.0 35.0 41.0 18-19 38.74348907722572 40.0 38.0 41.0 34.0 41.0 20-21 38.7072277551219 40.0 38.0 41.0 34.0 41.0 22-23 38.611533306294575 40.0 38.0 41.0 34.0 41.0 24-25 38.53213885024269 40.0 38.0 41.0 34.0 41.0 26-27 38.38247046264466 40.0 38.0 41.0 34.0 41.0 28-29 38.24488459411349 40.0 38.0 41.0 34.0 41.0 30-31 38.09917462010017 40.0 38.0 41.0 33.0 41.0 32-33 38.31458225861388 40.0 38.0 41.0 34.0 41.0 34-35 38.30361411162258 40.0 38.0 41.0 34.0 41.0 36-37 38.196380557011686 40.0 38.0 41.0 33.5 41.0 38-39 38.06857049246564 40.0 38.0 41.0 33.0 41.0 40-41 38.02708056643532 40.0 37.5 41.0 33.0 41.0 42-43 37.92046891724462 40.0 37.0 41.0 33.0 41.0 44-45 37.946247755243846 40.0 37.0 41.0 33.0 41.0 46-47 38.05971769388696 40.0 37.0 41.0 33.0 41.0 48-49 37.98925739755414 40.0 37.0 41.0 33.0 41.0 50-51 37.864972516213456 40.0 37.0 41.0 33.0 41.0 52-53 37.72306244522961 40.0 37.0 41.0 32.5 41.0 54-55 37.60571279662209 40.0 36.0 41.0 32.0 41.0 56-57 37.448341877473666 39.0 36.0 41.0 32.0 41.0 58-59 37.29740317847711 39.0 36.0 41.0 32.0 41.0 60-61 37.04859048965556 39.0 35.0 40.5 31.0 41.0 62-63 36.80306219750524 38.5 35.0 40.0 31.0 41.0 64-65 36.55946479553252 38.0 35.0 40.0 31.0 41.0 66-67 36.265841381448524 37.5 35.0 40.0 31.0 41.0 68-69 35.94306818176196 37.0 34.5 39.5 30.0 41.0 70-71 35.631709365281395 36.5 34.0 39.0 30.0 41.0 72-73 35.30014762668331 36.0 34.0 39.0 30.0 40.0 74-75 34.897575291097766 35.5 34.0 38.0 29.5 40.0 76-77 33.898933322316246 35.0 32.5 37.0 28.5 39.0 78-79 34.18628575624395 35.0 33.0 37.0 29.0 39.0 80-81 34.067910728849746 35.0 33.0 36.5 29.0 39.0 82-83 33.82641547933393 35.0 33.0 36.0 29.0 37.5 84-85 33.58932626688872 35.0 33.0 35.5 29.0 37.0 86-87 33.38910008080411 35.0 33.0 35.0 29.0 37.0 88-89 33.16752206654607 35.0 33.0 35.0 29.0 36.0 90-91 33.05336487238453 35.0 33.0 35.0 29.0 36.0 92-93 32.972108407921276 34.0 33.0 35.0 29.0 36.0 94-95 32.929123707956336 34.0 32.5 35.0 29.0 35.0 96-97 32.891981091732006 34.0 32.0 35.0 29.0 35.0 98-99 32.99065382527489 34.0 32.0 35.0 29.0 35.0 100-101 32.18685784877576 33.5 30.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 5.0 19 31.0 20 132.0 21 798.0 22 3712.0 23 12464.0 24 32166.0 25 68769.0 26 122573.0 27 193047.0 28 275458.0 29 366014.0 30 464312.0 31 576970.0 32 722322.0 33 927413.0 34 1261327.0 35 1795994.0 36 2872339.0 37 4941721.0 38 5673917.0 39 2176621.0 40 79970.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.514098410515814 21.47191457526109 15.416183461984087 24.59780355223901 2 14.117205361620194 22.472662543990882 39.713078177983554 23.697053916405373 3 16.64947638887984 27.372598418051336 31.865661579328137 24.112263613740684 4 12.386372679709162 19.999680079063893 38.664944233615664 28.949003007611285 5 13.100385695262636 38.21978887345116 35.616195195372434 13.063630235913775 6 28.806252690747762 38.64601483972316 19.25801738703822 13.289715082490861 7 25.91373318664825 33.02032038530888 23.211003897718175 17.854942530324696 8 25.367434955465413 35.49400046330932 21.3221632185216 17.816401362703672 9 25.69216356768738 16.564176760127893 20.689597110537914 37.054062561646816 10-11 24.068090695901592 26.587456990130658 29.250364541487716 20.09408777248003 12-13 25.288679903417556 24.09400783655638 28.743026211007088 21.874286049018977 14-15 22.575014883305382 25.55075651900518 26.0098121365842 25.86441646110524 16-17 22.341064143509453 28.72881778195123 26.534687307949113 22.39543076659021 18-19 22.51872198542608 27.737058835714777 27.924972702008738 21.819246476850406 20-21 23.297641599972277 26.894564398542308 27.616755735919803 22.191038265565613 22-23 22.868057043003226 27.081306582010782 27.569517376468937 22.48111899851705 24-25 22.837463493454823 27.199305720631823 27.55168548321814 22.411545302695217 26-27 22.83279483673069 27.266270131806092 27.542698018223838 22.358237013239375 28-29 22.641898528203306 27.022854269129017 27.649311152374327 22.68593605029335 30-31 22.875723565915486 27.002693950846137 27.66990064848581 22.451681834752566 32-33 22.53219140001267 27.024674081651685 27.81695439243182 22.626180125903826 34-35 22.616300601215276 27.069282023873786 27.67705095897957 22.637366415931368 36-37 22.69335838076679 27.127422952940993 27.732377028878265 22.446841637413957 38-39 22.596945195030653 27.023087193409317 27.77447156250664 22.605496049053382 40-41 22.765209551245388 26.88709951869098 27.76781618216001 22.57987474790362 42-43 22.752956303991535 26.951515021049175 27.680587666240346 22.614941008718933 44-45 22.68775376328146 27.114119052242703 27.526632486853497 22.67149469762234 46-47 22.969902103769225 26.969464429246337 27.125831125490325 22.934802341494116 48-49 22.720571099242008 27.060857650240163 27.309616656184126 22.908954594333704 50-51 22.689255165953565 27.192433207413067 27.32850352019589 22.789808106437473 52-53 22.794035214199624 27.173050099239177 27.383239154568926 22.649675531992273 54-55 22.71589441975595 27.13065636186086 27.26193557384265 22.891513644540535 56-57 22.877568158014387 27.355800694357846 27.03008601362511 22.736545134002654 58-59 22.662620274683004 27.465117595910705 27.299863500247483 22.572398629158805 60-61 22.885873501391057 27.56905792601223 26.987521347720495 22.557547224876217 62-63 22.718079322590206 27.765129478364713 26.93907251057733 22.577718688467755 64-65 22.74516910472295 27.61253018078792 26.939865336827275 22.70243537766186 66-67 22.81874982190328 27.47819688164097 26.954236643248073 22.74881665320768 68-69 22.75583272079043 27.39505881832458 27.043920543816334 22.805187917068658 70-71 22.783268217205794 27.185096412003663 27.100802869673775 22.93083250111677 72-73 22.76579691543567 27.2807566324712 27.011872525307318 22.941573926785818 74-75 22.57378306975147 27.383585279046457 27.09080338051657 22.9518282706855 76-77 22.745727909759196 27.31933093480037 27.061824357993437 22.873116797447 78-79 22.701945268535226 27.352799299780884 27.013851720761206 22.931403710922684 80-81 22.699074971575982 27.382582566991374 27.021992506415852 22.896349955016788 82-83 22.688326712745656 27.359726664535682 27.117680023414874 22.834266599303792 84-85 22.68471498156595 27.37878660761262 27.131244715431073 22.805253695390356 86-87 22.588857201700797 27.363823821463733 27.184954243087272 22.86236473374819 88-89 22.629685054112926 27.370487212586426 27.12656039035069 22.87326734294996 90-91 22.618001592457414 27.447521693067657 27.18979925064397 22.744677463830957 92-93 22.619924406899784 27.389253887374608 27.21778620007193 22.77303550565367 94-95 22.455729093317725 27.443799374809615 27.28284788020127 22.817623651671394 96-97 22.383133826957252 27.509127119102857 27.36754550366457 22.74019355027532 98-99 22.568577980305886 28.110226420341444 27.405976347844508 21.915219251508166 100-101 22.02773640674941 31.269451697487533 24.94068286727666 21.762129028486395 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1671.0 1 1728.0 2 2928.0 3 4253.0 4 5343.5 5 7728.0 6 9802.5 7 11480.0 8 12671.5 9 12848.0 10 12234.0 11 11762.0 12 13756.0 13 19599.5 14 33551.0 15 52486.5 16 67779.5 17 76368.0 18 78015.5 19 74002.0 20 66692.0 21 58592.0 22 53265.5 23 54265.0 24 62521.5 25 78878.5 26 102661.5 27 131656.5 28 170068.0 29 219295.5 30 271325.0 31 331804.5 32 401954.0 33 472256.5 34 539777.0 35 602203.5 36 667166.0 37 728904.5 38 777375.5 39 814870.0 40 854929.0 41 895435.5 42 920588.0 43 941280.5 44 961041.5 45 975293.5 46 984383.0 47 991506.0 48 1019331.0 49 1021176.5 50 987427.5 51 963857.0 52 931564.0 53 879105.0 54 816079.5 55 749496.5 56 686383.0 57 624280.5 58 555868.5 59 481923.0 60 405644.5 61 333865.5 62 266437.0 63 206547.0 64 155560.5 65 117101.5 66 89945.0 67 69664.0 68 53693.0 69 39508.0 70 28482.0 71 21031.0 72 15369.5 73 10935.0 74 7731.5 75 5496.0 76 3801.5 77 2569.0 78 1788.0 79 1242.5 80 876.5 81 615.5 82 467.0 83 349.0 84 262.0 85 207.5 86 164.0 87 125.5 88 86.5 89 58.5 90 39.5 91 29.0 92 24.5 93 17.0 94 11.0 95 8.5 96 8.0 97 7.5 98 3.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.0825878112073E-4 3 3.8550029696815974E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.9939670532835853E-5 16-17 6.646556844278617E-6 18-19 1.04129390560365E-4 20-21 0.0 22-23 1.0636485992213293E-4 24-25 0.0019616660312124783 26-27 0.003013671691271223 28-29 0.003048607382169494 30-31 0.004703876118292135 32-33 0.002275752761952991 34-35 0.00603150120408163 36-37 0.022818095179162667 38-39 0.009820597672534093 40-41 0.0037565537963140474 42-43 0.007244056373351255 44-45 0.004189880630506784 46-47 0.0033696296959168665 48-49 0.0021663493150872793 50-51 1.1005502774803365E-4 52-53 4.9511699119384916E-5 54-55 0.002562487833229397 56-57 0.0025605053522585897 58-59 0.004308857348063842 60-61 0.0019122547749721266 62-63 0.001260369337941526 64-65 2.7332812701230067E-4 66-67 5.021226607831281E-5 68-69 1.2683782297792987E-4 70-71 1.7672644835776564E-4 72-73 0.0010602573197967264 74-75 0.0029450689806693295 76-77 0.003451089662446785 78-79 0.0011984801992694384 80-81 0.005625109324767154 82-83 0.004052284160653351 84-85 0.006477816645289689 86-87 0.003082229536587625 88-89 0.05075054638693086 90-91 2.8622786846764675E-6 92-93 1.598750207546845E-4 94-95 0.001369818959341732 96-97 0.02389350410517993 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 797.0 20-21 2411.0 22-23 4846.0 24-25 10052.0 26-27 11413.0 28-29 17579.0 30-31 34486.0 32-33 47257.0 34-35 69646.0 36-37 107495.0 38-39 112386.0 40-41 119509.0 42-43 139952.0 44-45 167887.0 46-47 170196.0 48-49 161792.0 50-51 147055.0 52-53 148499.0 54-55 171644.0 56-57 186674.0 58-59 189680.0 60-61 191375.0 62-63 186264.0 64-65 193762.0 66-67 218206.0 68-69 188234.0 70-71 188378.0 72-73 183926.0 74-75 185782.0 76-77 186502.0 78-79 203606.0 80-81 209409.0 82-83 205196.0 84-85 209867.0 86-87 223681.0 88-89 239706.0 90-91 263079.0 92-93 287450.0 94-95 379908.0 96-97 536620.0 98-99 2036087.0 100-101 1.4029782E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.51100774406369 #Duplication Level Percentage of deduplicated Percentage of total 1 86.74239903989964 68.96975561800124 2 8.7404491590152 13.89923841538105 3 2.309492880917029 5.5089031901836165 4 0.9264846513055237 2.9466291313883857 5 0.4452774764770818 1.7702230440213196 6 0.25032894328505667 1.1942343928860855 7 0.15980670690761883 0.8894474617339501 8 0.1020884768625151 0.6493726139516085 9 0.06941036320316689 0.49669991335487484 >10 0.24579246375481126 3.0596136490971757 >50 0.006544192525889668 0.3442775866530968 >100 0.0019004482284148473 0.2487864063316509 >500 1.2600883612560536E-5 0.007915080740552735 >1k 1.2596734454597904E-5 0.014903496275449384 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.431037896185745E-6 2 0.0 1.3293113688557235E-5 0.0 3.101726527330021E-5 4.431037896185745E-6 3 0.0 1.3293113688557235E-5 0.0 4.431037896185745E-5 4.431037896185745E-6 4 0.0 3.544830316948596E-5 0.0 1.2406906109320085E-4 4.431037896185745E-6 5 0.0 3.9879341065671706E-5 0.0 1.5065528847031532E-4 4.431037896185745E-6 6 0.0 3.9879341065671706E-5 0.0 1.5065528847031532E-4 4.431037896185745E-6 7 0.0 4.431037896185745E-5 0.0 1.5951736426268682E-4 8.86207579237149E-6 8 0.0 4.8741416858043194E-5 0.0 1.7281047795124406E-4 8.86207579237149E-6 9 0.0 7.975868213134341E-5 0.0 3.9879341065671706E-4 8.86207579237149E-6 10-11 0.0 8.197420107943629E-5 0.0 5.405866233346608E-4 8.86207579237149E-6 12-13 0.0 8.418972002752915E-5 0.0 5.871125212446112E-4 1.9939670532835853E-5 14-15 0.0 1.3957769372985096E-4 0.0 6.42500494946933E-4 2.6586227377114467E-5 16-17 0.0 1.528708074184082E-4 0.0 6.868108739087904E-4 3.544830316948596E-5 18-19 0.0 1.7502599689933694E-4 0.0 7.444143665592052E-4 4.874141685804319E-5 20-21 0.0 2.0825878112073E-4 0.0 8.241730486905485E-4 7.089660633897192E-5 22-23 0.0 2.5478467903068035E-4 0.0 9.127938066142634E-4 7.089660633897192E-5 24-25 0.0 2.7693986851160907E-4 0.0 0.0010723111708769502 7.975868213134341E-5 26-27 0.0 2.8358642535588767E-4 0.0 0.0012495526867243802 7.975868213134341E-5 28-29 0.0 2.8358642535588767E-4 0.0 0.0018167255374361554 7.975868213134341E-5 30-31 0.0 3.3897439905820946E-4 0.0 0.0033609422442568877 7.975868213134341E-5 32-33 0.0 3.4118991800630237E-4 0.0 0.006812720765385583 7.975868213134341E-5 34-35 0.0 4.0543996750099567E-4 0.0 0.012378104362994878 9.748283371608639E-5 36-37 0.0 4.6969001699568897E-4 0.0 0.019786799725417442 9.748283371608639E-5 38-39 0.0 4.8741416858043193E-4 0.0 0.02908754826951132 9.969835266417925E-5 40-41 2.2155189480928724E-6 5.405866233346609E-4 0.0 0.03880259885689857 1.1077594740464362E-4 42-43 4.431037896185745E-6 5.583107749194038E-4 0.0 0.04741875204603175 1.1520698530082936E-4 44-45 4.431037896185745E-6 6.535780896873974E-4 0.0 0.059528778616307385 1.1520698530082936E-4 46-47 4.431037896185745E-6 7.355522907668337E-4 0.0 0.06802750930119164 1.2628458004129372E-4 48-49 4.431037896185745E-6 7.421988476111123E-4 0.0 0.07464304888019696 1.285000989893866E-4 50-51 4.431037896185745E-6 8.773455034447775E-4 0.0 0.08074901910114092 1.3293113688557235E-4 52-53 4.431037896185745E-6 8.817765413409632E-4 0.0 0.08589566961756066 1.440087316260367E-4 54-55 6.646556844278618E-6 8.884230981852418E-4 0.0 0.09128602721827062 1.5730184531459395E-4 56-57 8.86207579237149E-6 9.172248445104492E-4 0.0 0.09649471226523697 1.683794400550583E-4 58-59 8.86207579237149E-6 9.238714013547278E-4 0.0 0.10119604347309004 1.7945703479552266E-4 60-61 1.1077594740464362E-5 9.460265908356565E-4 0.0 0.10595719369254161 1.861035916398013E-4 62-63 1.3293113688557235E-5 9.659662613684923E-4 0.0 0.11057211966141908 1.9496566743217278E-4 64-65 1.3293113688557235E-5 0.0010634490950845788 0.0 0.11515159732712704 1.9496566743217278E-4 66-67 1.3293113688557235E-5 0.0010656646140326715 0.0 0.1200789114676856 1.9496566743217278E-4 68-69 1.3293113688557235E-5 0.0010856042845655074 0.0 0.12512143259354497 1.9718118638026565E-4 70-71 1.772415158474298E-5 0.0011033284361502505 0.0 0.13017503131414482 2.0604326217263713E-4 72-73 1.772415158474298E-5 0.0011166215498388077 0.0 0.13443104321343122 2.3041397060165873E-4 74-75 1.772415158474298E-5 0.001163147447748758 0.0 0.1382262271715143 2.3041397060165873E-4 76-77 1.772415158474298E-5 0.0012606302814648445 0.0 0.14178656612109955 2.3041397060165873E-4 78-79 1.772415158474298E-5 0.0012916475467381447 0.0 0.145136430770616 2.3041397060165873E-4 80-81 1.772415158474298E-5 0.0012982941035824232 0.0 0.14695094078910403 2.414915653421231E-4 82-83 1.772415158474298E-5 0.0013071561793747948 0.0 0.14806091578209857 2.570001979787732E-4 84-85 1.772415158474298E-5 0.0013182337741152591 0.0 0.14906011482768844 2.6143123587495895E-4 86-87 1.772415158474298E-5 0.0013536820772847452 0.0 0.14919526148352213 2.658622737711447E-4 88-89 2.4370708429021597E-5 0.00142679420257181 0.0 0.14923735634353588 2.7029331166733046E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24415 0.0 48.172592 1 CTTATAC 21190 0.0 39.970318 1 GTATCAA 41665 0.0 35.654137 1 TATACAC 29310 0.0 32.386333 3 TTATACA 29355 0.0 30.170174 2 TCAACGC 51200 0.0 28.409836 4 ATCAACG 52000 0.0 28.022467 3 CAACGCA 53170 0.0 27.381468 5 TATCAAC 54430 0.0 27.008263 2 AACGCAG 54505 0.0 26.702927 6 TACACAT 37545 0.0 24.595991 5 ACACATC 37330 0.0 22.953407 6 ACATCTC 38710 0.0 22.45705 8 ACGCAGA 65370 0.0 22.284412 7 CGCAGAG 66145 0.0 22.036306 8 GTACATG 71545 0.0 19.970745 1 ATACACA 52365 0.0 19.87527 4 CACATCT 42950 0.0 19.809887 7 TACATGG 71480 0.0 19.604156 2 ACATGGG 74325 0.0 18.391226 3 >>END_MODULE