##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139727_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 26182064 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43347590930952 34.0 31.0 34.0 31.0 34.0 2 32.53905490415118 34.0 31.0 34.0 31.0 34.0 3 32.614771738393124 34.0 31.0 34.0 31.0 34.0 4 36.15290605049319 37.0 35.0 37.0 35.0 37.0 5 36.07709812335651 37.0 35.0 37.0 35.0 37.0 6 36.10680987564617 37.0 35.0 37.0 35.0 37.0 7 36.02317158800009 37.0 35.0 37.0 35.0 37.0 8 36.00123672449964 37.0 35.0 37.0 35.0 37.0 9 37.69697453951682 39.0 37.0 39.0 35.0 39.0 10-11 37.59633757292779 39.0 37.0 39.0 35.0 39.0 12-13 37.56247589953183 39.0 37.0 39.0 35.0 39.0 14-15 38.79727618112919 40.0 38.0 41.0 35.0 41.0 16-17 38.857809567649056 40.0 38.0 41.0 35.0 41.0 18-19 38.859215530143075 40.0 38.0 41.0 35.0 41.0 20-21 38.836309641062364 40.0 38.0 41.0 35.0 41.0 22-23 38.74246975214115 40.0 38.0 41.0 34.5 41.0 24-25 38.66726956667474 40.0 38.0 41.0 34.0 41.0 26-27 38.5360665556605 40.0 38.0 41.0 34.0 41.0 28-29 38.40543861426015 40.0 38.0 41.0 34.0 41.0 30-31 38.25465063960743 40.0 38.0 41.0 34.0 41.0 32-33 38.448682513253246 40.0 38.0 41.0 34.0 41.0 34-35 38.43081782010341 40.0 38.0 41.0 34.0 41.0 36-37 38.338711571444435 40.0 38.0 41.0 34.0 41.0 38-39 38.23147929883331 40.0 38.0 41.0 34.0 41.0 40-41 38.19499409361063 40.0 38.0 41.0 33.5 41.0 42-43 38.0976268719724 40.0 37.5 41.0 33.0 41.0 44-45 38.12853623463165 40.0 37.5 41.0 33.5 41.0 46-47 38.24234385395755 40.0 38.0 41.0 33.0 41.0 48-49 38.18077312104219 40.0 38.0 41.0 33.0 41.0 50-51 38.08611748855242 40.0 37.0 41.0 33.0 41.0 52-53 37.95042802117419 40.0 37.0 41.0 33.0 41.0 54-55 37.84643345213124 40.0 37.0 41.0 33.0 41.0 56-57 37.7043219858742 40.0 36.5 41.0 33.0 41.0 58-59 37.55733750500253 39.0 36.0 41.0 32.5 41.0 60-61 37.32865122111774 39.0 36.0 41.0 32.0 41.0 62-63 37.09207042788293 39.0 35.0 40.0 31.5 41.0 64-65 36.86029455411834 38.0 35.0 40.0 31.0 41.0 66-67 36.57912546931422 38.0 35.0 40.0 31.0 41.0 68-69 36.26520413891625 37.0 35.0 40.0 31.0 41.0 70-71 35.96240684154107 37.0 34.5 39.0 31.0 41.0 72-73 35.63779500282906 36.0 34.0 39.0 30.5 40.5 74-75 35.237793766874745 36.0 34.0 39.0 30.0 40.0 76-77 34.220171410045694 35.0 33.0 37.0 29.0 39.0 78-79 34.50556384014715 35.0 34.0 37.0 29.5 39.0 80-81 34.371768676890525 35.0 34.0 37.0 30.0 39.0 82-83 34.10842177153174 35.0 34.0 36.0 29.5 38.5 84-85 33.850148435728755 35.0 33.0 36.0 29.0 37.0 86-87 33.62694721316392 35.0 33.0 35.5 29.0 37.0 88-89 33.38279447375116 35.0 33.0 35.0 29.0 36.5 90-91 33.24663810980649 35.0 33.0 35.0 29.0 36.0 92-93 33.15001779021357 35.0 33.0 35.0 29.0 36.0 94-95 33.08741476215126 34.0 33.0 35.0 29.0 36.0 96-97 33.0296144340726 34.0 33.0 35.0 29.0 35.0 98-99 33.10420719392924 34.0 33.0 35.0 29.0 35.0 100-101 32.299515474583195 33.5 31.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 4.0 19 22.0 20 119.0 21 558.0 22 2808.0 23 9826.0 24 25880.0 25 56417.0 26 104146.0 27 168962.0 28 249968.0 29 343564.0 30 453874.0 31 586718.0 32 758180.0 33 999813.0 34 1388941.0 35 1992141.0 36 3205297.0 37 5577684.0 38 6744748.0 39 3370508.0 40 141882.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.71938194024734 21.573810987552395 14.434778709577673 24.272028362622596 2 14.074282727500332 22.90095922789688 40.567974289201416 22.456783755401375 3 16.707165903259778 28.132186361036553 31.800064739195573 23.360582996508093 4 11.7839334591803 19.382646837926913 39.9086145385635 28.924805164329292 5 12.224204325526054 38.89795701362581 36.316170489843735 12.561668171004396 6 28.36512430799955 39.752931625253076 19.24952517112478 12.63241889562259 7 25.061901154928044 33.567044217751516 24.363720904509286 17.007333722811158 8 24.351838724403088 36.54090449095228 21.922274729753926 17.184982054890707 9 25.80264489461182 15.9141616948152 21.370973655858453 36.91221975471453 10-11 23.51676132179648 27.06845228092025 29.91683734330494 19.497949053978328 12-13 24.612668046338896 24.86961875885721 29.72380061403868 20.793912580765213 14-15 21.78670217597104 26.073322807550113 27.32207682069912 24.81789819577972 16-17 21.19808974556702 29.2123763972448 27.884112030595603 21.705421826592573 18-19 21.27011290276532 28.402799361432557 29.5434361165673 20.783651619234824 20-21 22.281375032834084 27.56614724039187 29.202383740221343 20.9500939865527 22-23 21.87344489782275 27.595156996497394 29.073143105453035 21.45825500022682 24-25 21.54025111856693 27.776159292199743 29.197847723272897 21.485741865960428 26-27 21.521743127517905 27.903670439662175 29.126978311210376 21.447608121609544 28-29 21.47286496334837 27.942970142993413 29.10751950946697 21.476645384191244 30-31 21.71545422838237 27.813414016381792 29.050475964956 21.420655790279834 32-33 21.474803848715098 28.00443924486759 29.01956372256467 21.501193183852646 34-35 21.590194803016544 28.08313607444337 29.04210397099857 21.284565151541514 36-37 21.60573262203971 28.006389159041817 28.919177916889826 21.46870030202864 38-39 21.49435511554298 28.086104027616425 28.967371863337803 21.452168993502788 40-41 21.678966286829322 27.979098244661145 28.865855897734267 21.47607957077527 42-43 21.65346038556448 28.06158621346373 28.666370114039335 21.61858328693246 44-45 21.68505953924897 28.20308567526824 28.465056605142454 21.646798180340333 46-47 21.811246089645937 28.147506677202376 28.1763126246832 21.864934608468488 48-49 21.73948837462921 28.253776782147792 28.13755245442301 21.86918238879999 50-51 21.749526426350496 28.38274977736233 27.9916472919247 21.87607650436247 52-53 21.876721767346645 28.27783236489814 27.935847382563367 21.909598485191857 54-55 21.8479227579107 28.221074536719755 27.962265364962434 21.968737340407113 56-57 21.916601088438203 28.288792532127133 27.880539457007565 21.914066922427104 58-59 21.836933101965315 28.333924362976866 27.930578785728606 21.898563749329213 60-61 21.918087220556046 28.32288666790714 27.886349479901074 21.872676631635734 62-63 21.848368484678865 28.364803605585404 27.858416094273338 21.928411815462397 64-65 21.814446696831084 28.30300624110237 27.86373531670567 22.01881174536088 66-67 21.877004350799723 28.344167694599797 27.72969341097145 22.04913454362903 68-69 21.910379033947187 28.30409796282029 27.75429685011474 22.03122615311778 70-71 21.90426524182901 28.06433728656114 27.83088735902881 22.200510112581036 72-73 21.90317413979656 28.073484539505362 27.82601927666478 22.197322044033303 74-75 21.85964177078807 28.10203520384778 27.78670539843922 22.251617626924933 76-77 21.950204841657545 28.104486629535074 27.75212049705561 22.19318803175177 78-79 21.93487273785295 28.07455707369007 27.70379447310439 22.28677571535259 80-81 21.947831220669297 28.056399384816693 27.702411058611958 22.29335833590205 82-83 21.97868893851016 27.99854412242844 27.79102878286549 22.231738156195906 84-85 22.044254390473114 28.009247362616208 27.7552089961463 22.191289250764378 86-87 21.92591589533278 28.001108234949633 27.8323592139849 22.24061665573268 88-89 21.975071047805443 27.913394927938118 27.83498593207859 22.276548092177844 90-91 21.983685592412254 27.882695456378727 27.94143319987286 22.19218575133616 92-93 21.9468871316375 27.814062318568418 27.97487524854299 22.264175301251097 94-95 21.8162565859038 27.86317602828096 28.021886862324475 22.29868052349076 96-97 21.775426780292 27.90245440794486 28.117999909122098 22.20411890264104 98-99 21.959046121965432 28.51653844650688 28.154107037853265 21.370308393674424 100-101 21.449051171595347 31.659408783317044 25.726513742848145 21.16502630223946 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3479.0 1 3745.5 2 7220.0 3 11043.0 4 15261.0 5 24330.0 6 31090.5 7 34890.0 8 36407.5 9 34678.0 10 31821.0 11 29889.0 12 35073.0 13 50831.0 14 84060.5 15 126301.5 16 158083.0 17 173545.5 18 172941.0 19 161066.5 20 144866.5 21 131166.0 22 127803.0 23 140347.5 24 168660.5 25 211530.5 26 266893.0 27 326031.5 28 387403.0 29 452039.5 30 512656.5 31 574314.5 32 638702.0 33 700171.5 34 761475.5 35 819653.0 36 879675.5 37 931985.5 38 968149.0 39 1000325.5 40 1031808.0 41 1058416.0 42 1076922.0 43 1094032.0 44 1110067.0 45 1117867.5 46 1120552.5 47 1121118.5 48 1109653.5 49 1086893.5 50 1056655.5 51 1012163.0 52 952920.0 53 889498.0 54 823727.0 55 753131.5 56 684267.0 57 614012.5 58 540015.5 59 465143.5 60 389952.5 61 316258.5 62 249514.5 63 193177.0 64 145095.0 65 107768.0 66 80677.0 67 61167.0 68 46345.5 69 33483.5 70 23969.0 71 17482.5 72 12669.0 73 9044.5 74 6383.0 75 4490.5 76 3121.5 77 2155.5 78 1480.5 79 1031.5 80 752.5 81 556.5 82 436.0 83 313.5 84 222.0 85 175.0 86 142.5 87 117.0 88 85.5 89 57.5 90 42.5 91 33.5 92 28.0 93 22.5 94 13.5 95 7.5 96 6.0 97 5.5 98 3.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.6353919232647205E-4 3 3.399273640153045E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.291645150664974E-5 16-17 7.638817168883247E-6 18-19 8.21172845654949E-5 20-21 0.0 22-23 1.3179522826398715E-4 24-25 0.0020729517378815384 26-27 0.0030789887912767255 28-29 0.0030058891908779214 30-31 0.004639580871408262 32-33 0.002294254782849265 34-35 0.006130637173382454 36-37 0.022449460629967773 38-39 0.009795697269244496 40-41 0.00386064914119545 42-43 0.00721871663130369 44-45 0.004142969732466275 46-47 0.0033566889571390824 48-49 0.0021839481373336442 50-51 9.346224726484291E-5 52-53 5.243492919669563E-5 54-55 0.002662544421421266 56-57 0.0025255480786834186 58-59 0.004210706248054737 60-61 0.001886697744637581 62-63 0.0011432735357784025 64-65 2.862216071240379E-4 66-67 5.2048174885488355E-5 68-69 1.191626568432639E-4 70-71 2.2284123597220222E-4 72-73 0.0012274235483841311 74-75 0.0033905025072337464 76-77 0.003908275357166579 78-79 0.0013826941800985065 80-81 0.006374614358128858 82-83 0.004310639512905276 84-85 0.00714767202565331 86-87 0.003646397600970366 88-89 0.056673664796664226 90-91 5.341979933279739E-6 92-93 1.7688166442489568E-4 94-95 0.0015026999713125965 96-97 0.025659433613202148 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 689.0 20-21 3061.0 22-23 5841.0 24-25 8501.0 26-27 11679.0 28-29 25141.0 30-31 64662.0 32-33 84433.0 34-35 117905.0 36-37 182859.0 38-39 213198.0 40-41 220162.0 42-43 251518.0 44-45 294857.0 46-47 292188.0 48-49 268721.0 50-51 243351.0 52-53 211449.0 54-55 237869.0 56-57 248872.0 58-59 256887.0 60-61 266694.0 62-63 248120.0 64-65 258406.0 66-67 277584.0 68-69 277100.0 70-71 279519.0 72-73 265962.0 74-75 261599.0 76-77 265735.0 78-79 283318.0 80-81 290802.0 82-83 279694.0 84-85 278086.0 86-87 291783.0 88-89 311326.0 90-91 341815.0 92-93 358365.0 94-95 444584.0 96-97 585541.0 98-99 2155044.0 100-101 1.4917144E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.97490848497512 #Duplication Level Percentage of deduplicated Percentage of total 1 89.92392130406309 76.41276983422864 2 6.988479639636946 11.876908356545231 3 1.6926388292650023 4.31495488844727 4 0.6343912473984566 2.1562935276541224 5 0.28196310826239984 1.197989466036828 6 0.15307183157078635 0.7804358927613059 7 0.09848197474374529 0.5857947753888572 8 0.058844135645342535 0.40002200330723553 9 0.039630487469571894 0.30308373413476425 >10 0.12407095106207718 1.6190766665049456 >50 0.0035015559085773964 0.1977775475969618 >100 9.725554209332627E-4 0.127093867255676 >500 1.636229169361096E-5 0.008086724597665839 >1k 1.601726137065957E-5 0.019712715540532624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.8194085844416235E-6 7.638817168883247E-6 2 0.0 2.2916451506649745E-5 0.0 3.8194085844416235E-6 7.638817168883247E-6 3 0.0 2.2916451506649745E-5 0.0 1.1458225753324872E-5 7.638817168883247E-6 4 0.0 5.7291128766624355E-5 0.0 1.5277634337766494E-5 7.638817168883247E-6 5 0.0 7.256876310439085E-5 0.0 1.5277634337766494E-5 7.638817168883247E-6 6 0.0 7.256876310439085E-5 0.0 1.909704292220812E-5 7.638817168883247E-6 7 0.0 8.02075802732741E-5 0.0 1.909704292220812E-5 7.638817168883247E-6 8 7.638817168883247E-6 8.402698885771572E-5 0.0 2.2916451506649745E-5 1.5277634337766494E-5 9 7.638817168883247E-6 1.3367930045545684E-4 0.0 4.201349442885786E-5 1.909704292220812E-5 10-11 1.909704292220812E-5 1.3367930045545684E-4 0.0 6.111053735106598E-5 1.909704292220812E-5 12-13 2.2916451506649745E-5 1.4513752620878172E-4 0.0 6.874935451994923E-5 2.2916451506649745E-5 14-15 2.2916451506649745E-5 1.7951220346875633E-4 0.0 9.166580602659898E-5 3.24649729677538E-5 16-17 2.2916451506649745E-5 1.8524131634541877E-4 0.0 1.1840166611769032E-4 3.819408584441624E-5 18-19 2.2916451506649745E-5 2.081577678520685E-4 0.0 1.604151605465482E-4 4.77426073055203E-5 20-21 2.2916451506649745E-5 2.406227408198223E-4 0.0 3.4756618118418777E-4 5.347172018218273E-5 22-23 2.2916451506649745E-5 2.711780094953553E-4 0.0 8.307213671160532E-4 5.920083305884516E-5 24-25 2.2916451506649745E-5 3.1701091250865474E-4 0.0 0.0024425117897504183 6.683965022772842E-5 26-27 2.2916451506649745E-5 3.3228854684642125E-4 0.0 0.005664182930726928 6.874935451994923E-5 28-29 2.2916451506649745E-5 3.399273640153045E-4 0.0 0.025660696574571047 6.874935451994923E-5 30-31 2.2916451506649745E-5 3.8194085844416237E-4 0.0 0.03850536764404823 7.065905881217005E-5 32-33 2.2916451506649745E-5 3.85760267028604E-4 0.0 0.04559609968106411 8.020758027327409E-5 34-35 2.864556438331218E-5 4.6405814300965733E-4 0.0 0.05506441356189489 1.0312403177992385E-4 36-37 3.437467725997462E-5 5.557239490362563E-4 0.0 0.06762262898753896 1.0694344036436547E-4 38-39 3.628438155219543E-5 5.939180348806725E-4 0.0 0.08841930872982359 1.107628489488071E-4 40-41 3.819408584441624E-5 6.359315293095304E-4 0.0 0.12310335808513798 1.1267255324102791E-4 42-43 3.819408584441624E-5 6.531188679395176E-4 0.0 0.14128565265137233 1.1649196182546952E-4 44-45 4.0103790136637046E-5 7.180488138750253E-4 0.0 0.16324152289903499 1.1840166611769034E-4 46-47 4.201349442885786E-5 7.753399426416496E-4 0.0 0.1889155874036516 1.1840166611769034E-4 48-49 4.583290301329949E-5 7.887078726871953E-4 0.0 0.21115027447797852 1.2222107470213195E-4 50-51 4.583290301329949E-5 9.147483559737689E-4 0.0 0.23628580237218882 1.2604048328657358E-4 52-53 4.965231159774111E-5 9.242968774348729E-4 0.0 0.2618166390548889 1.413181176243401E-4 54-55 5.156201588996192E-5 9.376648074804186E-4 0.0 0.3366694084927758 1.6041516054654818E-4 56-57 5.347172018218273E-5 9.586715546948476E-4 0.0 0.38354882945821234 1.7187338629987307E-4 58-59 5.347172018218273E-5 9.758588933248349E-4 0.0 0.4327027082356838 1.7951220346875633E-4 60-61 5.538142447440355E-5 0.001004504457708147 0.0 0.46262586479049167 1.8142190776097714E-4 62-63 5.7291128766624355E-5 0.0010197820920459135 0.0 0.4773344072491764 1.8715102063763956E-4 64-65 5.7291128766624355E-5 0.0010904411508580836 0.0 0.49145285108156483 1.8715102063763956E-4 66-67 5.7291128766624355E-5 0.001109538193780292 0.0 0.4992559028195791 1.9669954209874363E-4 68-69 6.111053735106598E-5 0.0011420031667480454 0.0 0.506304621362166 2.0433835926762689E-4 70-71 6.49299459355076E-5 0.001155371096793591 0.0 0.5132979584802787 2.1770628931317256E-4 72-73 6.49299459355076E-5 0.0011611002096702536 0.0 0.5189239473251612 2.444421494042639E-4 74-75 6.49299459355076E-5 0.0011725584354235785 0.0 0.5240018510381763 2.444421494042639E-4 76-77 6.49299459355076E-5 0.0012145719298524364 0.0 0.5286443421725652 2.444421494042639E-4 78-79 6.683965022772842E-5 0.0012374883813590861 0.0 0.5328915245184642 2.444421494042639E-4 80-81 6.874935451994923E-5 0.0012432174942357487 0.0 0.535250009319357 2.5208096657314716E-4 82-83 6.874935451994923E-5 0.0012546757199890734 0.0 0.5367013845814448 2.597197837420304E-4 84-85 6.874935451994923E-5 0.0012756824672035024 0.0 0.5380572746289216 2.597197837420304E-4 86-87 6.874935451994923E-5 0.0012890503972490482 0.0 0.5382539741710203 2.673586009109137E-4 88-89 6.874935451994923E-5 0.0013329735959701266 0.0 0.5382883488482803 2.807265309564594E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 37505 0.0 44.913223 1 GTATCAA 65550 0.0 35.07094 1 TCAACGC 81570 0.0 27.697414 4 ATCAACG 82065 0.0 27.545795 3 CAACGCA 82930 0.0 27.24822 5 AACGCAG 84445 0.0 26.843285 6 TATCAAC 85010 0.0 26.797525 2 ACGCAGA 97325 0.0 23.248013 7 CGCAGAG 98500 0.0 22.974918 8 GTACATG 94250 0.0 21.105402 1 TACATGG 94090 0.0 20.81788 2 ACATGGG 94245 0.0 20.226307 3 GCAGAGT 116125 0.0 19.448391 9 AGAGTAC 103945 0.0 18.204334 10-11 GAGTACT 59795 0.0 17.98218 12-13 CATGGGG 61175 0.0 17.797934 4 CAGAGTA 113055 0.0 17.168812 10-11 AGTACTT 65845 0.0 16.475538 12-13 GTACTTT 67920 0.0 15.856288 14-15 ATGGGGG 33595 0.0 14.144924 5 >>END_MODULE