##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139725_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8358586 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43593222585734 34.0 31.0 34.0 31.0 34.0 2 32.5501468789099 34.0 31.0 34.0 31.0 34.0 3 32.63084772950832 34.0 31.0 34.0 31.0 34.0 4 36.16062920211624 37.0 35.0 37.0 35.0 37.0 5 36.07628000716868 37.0 35.0 37.0 35.0 37.0 6 36.101430672604195 37.0 35.0 37.0 35.0 37.0 7 36.01718065711114 37.0 35.0 37.0 35.0 37.0 8 35.99476873241479 37.0 35.0 37.0 35.0 37.0 9 37.693579272857875 39.0 37.0 39.0 35.0 39.0 10-11 37.594335393570155 39.0 37.0 39.0 35.0 39.0 12-13 37.55866434825221 39.0 37.0 39.0 35.0 39.0 14-15 38.820475795786514 40.0 38.0 41.0 35.0 41.0 16-17 38.869875658394854 40.0 38.0 41.0 35.0 41.0 18-19 38.84520055186368 40.0 38.0 41.0 35.0 41.0 20-21 38.81125216347098 40.0 38.0 41.0 35.0 41.0 22-23 38.71636500193054 40.0 38.0 41.0 34.0 41.0 24-25 38.642798083642994 40.0 38.0 41.0 34.0 41.0 26-27 38.51303460223035 40.0 38.0 41.0 34.0 41.0 28-29 38.38247458220872 40.0 38.0 41.0 34.0 41.0 30-31 38.24009509523252 40.0 38.0 41.0 34.0 41.0 32-33 38.468228152041206 40.0 38.0 41.0 34.0 41.0 34-35 38.45702307425586 40.0 38.0 41.0 34.0 41.0 36-37 38.36372886205065 40.0 38.0 41.0 34.0 41.0 38-39 38.25906970818167 40.0 38.0 41.0 34.0 41.0 40-41 38.220568392629666 40.0 38.0 41.0 34.0 41.0 42-43 38.122207612646065 40.0 38.0 41.0 33.0 41.0 44-45 38.1496507948558 40.0 37.5 41.0 33.5 41.0 46-47 38.262814274990845 40.0 38.0 41.0 33.5 41.0 48-49 38.19435545105105 40.0 38.0 41.0 33.0 41.0 50-51 38.095267783524406 40.0 37.0 41.0 33.0 41.0 52-53 37.95245636420642 40.0 37.0 41.0 33.0 41.0 54-55 37.84356955778273 40.0 37.0 41.0 33.0 41.0 56-57 37.70047148402613 39.5 36.0 41.0 33.0 41.0 58-59 37.54592421019342 39.0 36.0 41.0 32.5 41.0 60-61 37.30821644737853 39.0 35.5 41.0 32.0 41.0 62-63 37.06067655413378 39.0 35.0 40.0 32.0 41.0 64-65 36.814601091789825 38.0 35.0 40.0 31.0 41.0 66-67 36.52470281019019 38.0 35.0 40.0 31.0 41.0 68-69 36.19996880175014 37.0 35.0 40.0 31.0 41.0 70-71 35.89231820735206 37.0 34.0 39.0 31.0 41.0 72-73 35.56221830200411 36.0 34.0 39.0 30.0 40.5 74-75 35.16188441430965 36.0 34.0 38.5 30.0 40.0 76-77 34.15542648937097 35.0 32.5 37.0 29.0 39.0 78-79 34.4412032060288 35.0 34.0 37.0 29.5 39.0 80-81 34.313570768876446 35.0 34.0 36.5 30.0 39.0 82-83 34.060646026608424 35.0 34.0 36.0 29.5 37.5 84-85 33.81283183510169 35.0 33.0 36.0 29.0 37.0 86-87 33.596585815616606 35.0 33.0 35.0 29.0 37.0 88-89 33.36203598000816 35.0 33.0 35.0 29.0 36.0 90-91 33.23134610484699 35.0 33.0 35.0 29.0 36.0 92-93 33.13698565009747 35.0 33.0 35.0 29.0 36.0 94-95 33.07846457815954 34.0 33.0 35.0 29.0 35.5 96-97 33.02283651864711 34.0 33.0 35.0 29.0 35.0 98-99 33.09900080383184 34.0 33.0 35.0 29.0 35.0 100-101 32.2463619765904 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 29.0 21 192.0 22 927.0 23 2998.0 24 8041.0 25 17510.0 26 32423.0 27 52611.0 28 78528.0 29 108323.0 30 143963.0 31 186612.0 32 241442.0 33 320137.0 34 442070.0 35 636543.0 36 1018263.0 37 1751553.0 38 2125245.0 39 1140052.0 40 51119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.090082222040905 20.95856882970397 13.696598922353614 25.25475002590151 2 14.731301494310808 22.3766053734796 39.583976635235054 23.30811649697454 3 17.576692056213524 26.575038421699055 30.96341498138794 24.884854540699482 4 12.425175741447179 18.395120897242666 38.5853061749918 30.594397186318357 5 12.80122020638419 38.1072588114784 36.2000941307537 12.891426851383713 6 30.281293989198648 38.36284031772838 18.47826893208971 12.877596760983256 7 26.290427591461047 32.52771461584531 23.749686848947896 17.43217094374575 8 24.624320429316633 36.7156358742974 21.421888821865327 17.238154874520642 9 25.73394590903294 15.969315862754776 21.08167577626168 37.2150624519506 10-11 24.109484546788178 26.694796225103147 29.469745241599476 19.725973986509203 12-13 24.750460185490702 24.278029800734238 29.353397811543726 21.618112202231334 14-15 21.890631009913758 25.769941921987993 26.58150273042626 25.757924337671987 16-17 21.747704800052592 28.751335976643418 27.41900528504494 22.08195393825905 18-19 21.802821329684548 28.177549131721175 28.722647929345385 21.296981609248895 20-21 22.470490403170853 27.48712335965322 28.529571750947312 21.512814486228613 22-23 22.204142329557676 27.40647888346911 28.372054037939414 22.0173247490338 24-25 22.023889491935233 27.511023440493528 28.46815662965028 21.99693043792096 26-27 21.981325732881473 27.68077862726117 28.38086309668127 21.957032543176087 28-29 21.989080051943613 27.719147456678613 28.367933456199623 21.92383903517815 30-31 22.196773715961555 27.61876127336167 28.275450712508853 21.90901429816792 32-33 21.94856088652775 27.75309860716286 28.307181459201736 21.991159047107658 34-35 22.11397722730779 27.75404729137014 28.289473247210356 21.84250223411172 36-37 22.103141858743676 27.664126176214026 28.254120497127555 21.978611467914742 38-39 21.937485964920665 27.81068811183911 28.330284666018095 21.92154125722213 40-41 22.18065523459514 27.65787939573366 28.207773013642303 21.9536923560289 42-43 22.0293078181303 27.764586027926192 28.06176669275921 22.144339461184302 44-45 22.11450865461839 27.825965758074457 27.930398602790106 22.129126984517047 46-47 22.174085832808654 27.79922417868003 27.77802018207114 22.248669806440173 48-49 22.061302195570782 27.902596702746674 27.776738466132283 22.259362635550257 50-51 22.125935352280887 27.97071333465765 27.71242607964432 22.190925233417143 52-53 22.27274279053984 27.87911716456944 27.597551408036786 22.250588636853934 54-55 22.221863831740077 27.796000041671242 27.645910114598582 22.3362260119901 56-57 22.23142526362646 27.905522843479723 27.60266307817914 22.260388814714673 58-59 22.22034369976436 27.944813346995645 27.565477349675522 22.269365603564474 60-61 22.296838707077438 27.91764100958446 27.563142380502548 22.222377902835554 62-63 22.245521649644413 27.964243432567542 27.5636838529911 22.226551064796944 64-65 22.270132005339093 27.898325381818488 27.509484572591557 22.322058040250855 66-67 22.290431909131694 27.947740634701557 27.420296540006234 22.34153091616051 68-69 22.272435003226658 27.91195857888994 27.485479667807223 22.33012675007618 70-71 22.24485405851837 27.730175451891707 27.557780823094074 22.467189666495845 72-73 22.287668757237235 27.784104749686183 27.482586078383875 22.44564041469271 74-75 22.158211346863464 27.927677183267985 27.456657117904705 22.457454351963854 76-77 22.286570747114524 27.8314313379138 27.42487401664929 22.457123898322386 78-79 22.258213139767797 27.83061341102746 27.401197435591527 22.509976013613215 80-81 22.25682182243277 27.850810698239613 27.401751190160777 22.49061628916683 82-83 22.259342335293695 27.834766761611263 27.510727934937616 22.39516296815743 84-85 22.260131547469403 27.824117946166016 27.486067315546897 22.42968319081768 86-87 22.198675866258665 27.840567286824047 27.508869704461254 22.45188714245603 88-89 22.26415354138464 27.823243510497974 27.447961037191575 22.46464191092581 90-91 22.26872835225376 27.847451435914365 27.502021674495747 22.381798537336124 92-93 22.27943863198377 27.825541884986638 27.496845117674113 22.398174365355477 94-95 22.119204773319197 27.864148175144628 27.587153482033788 22.429493569502384 96-97 22.091108760677017 27.900788935779318 27.632279244156415 22.375823059387248 98-99 22.263679951971387 28.437212401341423 27.711460276916906 21.587647369770284 100-101 24.91600967568536 36.277673539281004 28.986829808115193 9.81948697691844 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2110.0 1 1895.0 2 2252.5 3 3014.5 4 3845.0 5 5608.0 6 7096.5 7 8188.5 8 8843.0 9 8733.5 10 8330.0 11 8024.5 12 8985.5 13 11839.5 14 17953.5 15 25786.0 16 31778.5 17 34842.5 18 35851.5 19 35686.5 20 34794.0 21 34182.5 22 35390.5 23 40184.5 24 48436.5 25 60015.0 26 75471.5 27 93184.5 28 112854.5 29 134031.5 30 154542.0 31 174391.0 32 194291.0 33 213959.0 34 232078.0 35 249087.5 36 268273.5 37 285067.5 38 298630.5 39 311538.5 40 323194.0 41 335395.5 42 344866.5 43 351692.5 44 357858.0 45 361245.0 46 363243.0 47 365173.5 48 364173.0 49 359333.5 50 352973.0 51 343486.0 52 328793.0 53 311704.5 54 293105.5 55 272435.0 56 250835.5 57 228189.5 58 203168.5 59 176216.5 60 148614.0 61 121810.5 62 97939.0 63 77068.0 64 58629.5 65 44328.5 66 33777.5 67 25962.5 68 19664.0 69 14380.5 70 10607.5 71 7781.0 72 5514.5 73 3864.0 74 2701.0 75 1852.5 76 1319.0 77 944.5 78 647.5 79 430.0 80 298.0 81 221.0 82 179.5 83 135.0 84 101.5 85 76.0 86 53.5 87 36.0 88 20.5 89 14.5 90 9.5 91 5.0 92 4.0 93 3.5 94 2.5 95 1.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.0338368235967185E-4 3 3.349848885924007E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.1963746021157168E-5 16-17 5.981873010578584E-6 18-19 1.1365558720099309E-4 20-21 0.0 22-23 9.572402571937054E-5 24-25 0.002082476231795163 26-27 0.0031248518389214303 28-29 0.0034203788809394862 30-31 0.005146758807645949 32-33 0.002429996989570561 34-35 0.0065876216475889305 36-37 0.021485624313198077 38-39 0.00956713433334591 40-41 0.003521745698450216 42-43 0.007431302378758645 44-45 0.004460912014559207 46-47 0.0034892242612460664 48-49 0.002214900923542653 50-51 1.241136002638002E-4 52-53 3.961993128187052E-5 54-55 0.002778005568298469 56-57 0.0027718783342823073 58-59 0.004690379811893174 60-61 0.00209470813606142 62-63 0.0011307773504313423 64-65 2.844474785508823E-4 66-67 3.6035958120450915E-5 68-69 1.023291054601568E-4 70-71 1.6313285072209644E-4 72-73 0.001015280039804994 74-75 0.0029051874905829224 76-77 0.003240350734326118 78-79 0.0011537821252776631 80-81 0.006330220496568327 82-83 0.0046969332184366285 84-85 0.007335158954621434 86-87 0.0037257677859257364 88-89 0.05407064914341558 90-91 1.7299596928041374E-5 92-93 2.2925308111732307E-4 94-95 0.001575547928303026 96-97 0.024842125286840967 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 204.0 20-21 732.0 22-23 1535.0 24-25 2781.0 26-27 4529.0 28-29 8693.0 30-31 20899.0 32-33 29214.0 34-35 42534.0 36-37 66081.0 38-39 71218.0 40-41 71105.0 42-43 80447.0 44-45 95400.0 46-47 97141.0 48-49 90599.0 50-51 83283.0 52-53 82756.0 54-55 90315.0 56-57 93646.0 58-59 93712.0 60-61 91025.0 62-63 87285.0 64-65 91835.0 66-67 96598.0 68-69 97682.0 70-71 96094.0 72-73 91369.0 74-75 91423.0 76-77 93561.0 78-79 98661.0 80-81 98436.0 82-83 94098.0 84-85 94079.0 86-87 98350.0 88-89 103777.0 90-91 109338.0 92-93 113441.0 94-95 140093.0 96-97 188861.0 98-99 671786.0 100-101 4583970.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.64462551844446 #Duplication Level Percentage of deduplicated Percentage of total 1 92.06022996166814 81.60644610093952 2 5.791525186101461 10.267751626052068 3 1.2619031794742324 3.355828043550832 4 0.41196903521739364 1.4607536340816285 5 0.1908728462236012 0.8459925987565382 6 0.097324074995717 0.5176353709154602 7 0.05356280830153016 0.3323638558523758 8 0.03251002317957534 0.23054710642795243 9 0.021392701695930483 0.1706713227597194 >10 0.07687914130208208 1.0771348286951978 >50 0.001616914930696676 0.09779563192885622 >100 1.9448437181812878E-4 0.027921139573413543 >500 1.964253784908429E-5 0.009158740466404369 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1963746021157166E-5 2 0.0 2.3927492042314333E-5 0.0 0.0 1.1963746021157166E-5 3 0.0 2.3927492042314333E-5 0.0 1.1963746021157166E-5 1.1963746021157166E-5 4 0.0 9.570996816925733E-5 0.0 1.1963746021157166E-5 2.3927492042314333E-5 5 0.0 1.1963746021157167E-4 0.0 3.58912380634715E-5 2.3927492042314333E-5 6 0.0 1.1963746021157167E-4 0.0 3.58912380634715E-5 2.3927492042314333E-5 7 0.0 1.3160120623272883E-4 0.0 3.58912380634715E-5 2.3927492042314333E-5 8 0.0 1.3160120623272883E-4 0.0 3.58912380634715E-5 2.3927492042314333E-5 9 0.0 2.3927492042314334E-4 0.0 3.58912380634715E-5 3.58912380634715E-5 10-11 0.0 2.3927492042314334E-4 0.0 5.9818730105785835E-5 3.58912380634715E-5 12-13 0.0 2.3927492042314334E-4 0.0 8.374622214810018E-5 3.58912380634715E-5 14-15 0.0 2.7516615848661486E-4 0.0 8.972809515867875E-5 4.7854984084628666E-5 16-17 0.0 2.8114803149719347E-4 0.0 1.1365558720099309E-4 8.374622214810018E-5 18-19 0.0 3.230211425712435E-4 0.0 1.43564952253886E-4 8.374622214810018E-5 20-21 0.0 3.58912380634715E-4 0.0 2.0936555537025042E-4 8.972809515867875E-5 22-23 0.0 4.30694856761658E-4 0.0 2.8712990450777197E-4 1.1963746021157167E-4 24-25 0.0 4.606042218145509E-4 0.0 4.067673647193437E-4 1.3160120623272883E-4 26-27 0.0 4.905135868674439E-4 0.0 6.280966661107513E-4 1.3160120623272883E-4 28-29 0.0 4.905135868674439E-4 0.0 0.001621087585866796 1.3758307924330743E-4 30-31 0.0 5.862235550367011E-4 0.0 0.005090573932002375 1.495468252644646E-4 32-33 0.0 6.280966661107513E-4 0.0 0.01283709948070164 1.6749244429620035E-4 34-35 0.0 7.058610152482728E-4 0.0 0.024758972390784756 1.794561903173575E-4 36-37 0.0 8.135347294386874E-4 0.0 0.040365679075384284 1.9141993633851466E-4 38-39 0.0 8.314803484704231E-4 0.0 0.05985462134384931 1.9141993633851466E-4 40-41 0.0 8.853172055656303E-4 0.0 0.07850610139083333 1.9141993633851466E-4 42-43 0.0 9.152265706185232E-4 0.0 0.09587147874054296 1.9141993633851466E-4 44-45 0.0 0.0010528096498618306 0.0 0.1165867049761766 1.9740180934909327E-4 46-47 0.0 0.0011604833640522453 0.0 0.13107480140779793 2.0936555537025042E-4 48-49 0.0 0.0011604833640522453 0.0 0.1426437438102569 2.2731117440198619E-4 50-51 5.981873010578583E-6 0.0013160120623272884 0.0 0.15358458954660514 2.3927492042314334E-4 52-53 1.1963746021157166E-5 0.0013399395543696028 0.0 0.1627009640147269 2.572205394548791E-4 54-55 1.1963746021157166E-5 0.0013519033003907598 0.0 0.17217026899047277 2.9311177751835057E-4 56-57 1.7945619031735748E-5 0.001363867046411917 0.0 0.18114307850634068 2.990936505289292E-4 58-59 2.3927492042314333E-5 0.001363867046411917 0.0 0.18969117503845745 3.050755235395078E-4 60-61 2.3927492042314333E-5 0.0013758307924330742 0.0 0.19807776099928864 3.1105739655008633E-4 62-63 2.3927492042314333E-5 0.0014057401574859671 0.0 0.20594392400819947 3.1105739655008633E-4 64-65 2.3927492042314333E-5 0.0014954682526446459 0.0 0.21299057041466105 3.1105739655008633E-4 66-67 2.3927492042314333E-5 0.001507431998665803 0.0 0.2208507515505613 3.1105739655008633E-4 68-69 2.3927492042314333E-5 0.0015433232367292745 0.0 0.2286750414483981 3.1105739655008633E-4 70-71 2.3927492042314333E-5 0.0015552869827504317 0.0 0.23663093255246762 3.230211425712435E-4 72-73 2.3927492042314333E-5 0.0015612688557610104 0.0 0.24340839467345315 3.349848885924007E-4 74-75 2.3927492042314333E-5 0.0016031419668350606 0.0 0.24907322841447105 3.349848885924007E-4 76-77 2.3927492042314333E-5 0.0016569788239302677 0.0 0.25446887787001293 3.349848885924007E-4 78-79 2.3927492042314333E-5 0.0016988519350043178 0.0 0.25927232189750754 3.349848885924007E-4 80-81 2.3927492042314333E-5 0.0016988519350043178 0.0 0.2622393309107545 3.409667616029793E-4 82-83 2.9909365052892918E-5 0.0017108156810254748 0.0 0.26396809221081174 3.4694863461355786E-4 84-85 3.58912380634715E-5 0.0017467069190889464 0.0 0.26530204989217077 3.4694863461355786E-4 86-87 3.58912380634715E-5 0.0017825981571524179 0.0 0.26549945170151984 3.4694863461355786E-4 88-89 3.58912380634715E-5 0.0018663443793005181 0.0 0.2655473066856045 3.4694863461355786E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7905 0.0 41.827217 1 GTATCAA 12905 0.0 32.54524 1 TCAACGC 15010 0.0 26.911234 4 ATCAACG 15380 0.0 26.23705 3 CAACGCA 15420 0.0 26.195694 5 AACGCAG 15930 0.0 25.486279 6 TATCAAC 16630 0.0 24.562054 2 GTACATG 20745 0.0 21.912952 1 TACATGG 20915 0.0 21.400156 2 ACGCAGA 19300 0.0 21.036083 7 ACATGGG 20965 0.0 20.91703 3 CGCAGAG 19770 0.0 20.535984 8 CATGGGG 15110 0.0 18.966625 4 AGAGTAC 21135 0.0 16.46265 10-11 GCAGAGT 24550 0.0 16.353037 9 GAGTACT 13455 0.0 15.913518 12-13 CAGAGTA 23440 0.0 15.46739 10-11 ATGGGGG 9080 0.0 15.100928 5 GTGGTAT 4520 0.0 14.575613 1 GAGTACA 14960 0.0 14.340075 1 >>END_MODULE