##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139724_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8587293 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37419498787336 33.0 31.0 34.0 31.0 34.0 2 32.49053432787259 34.0 31.0 34.0 31.0 34.0 3 32.568893829522295 34.0 31.0 34.0 31.0 34.0 4 36.1151862408794 37.0 35.0 37.0 35.0 37.0 5 36.02463209302396 37.0 35.0 37.0 35.0 37.0 6 36.04760138031857 37.0 35.0 37.0 35.0 37.0 7 35.95788428320776 37.0 35.0 37.0 35.0 37.0 8 35.93487924541529 37.0 35.0 37.0 35.0 37.0 9 37.625747252364626 39.0 37.0 39.0 35.0 39.0 10-11 37.51714556612893 39.0 37.0 39.0 35.0 39.0 12-13 37.47224666725591 39.0 37.0 39.0 35.0 39.0 14-15 38.71353178469629 40.0 38.0 41.0 34.5 41.0 16-17 38.755919414884296 40.0 38.0 41.0 35.0 41.0 18-19 38.71664312607011 40.0 38.0 41.0 34.0 41.0 20-21 38.6734012334862 40.0 38.0 41.0 34.0 41.0 22-23 38.5741658637519 40.0 38.0 41.0 34.0 41.0 24-25 38.495115558027926 40.0 38.0 41.0 34.0 41.0 26-27 38.35168091119739 40.0 38.0 41.0 34.0 41.0 28-29 38.21491343379593 40.0 38.0 41.0 34.0 41.0 30-31 38.072712154899634 40.0 37.5 41.0 33.0 41.0 32-33 38.326198904932156 40.0 38.0 41.0 34.0 41.0 34-35 38.319281718310464 40.0 38.0 41.0 34.0 41.0 36-37 38.22001906961529 40.0 38.0 41.0 33.5 41.0 38-39 38.10650896189175 40.0 38.0 41.0 33.0 41.0 40-41 38.065302347480824 40.0 37.5 41.0 33.0 41.0 42-43 37.957374958769805 40.0 37.0 41.0 33.0 41.0 44-45 37.98232985060588 40.0 37.0 41.0 33.0 41.0 46-47 38.09180837004359 40.0 37.0 41.0 33.0 41.0 48-49 38.01634664509275 40.0 37.0 41.0 33.0 41.0 50-51 37.906853611194876 40.0 37.0 41.0 33.0 41.0 52-53 37.7493748858671 40.0 37.0 41.0 33.0 41.0 54-55 37.619436018031806 39.5 36.0 41.0 32.5 41.0 56-57 37.45761056343965 39.0 36.0 41.0 32.0 41.0 58-59 37.282628319621395 39.0 35.5 41.0 32.0 41.0 60-61 37.02335167721333 39.0 35.0 40.0 31.5 41.0 62-63 36.7522031299781 38.0 35.0 40.0 31.0 41.0 64-65 36.48640597059922 38.0 35.0 40.0 31.0 41.0 66-67 36.17957520521872 37.0 35.0 40.0 31.0 41.0 68-69 35.8398308806421 37.0 34.0 39.0 30.0 41.0 70-71 35.523295324878106 36.0 34.0 39.0 30.0 40.5 72-73 35.19346810690186 36.0 34.0 39.0 30.0 40.0 74-75 34.79684466708955 35.0 34.0 37.5 29.5 40.0 76-77 33.810339140906265 35.0 32.5 36.5 28.5 39.0 78-79 34.11678129170663 35.0 33.0 36.5 29.0 39.0 80-81 34.01215549831436 35.0 33.0 36.0 29.0 38.5 82-83 33.78500004874658 35.0 33.0 36.0 29.0 37.0 84-85 33.559840976580716 35.0 33.0 35.5 29.0 37.0 86-87 33.365329680990186 35.0 33.0 35.0 29.0 36.5 88-89 33.1486775505627 35.0 33.0 35.0 29.0 36.0 90-91 33.03477089536255 34.5 33.0 35.0 29.0 36.0 92-93 32.95473611374992 34.0 33.0 35.0 29.0 35.5 94-95 32.90744359649655 34.0 32.5 35.0 29.0 35.0 96-97 32.866183704343925 34.0 32.0 35.0 29.0 35.0 98-99 32.95894776231705 34.0 32.0 35.0 29.0 35.0 100-101 32.08409373625775 33.5 30.5 35.0 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 7.0 20 41.0 21 238.0 22 1087.0 23 3623.0 24 9506.0 25 20719.0 26 37549.0 27 60371.0 28 88474.0 29 121644.0 30 160222.0 31 205847.0 32 265442.0 33 351364.0 34 484486.0 35 692545.0 36 1106570.0 37 1827833.0 38 2012910.0 39 1094193.0 40 42621.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.00647316913491 20.257990498286247 12.528499959183877 26.20703637339497 2 15.501873004604954 22.150806449359003 38.23727721679248 24.11004332924356 3 18.24748726894578 25.862678127041537 30.271145544509487 25.618689059503197 4 12.852175883599173 17.356936580596468 37.32901625692753 32.46187127887683 5 13.186087862612816 37.791513577095834 35.7250299949006 13.297368565390746 6 31.840918901917053 37.10418405427647 17.824790652886772 13.2301063909197 7 27.38782757267046 31.721277007783478 23.077237494982413 17.813657924563657 8 25.495275402853963 36.106046457247935 20.955160141851454 17.443517998046648 9 26.36352340603727 15.083402883772571 20.20102260398009 38.35205110621007 10-11 25.009650887654583 26.012958914992186 28.849062213202693 20.128327984150534 12-13 25.35849190192998 23.585174047281257 28.75465527960907 22.301678771179695 14-15 22.439515558515485 24.967315070608414 25.79227837975911 26.800890991116987 16-17 22.60821121537565 27.87187322102668 26.66368668165044 22.856228881947235 18-19 22.6269717082939 27.451044782828383 27.81536240724224 22.106621101635476 20-21 23.229604374867385 26.84223207861867 27.510688998756937 22.417474547757006 22-23 22.961030254543573 26.755249322815487 27.42941726550583 22.85430315713511 24-25 22.79882744397162 26.828143208691973 27.56555172799049 22.807477619345917 26-27 22.814388572386274 26.94861422281595 27.481425244278622 22.755571960519152 28-29 22.7411475702403 27.042302232455818 27.47080684049005 22.745743356813836 30-31 22.96902710823448 26.936734908072673 27.328950988534594 22.765286995158252 32-33 22.74582291377886 27.102756391402792 27.390721917395037 22.760698777423304 34-35 22.86682852653514 27.089397432354968 27.399167998642593 22.6446060424673 36-37 22.861883407805593 27.006470287808064 27.36985456616309 22.76179173822325 38-39 22.707475513798574 27.138911961887864 27.44839685566225 22.705215668651313 40-41 22.952470170761835 26.908997355322168 27.378368923957456 22.76016354995854 42-43 22.784060993552888 27.05847763492818 27.250551315234073 22.90691005628486 44-45 22.830242035273105 27.114287740829635 27.14715669029626 22.908313533601003 46-47 22.93976797022127 27.05102888631159 26.97263569359726 23.036567449869878 48-49 22.79693742848254 27.164295682186417 27.003527111725333 23.035239777605707 50-51 22.822205820749637 27.223748213338013 26.987164180010186 22.966881785902167 52-53 22.988725597638503 27.114475846809118 26.876970346817647 23.019828208734737 54-55 22.898415832325465 27.01392585653945 26.92522115577311 23.162437155361975 56-57 22.932804041871844 27.17074144453865 26.84434623772415 23.05210827586536 58-59 22.932829987839423 27.21365820004792 26.845294574620933 23.008217237491728 60-61 23.029934533720393 27.154551778193543 26.859251826013963 22.956261862072104 62-63 23.016402214127137 27.247781014735907 26.80287744633909 22.93293932479787 64-65 22.940057062719532 27.206612114474936 26.817169102434523 23.03616172037101 66-67 23.01894551622493 27.229243583430247 26.647571188988778 23.104239711356048 68-69 22.977812804165147 27.173711141620654 26.76684939288535 23.081626661328844 70-71 22.95573644347804 26.96801877862358 26.826613660814402 23.249631117083975 72-73 22.99366479073604 27.018091291202445 26.77177229795788 23.216471620103636 74-75 22.778633878869982 27.20571383387294 26.792908888398802 23.22274339885827 76-77 23.00203287628926 27.092862931346723 26.725912597304692 23.17919159505933 78-79 22.928156822461144 27.081730929606707 26.690059433450163 23.30005281448199 80-81 22.989833628262208 27.117505204830316 26.663877864099018 23.22878330280846 82-83 22.966415538066116 27.0992367359531 26.789172351139023 23.145175374841763 84-85 22.996355770781584 27.07261117458124 26.736817153164367 23.19421590147281 86-87 22.856326030144416 27.097907669616315 26.815479392999386 23.230286907239883 88-89 22.943011354752375 27.07173348870159 26.77456549444579 23.210689662100247 90-91 22.944294624074434 27.097024788439615 26.806666139146884 23.152014448339063 92-93 22.997212344869354 27.05798437408797 26.80123744824425 23.143565832798423 94-95 22.80140396976197 27.08835282597474 26.879218820457368 23.231024383805917 96-97 22.741007041507324 27.106099863385207 26.95406655477594 23.198826540331527 98-99 22.89746626683477 27.727313998833065 27.014367305005948 22.360852429326215 100-101 25.825927982253717 35.64716264845858 28.1862012913192 10.340708077968499 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1879.0 1 1768.5 2 2239.0 3 3002.5 4 3777.5 5 5462.0 6 6967.0 7 8072.5 8 8517.5 9 8144.0 10 7604.0 11 7166.0 12 7850.5 13 10179.0 14 15141.5 15 21287.5 16 25752.0 17 27836.0 18 28363.0 19 28317.5 20 27884.0 21 27786.0 22 29244.5 23 33303.5 24 39958.5 25 49575.5 26 62308.5 27 76129.5 28 90600.0 29 106086.5 30 121863.5 31 138923.5 32 158744.5 33 179463.5 34 199916.5 35 220455.0 36 243870.0 37 265714.0 38 283602.0 39 298866.5 40 313687.5 41 330463.5 42 342989.0 43 354550.0 44 368112.0 45 380305.5 46 389904.5 47 397254.0 48 404053.0 49 406506.0 50 404396.5 51 400940.0 52 392003.0 53 378111.0 54 361966.5 55 341508.0 56 318073.0 57 291825.0 58 263244.5 59 231056.5 60 196770.0 61 163471.5 62 132092.5 63 104222.0 64 79118.5 65 59368.0 66 44662.0 67 34242.5 68 26354.0 69 19206.0 70 13853.5 71 10062.0 72 7091.0 73 4957.0 74 3475.0 75 2397.5 76 1661.0 77 1153.0 78 822.0 79 579.5 80 418.0 81 296.5 82 224.0 83 168.5 84 115.0 85 76.5 86 58.0 87 51.5 88 38.5 89 26.5 90 19.0 91 16.5 92 14.0 93 8.5 94 3.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.445473794826845E-4 3 2.67837606100083E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.329022661739852E-5 16-17 1.7467669963048892E-5 18-19 6.987067985219557E-5 20-21 0.0 22-23 1.1646966017763719E-4 24-25 0.00205036989954469 26-27 0.0031059427757140446 28-29 0.003277598222678624 30-31 0.004943655764483772 32-33 0.0024626365268100203 34-35 0.0062917543025172076 36-37 0.0207749131619311 38-39 0.00871492967549234 40-41 0.0033490378783451397 42-43 0.008035064950006351 44-45 0.0048192254637466955 46-47 0.003857004873646028 48-49 0.0025542434359606264 50-51 7.746687951982929E-5 52-53 4.5758339228532707E-5 54-55 0.0029867571426707663 56-57 0.0027142874515064665 58-59 0.00456230948607118 60-61 0.001834686570454318 62-63 0.0014402058834026177 64-65 2.921972154460579E-4 66-67 5.066262735951235E-5 68-69 1.029898315932343E-4 70-71 1.7950474640466952E-4 72-73 9.198013776344138E-4 74-75 0.0026253763940362568 76-77 0.0030208187768445845 78-79 0.0011332081377751263 80-81 0.0065571564659413 82-83 0.0042853532334768815 84-85 0.007348189807530455 86-87 0.003837984948245458 88-89 0.052374400747891424 90-91 0.0 92-93 1.2748545413733553E-4 94-95 0.0014819419777773945 96-97 0.0229639936872548 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 301.0 20-21 760.0 22-23 1561.0 24-25 3301.0 26-27 5408.0 28-29 13351.0 30-31 27016.0 32-33 36666.0 34-35 52825.0 36-37 81737.0 38-39 87554.0 40-41 84253.0 42-43 94089.0 44-45 110448.0 46-47 111283.0 48-49 106730.0 50-51 97498.0 52-53 96492.0 54-55 106363.0 56-57 110412.0 58-59 110012.0 60-61 107075.0 62-63 100722.0 64-65 105304.0 66-67 111353.0 68-69 112111.0 70-71 109406.0 72-73 102559.0 74-75 102571.0 76-77 104954.0 78-79 111452.0 80-81 111534.0 82-83 104483.0 84-85 102958.0 86-87 107567.0 88-89 114419.0 90-91 119900.0 92-93 122912.0 94-95 149419.0 96-97 197245.0 98-99 671433.0 100-101 4379856.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.11742578182371 #Duplication Level Percentage of deduplicated Percentage of total 1 91.44744677712215 79.66666157543213 2 6.075445322999481 10.585543140358704 3 1.3728378680130333 3.5879430323130754 4 0.49990196549080457 1.7420068950733183 5 0.22243188790847726 0.968884674318885 6 0.12718886624069797 0.6648219968998985 7 0.07163775554788727 0.43686277964836495 8 0.040607107162427415 0.2830069315549866 9 0.029199340809745584 0.22893942652840682 >10 0.10908276297907957 1.5241949590049495 >50 0.0033468777834288663 0.1949136784929972 >100 8.519902219745025E-4 0.1024497339496387 >500 2.1477720864319234E-5 0.013771176424730023 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.329022661739852E-5 2 0.0 3.4935339926097785E-5 0.0 0.0 2.329022661739852E-5 3 0.0 3.4935339926097785E-5 0.0 0.0 2.329022661739852E-5 4 0.0 8.151579316089483E-5 0.0 0.0 3.4935339926097785E-5 5 0.0 8.151579316089483E-5 0.0 0.0 3.4935339926097785E-5 6 3.4935339926097785E-5 8.151579316089483E-5 0.0 0.0 5.8225566543496306E-5 7 3.4935339926097785E-5 8.151579316089483E-5 0.0 0.0 5.8225566543496306E-5 8 3.4935339926097785E-5 9.316090646959408E-5 0.0 0.0 5.8225566543496306E-5 9 3.4935339926097785E-5 2.2125715286528595E-4 0.0 1.164511330869926E-5 6.987067985219557E-5 10-11 3.4935339926097785E-5 2.2125715286528595E-4 0.0 2.329022661739852E-5 6.987067985219557E-5 12-13 3.4935339926097785E-5 2.2125715286528595E-4 0.0 2.329022661739852E-5 6.987067985219557E-5 14-15 3.4935339926097785E-5 2.853052760631319E-4 0.0 2.329022661739852E-5 1.5720902966744E-4 16-17 6.987067985219557E-5 3.085955026805304E-4 0.0 2.329022661739852E-5 1.746766996304889E-4 18-19 6.987067985219557E-5 3.2606317264357925E-4 0.0 2.329022661739852E-5 1.8632181293918817E-4 20-21 6.987067985219557E-5 3.3770828595227855E-4 0.0 3.4935339926097785E-5 1.921443695935378E-4 22-23 6.987067985219557E-5 3.493533992609778E-4 0.0 8.151579316089483E-5 2.329022661739852E-4 24-25 6.987067985219557E-5 3.7264362587837634E-4 0.0 1.5720902966744E-4 2.853052760631319E-4 26-27 6.987067985219557E-5 3.7846618253272596E-4 0.0 3.260631726435793E-4 2.911278327174815E-4 28-29 6.987067985219557E-5 4.017564091501245E-4 0.0 0.0015022196168222048 2.911278327174815E-4 30-31 6.987067985219557E-5 4.1922407911317337E-4 0.0 0.006247603290117153 2.911278327174815E-4 32-33 6.987067985219557E-5 4.2504663576752304E-4 0.0 0.014585504419145823 2.911278327174815E-4 34-35 6.987067985219557E-5 5.065624289284179E-4 0.0 0.02645187488071037 3.0277294602618077E-4 36-37 6.987067985219557E-5 5.589654388175646E-4 0.0 0.04298211322240897 3.0277294602618077E-4 38-39 6.987067985219557E-5 5.880782220893127E-4 0.0 0.0644673472769591 3.0277294602618077E-4 40-41 6.987067985219557E-5 6.987067985219556E-4 0.0 0.0855857602622852 3.0277294602618077E-4 42-43 8.151579316089483E-5 7.39464695102403E-4 0.0 0.10175500009141414 3.0277294602618077E-4 44-45 8.733834981524446E-5 7.918677049915496E-4 0.0 0.12286759052008589 3.085955026805304E-4 46-47 9.316090646959408E-5 8.268030449176475E-4 0.0 0.13922897471880835 3.2024061598922963E-4 48-49 9.316090646959408E-5 8.268030449176475E-4 0.0 0.15209682492492105 3.260631726435793E-4 50-51 1.2227368974134225E-4 8.908511681154934E-4 0.0 0.16359637431726157 3.3188572929792893E-4 52-53 1.3974135970439114E-4 8.966737247698431E-4 0.0 0.17401292817189307 3.7264362587837634E-4 54-55 1.3974135970439114E-4 8.966737247698431E-4 0.0 0.1839578549375222 4.075789658044741E-4 56-57 1.3974135970439114E-4 9.083188380785423E-4 0.0 0.19428707044233845 4.075789658044741E-4 58-59 1.3974135970439114E-4 9.083188380785423E-4 0.0 0.20476184986351345 4.075789658044741E-4 60-61 1.4556391635874076E-4 9.257865080415913E-4 0.0 0.21507359769836665 4.075789658044741E-4 62-63 1.5138647301309038E-4 9.548992913133394E-4 0.0 0.22441297857194345 4.3086919242187266E-4 64-65 1.5138647301309038E-4 0.0010829955377090312 0.0 0.2342705669877574 4.3086919242187266E-4 66-67 1.5138647301309038E-4 0.0010946406510177304 0.0 0.24381373734423642 4.3086919242187266E-4 68-69 1.5138647301309038E-4 0.0011528662175612269 0.0 0.2532113437843567 4.3086919242187266E-4 70-71 1.5138647301309038E-4 0.0011878015574873246 0.0 0.2629117231705032 4.425143057305719E-4 72-73 1.7467669963048892E-4 0.0011878015574873246 0.0 0.2700560001853902 5.123849855827675E-4 74-75 1.8632181293918817E-4 0.0011994466707960238 0.0 0.2762803132488899 5.182075422371171E-4 76-77 1.8632181293918817E-4 0.0012285594540677718 0.0 0.2822018533663635 5.240300988914667E-4 78-79 1.8632181293918817E-4 0.0012460271240308208 0.0 0.2874130415720064 5.240300988914667E-4 80-81 1.8632181293918817E-4 0.0012460271240308208 0.0 0.29069696352505964 5.589654388175646E-4 82-83 1.8632181293918817E-4 0.0012460271240308208 0.0 0.2924961335312537 6.055458920523615E-4 84-85 1.9796692624788744E-4 0.0012460271240308208 0.0 0.29394595013818675 6.055458920523615E-4 86-87 1.9796692624788744E-4 0.00125767223733952 0.0 0.2941380945077803 6.055458920523615E-4 88-89 2.0378948290223706E-4 0.001292607577265618 0.0 0.294167207291052 6.055458920523615E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6930 0.0 37.86929 1 GTATCAA 10855 0.0 31.121006 1 TCAACGC 12425 0.0 26.020454 4 ATCAACG 12810 0.0 25.332973 3 CAACGCA 12820 0.0 25.281622 5 GTACATG 22160 0.0 24.867846 1 AACGCAG 13410 0.0 24.259491 6 TACATGG 22385 0.0 24.023603 2 TATCAAC 14005 0.0 23.545593 2 ACATGGG 22745 0.0 23.18255 3 CATGGGG 17210 0.0 20.261524 4 ACGCAGA 16810 0.0 19.280807 7 CGCAGAG 17185 0.0 18.930447 8 GAGTACA 15365 0.0 16.266665 1 ATGGGGG 10355 0.0 15.844598 5 AGTACAT 15875 0.0 15.007666 2 GCAGAGT 21800 0.0 14.978399 9 AGAGTAC 18360 0.0 14.831654 10-11 TATACTG 3870 0.0 14.2707405 5 CAGAGTA 20765 0.0 14.074822 10-11 >>END_MODULE