##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139722_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8262202 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.446404118417824 34.0 31.0 34.0 31.0 34.0 2 32.55429182196223 34.0 31.0 34.0 31.0 34.0 3 32.63552137795711 34.0 31.0 34.0 31.0 34.0 4 36.158891055919476 37.0 35.0 37.0 35.0 37.0 5 36.075353156458775 37.0 35.0 37.0 35.0 37.0 6 36.09909041197492 37.0 35.0 37.0 35.0 37.0 7 36.0139242540911 37.0 35.0 37.0 35.0 37.0 8 35.990953017125456 37.0 35.0 37.0 35.0 37.0 9 37.697560650296374 39.0 37.0 39.0 35.0 39.0 10-11 37.59429943736549 39.0 37.0 39.0 35.0 39.0 12-13 37.55143550109281 39.0 37.0 39.0 35.0 39.0 14-15 38.81642750927658 40.0 38.0 41.0 35.0 41.0 16-17 38.860805751299715 40.0 38.0 41.0 35.0 41.0 18-19 38.824693526011586 40.0 38.0 41.0 35.0 41.0 20-21 38.782880291209736 40.0 38.0 41.0 34.5 41.0 22-23 38.68522581143628 40.0 38.0 41.0 34.0 41.0 24-25 38.608923337525184 40.0 38.0 41.0 34.0 41.0 26-27 38.47244859708951 40.0 38.0 41.0 34.0 41.0 28-29 38.340234275266155 40.0 38.0 41.0 34.0 41.0 30-31 38.19979672732742 40.0 38.0 41.0 34.0 41.0 32-33 38.44904219168229 40.0 38.0 41.0 34.0 41.0 34-35 38.44421173854663 40.0 38.0 41.0 34.0 41.0 36-37 38.34750077545813 40.0 38.0 41.0 34.0 41.0 38-39 38.237603630706914 40.0 38.0 41.0 34.0 41.0 40-41 38.19650163606724 40.0 38.0 41.0 33.5 41.0 42-43 38.09314103993178 40.0 37.5 41.0 33.0 41.0 44-45 38.11594421244415 40.0 37.5 41.0 33.0 41.0 46-47 38.217792331445 40.0 38.0 41.0 33.0 41.0 48-49 38.14233314362108 40.0 37.0 41.0 33.0 41.0 50-51 38.03251334546348 40.0 37.0 41.0 33.0 41.0 52-53 37.87967483670237 40.0 37.0 41.0 33.0 41.0 54-55 37.752220864321856 40.0 36.5 41.0 33.0 41.0 56-57 37.59324365318851 39.0 36.0 41.0 33.0 41.0 58-59 37.422909507050036 39.0 36.0 41.0 32.0 41.0 60-61 37.16913297136027 39.0 35.0 40.5 32.0 41.0 62-63 36.90569674132045 38.5 35.0 40.0 31.5 41.0 64-65 36.640810187954884 38.0 35.0 40.0 31.0 41.0 66-67 36.33860950814183 37.0 35.0 40.0 31.0 41.0 68-69 36.006194859299406 37.0 34.5 39.5 31.0 41.0 70-71 35.690876867529866 36.0 34.0 39.0 30.5 41.0 72-73 35.363168061428226 36.0 34.0 39.0 30.0 40.0 74-75 34.97061034472866 35.0 34.0 38.0 30.0 40.0 76-77 33.9864788108795 35.0 32.5 37.0 29.0 39.0 78-79 34.279508283491595 35.0 33.5 37.0 29.0 39.0 80-81 34.17021041548736 35.0 34.0 36.0 30.0 39.0 82-83 33.93856675365568 35.0 33.5 36.0 29.0 37.5 84-85 33.712189924040885 35.0 33.0 35.5 29.0 37.0 86-87 33.52050902439165 35.0 33.0 35.0 29.0 37.0 88-89 33.30405872983113 35.0 33.0 35.0 29.0 36.0 90-91 33.18910049593673 35.0 33.0 35.0 29.0 36.0 92-93 33.10974636408276 35.0 33.0 35.0 29.0 36.0 94-95 33.064240533230674 34.0 33.0 35.0 29.0 35.0 96-97 33.01882018805355 34.0 33.0 35.0 29.0 35.0 98-99 33.09661317286718 34.0 33.0 35.0 29.0 35.0 100-101 32.22287864146068 33.5 31.0 35.0 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 4.0 20 45.0 21 215.0 22 926.0 23 3255.0 24 8401.0 25 18276.0 26 33753.0 27 54434.0 28 79667.0 29 109534.0 30 144852.0 31 186875.0 32 241921.0 33 319233.0 34 443080.0 35 638093.0 36 1035351.0 37 1759210.0 38 2038078.0 39 1099034.0 40 47962.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.699016799637675 19.95650796240518 12.1563355628439 26.18813967511324 2 15.56572396284182 22.15602106559615 38.139563931702384 24.138691039859637 3 18.281007195794526 25.90296007582496 30.252099111288572 25.563933617091937 4 12.720955019013092 17.36821491413548 37.53092698532426 32.379903081527175 5 13.118597197212075 37.8673506167 35.77294527536364 13.241106910724284 6 31.617588144177546 37.242577705071845 17.97699935198873 13.16283479876188 7 27.395360219951048 31.81472687305394 23.12499742804642 17.66491547894859 8 25.668568742328013 35.868113609422764 21.112930911154194 17.350386737095025 9 26.493954033077383 15.03099294836897 20.16462439432006 38.31042862423359 10-11 24.995939339173745 26.051184659973213 28.91007143132061 20.042804569532432 12-13 25.404075087972917 23.566707761441805 28.8535489691489 22.17566818143638 14-15 22.41347205263295 24.990981518785464 25.867860505200763 26.72768592338082 16-17 22.560439853712115 27.88597566883354 26.746945109000308 22.806639368454036 18-19 22.58029845955519 27.440013947873272 27.914185963857168 22.06550162871437 20-21 23.2272898734466 26.85659873816374 27.616156360165643 22.299955028224012 22-23 22.902841451960608 26.781307835603414 27.561102299315714 22.75474841312026 24-25 22.73735135876001 26.845365890040956 27.678968823418593 22.738313927780442 26-27 22.72064955333216 27.038680932421773 27.61124908931358 22.62942042493249 28-29 22.68437411389992 27.070485797522036 27.597478053503522 22.64766203507452 30-31 22.915732054675885 27.0236950732668 27.45692206290462 22.603650809152693 32-33 22.668136849975458 27.17655429651315 27.49339750242478 22.661911351086612 34-35 22.80860888371486 27.116941647461047 27.513081110981414 22.561368357842685 36-37 22.841312926320708 27.045394767117482 27.489366423857795 22.623925882704015 38-39 22.622804244940667 27.19403967407432 27.57764192862313 22.60551415236188 40-41 22.870637173315934 27.03408508164295 27.47612060724191 22.619157137799206 42-43 22.686191626599257 27.14666786631053 27.349378696000983 22.817761811089234 44-45 22.761791325686623 27.22673198682021 27.267489185943216 22.74398750154996 46-47 22.874211243257577 27.114216556227788 27.11423588080421 22.89733631971043 48-49 22.71054511426736 27.23412531684426 27.13637597713479 22.918953591753585 50-51 22.727593308831306 27.32367964796462 27.116984613098815 22.83174243010526 52-53 22.87312304168353 27.273308294101955 26.9664956510914 22.887073013123114 54-55 22.848704707139262 27.106374689268222 27.030121036558285 23.01479956703423 56-57 22.82294445997572 27.303501703911635 27.015342590459955 22.858211245652686 58-59 22.8049544589111 27.355811627282815 26.975429534049095 22.863804379756985 60-61 22.878527901002162 27.290238224230244 27.018032982124502 22.81320089264309 62-63 22.856804205374807 27.382661082421873 26.9818464528447 22.778688259358624 64-65 22.81291347452473 27.342553308005712 26.95097121404537 22.893562003424183 66-67 22.86713395389711 27.381415077175113 26.811752074943847 22.939698893983934 68-69 22.854954232452148 27.34210069426349 26.86490435971741 22.938040713566952 70-71 22.822715764742547 27.107882182166964 27.004448539228616 23.064953513861877 72-73 22.87606084973701 27.16710381971213 26.94431173711748 23.012523593433375 74-75 22.65727824343375 27.356357561381405 26.934661716588693 23.051702478596155 76-77 22.869640946835226 27.27603143566355 26.88477734101727 22.969550276483954 78-79 22.82644350348114 27.258196471720563 26.812779307084817 23.10258071771348 80-81 22.851536349527297 27.27463466896065 26.79729441322749 23.076534568284565 82-83 22.81296538610102 27.231130905279464 26.95291831167237 23.002985396947146 84-85 22.838115415041234 27.24869880524348 26.88283645178704 23.03034932792824 86-87 22.710410400217576 27.279108992016 26.954844947029965 23.055635660736463 88-89 22.80939075178528 27.24277069935263 26.8918872037676 23.055951345094492 90-91 22.802250936378687 27.28357068215706 26.952343052300904 22.96183532916335 92-93 22.825515110469652 27.255243190254635 26.94273012034225 22.976511578933465 94-95 22.65903082361047 27.28314012722297 27.050519551192153 23.00730949797441 96-97 22.614898188102607 27.314240387272058 27.090093113796442 22.980768310828893 98-99 22.79808973559566 27.945570937619145 27.114426144552617 22.141913182232578 100-101 25.67438519236227 35.81941536204966 28.293530912998527 10.21266853258954 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1895.0 1 1733.0 2 2145.5 3 2933.0 4 3793.5 5 5692.0 6 7313.0 7 8388.0 8 8916.5 9 8640.5 10 7946.0 11 7232.5 12 7881.5 13 10142.0 14 15014.0 15 21191.5 16 25833.5 17 28126.5 18 28357.0 19 27593.5 20 26804.0 21 26540.0 22 27785.5 23 31818.5 24 38463.5 25 47651.0 26 59934.0 27 73543.5 28 87246.5 29 101908.5 30 116840.0 31 132980.5 32 152016.5 33 171974.5 34 191092.5 35 210814.5 36 231925.0 37 250083.0 38 266167.5 39 281380.0 40 295737.5 41 309299.0 42 320613.5 43 333170.5 44 345927.5 45 356070.5 46 364251.0 47 371115.0 48 375556.0 49 376109.5 50 374279.5 51 371372.0 52 363583.0 53 350957.5 54 336635.0 55 318333.0 56 297785.0 57 275113.0 58 247385.5 59 217717.5 60 186479.0 61 154754.5 62 125893.0 63 99103.0 64 74943.0 65 56294.0 66 42333.0 67 32277.0 68 24624.5 69 17751.5 70 12698.5 71 9100.5 72 6247.5 73 4162.0 74 2801.5 75 1934.0 76 1364.0 77 958.5 78 670.5 79 490.0 80 360.0 81 246.5 82 185.0 83 134.5 84 91.5 85 63.0 86 47.0 87 38.5 88 27.0 89 18.0 90 13.0 91 9.5 92 8.0 93 4.5 94 1.5 95 1.0 96 1.0 97 1.0 98 1.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.2103310957538923E-4 3 1.8154966436308384E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.8154966436308384E-5 16-17 6.051655478769462E-6 18-19 1.270847650541587E-4 20-21 0.0 22-23 1.271027408374509E-4 24-25 0.0019190473195297936 26-27 0.003185408455357893 28-29 0.0030784354445724366 30-31 0.00494051624510326 32-33 0.0023550452889814 34-35 0.006376526174815396 36-37 0.021026493381660894 38-39 0.009121054222964511 40-41 0.0035223201747820237 42-43 0.007849994295208801 44-45 0.0045637323310519975 46-47 0.0038067966328078624 48-49 0.0023993392428363425 50-51 1.1875598356971382E-4 52-53 4.0028596429289085E-5 54-55 0.0027741331188363707 56-57 0.0030430952203642017 58-59 0.004811484444865969 60-61 0.002242665552129847 62-63 0.001425453147992114 64-65 3.2510722939501084E-4 66-67 6.597474794530811E-5 68-69 7.445019646662345E-5 70-71 1.2859219458994484E-4 72-73 9.911333517679014E-4 74-75 0.002878413699189855 76-77 0.0033278231448990456 78-79 0.0011761007940935895 80-81 0.006312866827778679 82-83 0.004322242719962312 84-85 0.007035972320875305 86-87 0.0037481774055547817 88-89 0.05679588155057861 90-91 0.0 92-93 1.9260886413508303E-4 94-95 0.0014169675767789981 96-97 0.0248786597716226 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 230.0 20-21 692.0 22-23 1297.0 24-25 2702.0 26-27 4321.0 28-29 10405.0 30-31 19975.0 32-33 27514.0 34-35 39931.0 36-37 62935.0 38-39 69347.0 40-41 68696.0 42-43 76728.0 44-45 91133.0 46-47 94328.0 48-49 91666.0 50-51 85094.0 52-53 84707.0 54-55 93999.0 56-57 99646.0 58-59 99788.0 60-61 98442.0 62-63 94046.0 64-65 97564.0 66-67 104689.0 68-69 105978.0 70-71 103990.0 72-73 98273.0 74-75 98565.0 76-77 101647.0 78-79 108160.0 80-81 107801.0 82-83 101638.0 84-85 100650.0 86-87 106450.0 88-89 111829.0 90-91 116487.0 92-93 120338.0 94-95 144402.0 96-97 190318.0 98-99 654205.0 100-101 4371596.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.60810984673026 #Duplication Level Percentage of deduplicated Percentage of total 1 91.69608012440096 80.33320260053098 2 5.904928130578284 10.346391846014997 3 1.3602460672990975 3.5750576064756645 4 0.46390183301413407 1.6256625097920707 5 0.21804270829803413 0.9551154769926369 6 0.11468309628001971 0.6028301577877865 7 0.06649119243224552 0.4077617383310972 8 0.04464857844578306 0.3129262051982812 9 0.029194669548118425 0.23019208350394949 >10 0.0989182487091272 1.368221701280759 >50 0.0022843995069829473 0.1382753435833161 >100 5.38092448675912E-4 0.07237184001453935 >500 4.2859038511095996E-5 0.03199089049386173 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.630993287261677E-5 2 0.0 2.4206621915077845E-5 0.0 0.0 3.630993287261677E-5 3 0.0 2.4206621915077845E-5 0.0 0.0 3.630993287261677E-5 4 0.0 1.089297986178503E-4 0.0 0.0 3.630993287261677E-5 5 0.0 1.3313642053292815E-4 0.0 0.0 3.630993287261677E-5 6 3.630993287261677E-5 1.3313642053292815E-4 0.0 0.0 4.841324383015569E-5 7 3.630993287261677E-5 1.3313642053292815E-4 0.0 1.2103310957538923E-5 4.841324383015569E-5 8 3.630993287261677E-5 1.57343042448006E-4 0.0 1.2103310957538923E-5 7.261986574523354E-5 9 3.630993287261677E-5 2.9047946298093414E-4 0.0 6.051655478769461E-5 7.261986574523354E-5 10-11 7.261986574523354E-5 2.9047946298093414E-4 0.0 7.8671521224003E-5 7.261986574523354E-5 12-13 7.261986574523354E-5 3.0258277393847307E-4 0.0 8.472317670277246E-5 7.261986574523354E-5 14-15 7.261986574523354E-5 4.236158835138623E-4 0.0 8.472317670277246E-5 1.1498145409661977E-4 16-17 1.2103310957538923E-4 4.357191944714012E-4 0.0 8.472317670277246E-5 1.2103310957538923E-4 18-19 1.2103310957538923E-4 4.4782250542894014E-4 0.0 1.1498145409661977E-4 1.2103310957538923E-4 20-21 1.2103310957538923E-4 4.5992581638647906E-4 0.0 1.4523973149046707E-4 1.2103310957538923E-4 22-23 1.4523973149046707E-4 5.143907156954042E-4 0.0 2.1180794175693115E-4 1.5129138696923653E-4 24-25 1.4523973149046707E-4 5.870105814406377E-4 0.0 2.4206621915077845E-4 1.9365297532062276E-4 26-27 1.4523973149046707E-4 6.051655478769461E-4 0.0 3.267893958535509E-4 1.9970463079939222E-4 28-29 1.5129138696923653E-4 6.112172033557156E-4 0.0 8.653867334640329E-4 2.0575628627816169E-4 30-31 1.57343042448006E-4 6.414754807495628E-4 0.0 0.002886639663373033 2.0575628627816169E-4 32-33 1.57343042448006E-4 6.414754807495628E-4 0.0 0.005888260780842686 2.178595972357006E-4 34-35 1.57343042448006E-4 7.927668677187995E-4 0.0 0.010487518944707477 2.2996290819323953E-4 36-37 1.6339469792677546E-4 9.501099101668054E-4 0.0 0.016914377063160645 2.2996290819323953E-4 38-39 1.6944635340554492E-4 0.0010106264649545 0.0 0.02551377949849205 2.4206621915077845E-4 40-41 1.6944635340554492E-4 0.0011861244738388143 0.0 0.03486963886866963 2.541695301083174E-4 42-43 1.6944635340554492E-4 0.0012284860621902005 0.0 0.04399553533065398 2.6022118558708686E-4 44-45 1.6944635340554492E-4 0.001428190692989593 0.0 0.05482194698217255 2.662728410658563E-4 46-47 1.8154966436308384E-4 0.001585533735437599 0.0 0.06603566458433235 2.7232449654462573E-4 48-49 1.9365297532062276E-4 0.0015915853909163682 0.0 0.07722517556457709 3.14686084896012E-4 50-51 2.0575628627816169E-4 0.001863909887460994 0.0 0.08836022164551291 3.14686084896012E-4 52-53 2.178595972357006E-4 0.001876013198418533 0.0 0.09775239094856311 3.3889270681108983E-4 54-55 2.2996290819323953E-4 0.0019002198203336108 0.0 0.10765289931182995 3.630993287261677E-4 56-57 2.481178746295479E-4 0.0019607363751213054 0.0 0.11934469769681255 3.691509842049371E-4 58-59 2.541695301083174E-4 0.0019728396860788444 0.0 0.12978380339768986 3.752026396837066E-4 60-61 2.783761520233952E-4 0.0020030979634726915 0.0 0.14036814883005766 3.812542951624761E-4 62-63 2.783761520233952E-4 0.0020273045853877692 0.0 0.1498692479317257 3.9940926159878445E-4 64-65 2.783761520233952E-4 0.002178595972357006 0.0 0.16012075231276118 3.9940926159878445E-4 66-67 2.783761520233952E-4 0.002190699283314545 0.0 0.17060221960198987 3.9940926159878445E-4 68-69 2.9047946298093414E-4 0.0022149059052296227 0.0 0.1812591849001029 3.9940926159878445E-4 70-71 2.9047946298093414E-4 0.0022330608716659315 0.0 0.19143806941539315 4.1151257255632337E-4 72-73 2.9047946298093414E-4 0.002239112527144701 0.0 0.1994686162357202 4.357191944714012E-4 74-75 2.9047946298093414E-4 0.0022512158381022395 0.0 0.20625252202742078 4.357191944714012E-4 76-77 2.965311184597036E-4 0.002281474115496087 0.0 0.2125886053136924 4.4177084995017065E-4 78-79 3.0258277393847307E-4 0.0022875257709748563 0.0 0.21879155217943108 4.4782250542894014E-4 80-81 3.0258277393847307E-4 0.0022875257709748563 0.0 0.22217442759206324 4.538741609077096E-4 82-83 3.0258277393847307E-4 0.0022875257709748563 0.0 0.2240988540343119 4.5992581638647906E-4 84-85 3.0258277393847307E-4 0.002299629081932395 0.0 0.22567228445879198 4.5992581638647906E-4 86-87 3.0863442941724255E-4 0.002323835703847473 0.0 0.22596881557725168 4.5992581638647906E-4 88-89 3.14686084896012E-4 0.002396455569592707 0.0 0.226065642064912 4.5992581638647906E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6425 0.0 42.547676 1 GTATCAA 10545 0.0 30.898949 1 GTACATG 21305 0.0 26.508846 1 TCAACGC 12070 0.0 26.078169 4 TACATGG 21520 0.0 25.825016 2 CAACGCA 12460 0.0 25.294811 5 ACATGGG 21545 0.0 25.28143 3 ATCAACG 12750 0.0 24.78377 3 AACGCAG 13055 0.0 24.173359 6 TATCAAC 13730 0.0 23.313295 2 CATGGGG 16590 0.0 22.407019 4 ACGCAGA 16025 0.0 19.69318 7 CGCAGAG 16685 0.0 18.889622 8 ATGGGGG 9665 0.0 17.895084 5 GAGTACA 14685 0.0 17.750324 1 AGTACAT 14955 0.0 16.799534 2 AGAGTAC 17780 0.0 15.444229 10-11 GAGTACT 11105 0.0 15.076412 12-13 TATACCG 550 0.0 14.903574 5 GCAGAGT 21675 0.0 14.465235 9 >>END_MODULE