##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139721_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11445036 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44070084183222 34.0 31.0 34.0 31.0 34.0 2 32.53621176901497 34.0 31.0 34.0 31.0 34.0 3 32.623252473823584 34.0 31.0 34.0 31.0 34.0 4 36.15083604804738 37.0 35.0 37.0 35.0 37.0 5 36.074989017072554 37.0 35.0 37.0 35.0 37.0 6 36.10361880906272 37.0 35.0 37.0 35.0 37.0 7 36.01782012743341 37.0 35.0 37.0 35.0 37.0 8 35.99598026602975 37.0 35.0 37.0 35.0 37.0 9 37.6955655709602 39.0 37.0 39.0 35.0 39.0 10-11 37.595045048351096 39.0 37.0 39.0 35.0 39.0 12-13 37.5568802055319 39.0 37.0 39.0 35.0 39.0 14-15 38.81471923723088 40.0 38.0 41.0 35.0 41.0 16-17 38.86820666182265 40.0 38.0 41.0 35.0 41.0 18-19 38.848670812394126 40.0 38.0 41.0 35.0 41.0 20-21 38.81916530921908 40.0 38.0 41.0 35.0 41.0 22-23 38.72668577020673 40.0 38.0 41.0 34.0 41.0 24-25 38.65864054793126 40.0 38.0 41.0 34.0 41.0 26-27 38.52922388555233 40.0 38.0 41.0 34.0 41.0 28-29 38.40101676635791 40.0 38.0 41.0 34.0 41.0 30-31 38.265723395869 40.0 38.0 41.0 34.0 41.0 32-33 38.4837820528527 40.0 38.0 41.0 34.0 41.0 34-35 38.46544959051772 40.0 38.0 41.0 34.0 41.0 36-37 38.37296462869067 40.0 38.0 41.0 34.0 41.0 38-39 38.269314053871916 40.0 38.0 41.0 34.0 41.0 40-41 38.23730854838131 40.0 38.0 41.0 34.0 41.0 42-43 38.14034543605278 40.0 38.0 41.0 33.0 41.0 44-45 38.16685303529542 40.0 37.5 41.0 33.5 41.0 46-47 38.269861703087635 40.0 38.0 41.0 33.5 41.0 48-49 38.202948483226116 40.0 38.0 41.0 33.0 41.0 50-51 38.10466519474596 40.0 37.0 41.0 33.0 41.0 52-53 37.970135504842986 40.0 37.0 41.0 33.0 41.0 54-55 37.86833015284253 40.0 37.0 41.0 33.0 41.0 56-57 37.72745137583125 40.0 36.5 41.0 33.0 41.0 58-59 37.58222350438446 39.0 36.0 41.0 32.5 41.0 60-61 37.35453240822072 39.0 36.0 41.0 32.0 41.0 62-63 37.11898859466053 39.0 35.0 40.0 32.0 41.0 64-65 36.88778442994814 38.0 35.0 40.0 31.5 41.0 66-67 36.607291999081255 38.0 35.0 40.0 31.0 41.0 68-69 36.29466443769137 37.0 35.0 40.0 31.0 41.0 70-71 35.99706550233742 37.0 34.5 39.0 31.0 41.0 72-73 35.67553973377176 36.0 34.0 39.0 31.0 40.5 74-75 35.28239622983592 36.0 34.0 39.0 30.0 40.0 76-77 34.27357386174026 35.0 33.0 37.0 29.0 39.0 78-79 34.562449637077606 35.0 34.0 37.0 30.0 39.0 80-81 34.43445694974635 35.0 34.0 37.0 30.0 39.0 82-83 34.18392878114656 35.0 34.0 36.0 30.0 38.5 84-85 33.935085545730814 35.0 34.0 36.0 30.0 37.0 86-87 33.71951771868217 35.0 33.0 35.5 29.0 37.0 88-89 33.48435345551614 35.0 33.0 35.0 29.0 36.5 90-91 33.348923283689565 35.0 33.0 35.0 29.0 36.0 92-93 33.253231227729174 35.0 33.0 35.0 29.0 36.0 94-95 33.189995573259864 35.0 33.0 35.0 29.0 36.0 96-97 33.13032674215196 34.0 33.0 35.0 29.0 35.0 98-99 33.19766682491826 34.0 33.0 35.0 29.0 35.0 100-101 32.35368396265331 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 19.0 20 62.0 21 299.0 22 1286.0 23 4248.0 24 11123.0 25 24001.0 26 43860.0 27 71190.0 28 105576.0 29 144376.0 30 192397.0 31 248746.0 32 322926.0 33 425963.0 34 591980.0 35 841542.0 36 1338530.0 37 2314959.0 38 2948296.0 39 1731122.0 40 82530.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.10506074423881 20.891188109849544 12.536753925457289 25.466997220454353 2 14.780099381293734 22.81455212231775 39.45847671094418 22.94687178544433 3 17.614441449153215 27.453977505113368 30.900023512448797 24.03155753328462 4 12.056248665360249 18.051642651014816 39.00319754345902 30.88891114016592 5 12.237698509642083 38.95310595790175 36.34600188238814 12.46319365006803 6 29.646258867163024 38.62050761570344 18.935265909167956 12.797967607965585 7 26.114937515268625 32.761845397428196 24.22321782124582 16.899999266057357 8 24.83344744393989 36.646210636646316 21.883941649462702 16.636400269951096 9 26.315976638256096 15.41080342604427 21.083245172841742 37.189974762857894 10-11 24.174419372730675 26.761112852768658 29.68877948483517 19.375688289665494 12-13 24.70634430507689 24.397581624033336 29.643554638010748 21.252519432879023 14-15 21.773806953033382 25.737277221600095 26.839135071120584 25.64978075424594 16-17 21.62964988748396 28.738811196296037 27.679736234970008 21.95180268124999 18-19 21.61346712772293 28.242841605225117 29.024023890207655 21.119667376844294 20-21 22.278874146689613 27.64018773658649 28.681635776552426 21.399302340171467 22-23 22.03041700561552 27.615302250620378 28.561165073486904 21.7931156702772 24-25 21.800049201924075 27.69701649199721 28.736602713343203 21.76633159273551 26-27 21.797099424179965 27.87560688801502 28.646771326029985 21.680522361775033 28-29 21.703378886859085 27.858232117453674 28.6946351682925 21.743753827394745 30-31 21.93900427194239 27.865230132243312 28.525522255537915 21.670243340276382 32-33 21.84619645772184 27.932948109712395 28.54069036132481 21.680165071240953 34-35 21.90927846102622 27.92734988297979 28.608265666951727 21.555105989042264 36-37 21.82825522827371 27.931839130312408 28.560891938630572 21.67901370278331 38-39 21.639065021500276 28.00989769334054 28.65103300574201 21.700004279417172 40-41 21.844407205610704 27.800756309869968 28.633525286089746 21.721311198429582 42-43 21.741419207385615 27.916263806416858 28.42256406563404 21.919752920563482 44-45 21.734214659608902 28.047629617325526 28.339021462873976 21.879134260191595 46-47 21.870104289018272 27.974809165203368 28.125004358975765 22.030082186802595 48-49 21.76633230401214 28.095120558065865 28.090266853477015 22.048280284444978 50-51 21.796542571825757 28.173524965913693 28.02691309662475 22.003019365635797 52-53 21.860199251884417 28.109826746800508 28.011244301033873 22.018729700281202 54-55 21.86395240029817 28.046082016033303 27.963922022182125 22.126043561486405 56-57 21.89887442368084 28.156102597729166 27.893355210404863 22.05166776818513 58-59 21.83782199931005 28.20037197875101 27.904916605718473 22.056889416220468 60-61 21.9405282148213 28.26567637967625 27.828442826746304 21.965352578756146 62-63 21.90962782292017 28.28457498656659 27.833682391092555 21.972114799420677 64-65 21.83468915666942 28.24284195725667 27.833363493779046 22.089105392294865 66-67 21.952081126775425 28.22533423884966 27.719259733489547 22.10332490088537 68-69 21.93570101929761 28.167640798631798 27.805101093987428 22.09155708808317 70-71 21.947828360710105 27.960993929403028 27.886733357318978 22.204444352567887 72-73 21.96849530884683 28.064819649731703 27.824453257866388 22.14223178355508 74-75 21.834353902888864 28.208817484622145 27.786250330645444 22.170578281843543 76-77 21.917162578825998 28.099546035017354 27.830602893099233 22.152688493057422 78-79 21.950343397379687 28.03449328092385 27.774181267301127 22.24098205439534 80-81 21.94943455205804 28.12011389801277 27.719219241697928 22.211232308231256 82-83 21.970442339515145 27.982475071984968 27.86586113163252 22.181221456867366 84-85 22.00009658777277 28.017005166202757 27.80778138196716 22.17511686405731 86-87 21.85531739126113 28.072477363882083 27.918050766722896 22.154154478133893 88-89 21.995300920574522 27.893999860697182 27.849753771287777 22.260945447440516 90-91 21.990590737047057 27.903477360119837 27.92916441968129 22.176767483151817 92-93 22.030344238645046 27.90567930398908 27.892256772487485 22.17171968487839 94-95 21.89780012395986 27.83280535487779 28.01478971253497 22.254604808627374 96-97 21.8434072356525 27.851531983262866 28.11460467140588 22.190456109678752 98-99 21.977832918237333 28.49798741635134 28.123930786946776 21.40024887846455 100-101 24.604539678188956 36.231186123205916 29.48562450239452 9.678649696210602 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2382.0 1 2199.0 2 3202.0 3 4709.5 4 6273.0 5 9671.5 6 12542.0 7 14705.5 8 15851.5 9 15159.5 10 13643.0 11 12399.5 12 13573.5 13 17597.0 14 26227.5 15 37429.0 16 45775.5 17 49503.0 18 49884.5 19 48950.0 20 47745.0 21 47140.0 22 49281.0 23 56286.5 24 68250.0 25 84840.5 26 106074.5 27 129083.0 28 153581.5 29 181671.5 30 209492.5 31 238057.0 32 270588.0 33 304389.5 34 337631.0 35 368944.0 36 399233.5 37 424232.0 38 442170.5 39 455555.5 40 466395.5 41 475981.5 42 481663.0 43 488753.5 44 495005.5 45 496846.0 46 499932.0 47 501259.0 48 496372.0 49 486044.5 50 475598.5 51 461695.5 52 439483.5 53 414979.5 54 387584.0 55 357288.0 56 327211.5 57 294957.5 58 261624.5 59 228606.0 60 195123.0 61 162144.5 62 131180.5 63 103628.5 64 79511.0 65 59769.5 66 44320.5 67 33492.5 68 25648.0 69 18387.0 70 12715.0 71 8872.5 72 6074.0 73 4063.5 74 2802.0 75 2013.5 76 1427.0 77 958.0 78 665.0 79 503.5 80 384.5 81 283.5 82 198.5 83 131.0 84 97.5 85 82.0 86 66.5 87 53.0 88 39.5 89 25.5 90 15.5 91 14.0 92 12.0 93 7.5 94 3.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.184353111689644E-4 3 3.058094356365502E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.1843531116896445E-5 16-17 8.737412446758576E-6 18-19 1.0484894936110294E-4 20-21 0.0 22-23 9.175532524968918E-5 24-25 0.002058414391594327 26-27 0.0031084501534223447 28-29 0.0031628734131879397 30-31 0.0048497639934858075 32-33 0.0023058773035220144 34-35 0.0062849949931596686 36-37 0.022839772525792126 38-39 0.010572348159618605 40-41 0.004176466194186846 42-43 0.007782683828514926 44-45 0.004588818230479114 46-47 0.0037241701946708846 48-49 0.002438562236886549 50-51 9.05599152740498E-5 52-53 4.8220699583980734E-5 54-55 0.002918165988306938 56-57 0.0027296143425805447 58-59 0.004408539285426437 60-61 0.0018832974522752066 62-63 0.0014769430851719512 64-65 2.723598678363266E-4 66-67 6.38136539203679E-5 68-69 2.0002299723865548E-4 70-71 3.023853641965063E-4 72-73 0.0011796229801961427 74-75 0.003510854163549221 76-77 0.003799498939633757 78-79 0.001586526604964101 80-81 0.0062693871216010204 82-83 0.004284490668660074 84-85 0.007066443838551957 86-87 0.003577053272896116 88-89 0.05427665492297655 90-91 6.598268139364924E-6 92-93 1.9580113248674326E-4 94-95 0.0015489556063099747 96-97 0.025514615339765477 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 340.0 20-21 901.0 22-23 1750.0 24-25 4257.0 26-27 5690.0 28-29 13193.0 30-31 26868.0 32-33 36331.0 34-35 51855.0 36-37 85037.0 38-39 97238.0 40-41 96800.0 42-43 109020.0 44-45 127793.0 46-47 133672.0 48-49 132403.0 50-51 123577.0 52-53 119901.0 54-55 132080.0 56-57 140995.0 58-59 145599.0 60-61 144136.0 62-63 135111.0 64-65 139771.0 66-67 153413.0 68-69 154224.0 70-71 153396.0 72-73 143406.0 74-75 141483.0 76-77 146367.0 78-79 158311.0 80-81 159990.0 82-83 148846.0 84-85 146407.0 86-87 152022.0 88-89 162740.0 90-91 172475.0 92-93 171393.0 94-95 198251.0 96-97 251989.0 98-99 871417.0 100-101 5954588.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.12617494862025 #Duplication Level Percentage of deduplicated Percentage of total 1 89.52885259188324 75.31719916094002 2 6.970147110022021 11.727436303906646 3 1.8660894350089205 4.709608988379971 4 0.741058781134884 2.493697626758581 5 0.33742467406782684 1.419312358130558 6 0.18972999222585557 0.9576755111395611 7 0.11497783965997217 0.6770852098114458 8 0.0693257286862029 0.46656867039168687 9 0.046069336706285643 0.3488073371567891 >10 0.13387678832576091 1.6762436688550006 >50 0.001963536337174216 0.11015305354247235 >100 4.4914935577771987E-4 0.07165951332021786 >500 3.503658610780096E-5 0.024552597667039627 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.737412446758576E-6 2 0.0 8.737412446758577E-5 0.0 0.0 8.737412446758576E-6 3 0.0 8.737412446758577E-5 0.0 0.0 8.737412446758576E-6 4 0.0 1.8348566138193012E-4 0.0 8.737412446758577E-5 8.737412446758576E-6 5 0.0 1.8348566138193012E-4 0.0 8.737412446758577E-5 8.737412446758576E-6 6 0.0 1.8348566138193012E-4 0.0 8.737412446758577E-5 1.7474824893517153E-5 7 0.0 1.8348566138193012E-4 0.0 9.611153691434435E-5 1.7474824893517153E-5 8 8.737412446758576E-6 2.0969789872220585E-4 0.0 9.611153691434435E-5 1.7474824893517153E-5 9 8.737412446758576E-6 3.2328426053006737E-4 0.0 2.4464754850924016E-4 3.4949649787034306E-5 10-11 1.7474824893517153E-5 3.2328426053006737E-4 0.0 2.4464754850924016E-4 3.4949649787034306E-5 12-13 2.621223734027573E-5 3.2328426053006737E-4 0.0 2.927033169664123E-4 3.931835601041359E-5 14-15 2.621223734027573E-5 4.062896787742738E-4 0.0 3.2328426053006737E-4 4.8055768457172177E-5 16-17 3.058094356365502E-5 4.106583849976531E-4 0.0 3.320216729768259E-4 7.86367120208272E-5 18-19 3.4949649787034306E-5 4.54345447231446E-4 0.0 3.7134002898723953E-4 7.86367120208272E-5 20-21 3.931835601041359E-5 4.980325094652389E-4 0.0 4.6308285967820457E-4 7.86367120208272E-5 22-23 4.3687062233792884E-5 5.28613453028894E-4 0.0 6.20356283719859E-4 9.174283069096506E-5 24-25 4.3687062233792884E-5 5.985127526029625E-4 0.0 9.174283069096506E-4 1.0921765558448222E-4 26-27 4.3687062233792884E-5 6.290936961666176E-4 0.0 0.001529047178182751 1.1358636180786151E-4 28-29 4.3687062233792884E-5 6.290936961666176E-4 0.0 0.005063330512896595 1.1358636180786151E-4 30-31 4.3687062233792884E-5 6.378311086133762E-4 0.0 0.01455216043007641 1.1358636180786151E-4 32-33 5.242447468055146E-5 6.421998148367555E-4 0.0 0.030873646880621435 1.3106118670137867E-4 34-35 6.989929957406861E-5 8.082106513251685E-4 0.0 0.05354723217995994 1.3106118670137867E-4 36-37 6.989929957406861E-5 9.742214878135814E-4 0.0 0.08495822992605703 1.3106118670137867E-4 38-39 6.989929957406861E-5 0.0010048024313772364 0.0 0.13047141136122245 1.3979859914813725E-4 40-41 1.3106118670137867E-4 0.0010921765558448223 0.0 0.17535986780644464 1.6601083648841298E-4 42-43 1.3106118670137867E-4 0.001122757499408477 0.0 0.21541216646238598 1.6601083648841298E-4 44-45 1.4853601159489584E-4 0.0012669248047799935 0.0 0.25150204857372227 1.6601083648841298E-4 46-47 1.7037954271179224E-4 0.0013805111665878551 0.0 0.28137963043541325 1.8348566138193012E-4 48-49 1.7474824893517154E-4 0.0013848798728112344 0.0 0.30444639929485584 2.0096048627544726E-4 50-51 1.922230738286887E-4 0.001529047178182751 0.0 0.321541146746939 2.0096048627544726E-4 52-53 1.922230738286887E-4 0.0015377845906295096 0.0 0.3342890315067598 2.4901625473261945E-4 54-55 1.96591780052068E-4 0.001542153296852889 0.0 0.34707623462259096 2.970720231897916E-4 56-57 2.0096048627544726E-4 0.001572734240416544 0.0 0.35773587780763644 2.970720231897916E-4 58-59 2.0096048627544726E-4 0.0015771029466399233 0.0 0.36857900665406385 2.970720231897916E-4 60-61 2.0096048627544726E-4 0.0015989464777568197 0.0 0.37918185665820536 2.970720231897916E-4 62-63 2.0096048627544726E-4 0.0016382648337672332 0.0 0.38883669741187354 3.058094356365502E-4 64-65 2.0969789872220585E-4 0.0017736947266919912 0.0 0.3987667666576147 3.058094356365502E-4 66-67 2.1406660494558514E-4 0.0017824321391387498 0.0 0.4089939079265456 3.101781418599295E-4 68-69 2.3154142983910228E-4 0.0018042756702556463 0.0 0.4196360762866976 3.145468480833088E-4 70-71 2.3591013606248158E-4 0.0018261192013725427 0.0 0.4302039766410521 3.145468480833088E-4 72-73 2.3591013606248158E-4 0.0018261192013725427 0.0 0.43845646269701555 3.407590854235845E-4 74-75 2.4464754850924016E-4 0.0018654375573829564 0.0 0.4453764933548483 3.407590854235845E-4 76-77 2.4464754850924016E-4 0.0019353368569570248 0.0 0.4517810166783224 3.407590854235845E-4 78-79 2.4464754850924016E-4 0.00196591780052068 0.0 0.457294323932227 3.407590854235845E-4 80-81 2.4464754850924016E-4 0.00196591780052068 0.0 0.4606407528993356 3.4949649787034307E-4 82-83 2.4464754850924016E-4 0.001970286506744059 0.0 0.46265035776209007 3.6697132276386024E-4 84-85 2.4464754850924016E-4 0.0020008674503077142 0.0 0.46412698046559225 3.6697132276386024E-4 86-87 2.4464754850924016E-4 0.0020314483938713695 0.0 0.4643104661269742 3.6697132276386024E-4 88-89 2.5775366717937804E-4 0.0021188225183389553 0.0 0.4643672593078781 3.6697132276386024E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10330 0.0 42.087498 1 GTATCAA 18645 0.0 34.04819 1 ATCAACG 21610 0.0 28.45245 3 TCAACGC 21565 0.0 28.417349 4 CAACGCA 22220 0.0 27.653015 5 GTACATG 37520 0.0 27.030312 1 AACGCAG 22740 0.0 27.020668 6 TACATGG 37380 0.0 26.575619 2 TATCAAC 23445 0.0 26.434309 2 ACATGGG 37640 0.0 25.915508 3 CATGGGG 25695 0.0 22.930044 4 ACGCAGA 27985 0.0 21.970964 7 CGCAGAG 28300 0.0 21.74081 8 ATGGGGG 14720 0.0 20.428371 5 GAGTACA 24880 0.0 20.01289 1 AGTACAT 25850 0.0 18.39498 2 TATACCG 840 0.0 17.46258 5 GCAGAGT 35030 0.0 17.435995 9 AGAGTAC 31070 0.0 15.992846 10-11 GAGTACT 18510 0.0 15.4971695 12-13 >>END_MODULE