##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139720_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9064048 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14461518738648 33.0 31.0 34.0 30.0 34.0 2 32.26694220948521 34.0 31.0 34.0 30.0 34.0 3 32.321598252789485 34.0 31.0 34.0 30.0 34.0 4 35.95313881832929 37.0 35.0 37.0 35.0 37.0 5 35.81655812061013 37.0 35.0 37.0 35.0 37.0 6 35.83607136678888 37.0 35.0 37.0 35.0 37.0 7 35.7497632404418 37.0 35.0 37.0 33.0 37.0 8 35.711008811956866 37.0 35.0 37.0 33.0 37.0 9 37.33917814645289 39.0 37.0 39.0 34.0 39.0 10-11 37.23628443935866 39.0 37.0 39.0 33.0 39.0 12-13 37.19945729546004 39.0 37.0 39.0 33.0 39.0 14-15 38.39440926394035 40.0 38.0 41.0 33.0 41.0 16-17 38.41019349191443 40.0 38.0 41.0 33.0 41.0 18-19 38.401364820662906 40.0 38.0 41.0 33.5 41.0 20-21 38.37186561387699 40.0 38.0 41.0 34.0 41.0 22-23 38.26972188381437 40.0 38.0 41.0 33.0 41.0 24-25 38.18221995989956 40.0 38.0 41.0 33.0 41.0 26-27 38.015169903173685 40.0 37.0 41.0 33.0 41.0 28-29 37.879304544982446 40.0 37.0 41.0 33.0 41.0 30-31 37.731127076544766 40.0 37.0 41.0 32.0 41.0 32-33 37.92952424782514 40.0 37.0 41.0 33.0 41.0 34-35 37.91594785729205 40.0 37.0 41.0 33.0 41.0 36-37 37.832980795073915 40.0 37.0 41.0 33.0 41.0 38-39 37.7236514636754 40.0 37.0 41.0 33.0 41.0 40-41 37.6778306566079 40.0 37.0 41.0 33.0 41.0 42-43 37.573224928357526 40.0 37.0 41.0 32.0 41.0 44-45 37.61584845831072 40.0 37.0 41.0 32.5 41.0 46-47 37.75005385266868 40.0 37.0 41.0 33.0 41.0 48-49 37.68100408872487 40.0 37.0 41.0 32.0 41.0 50-51 37.56150028632479 40.0 36.5 41.0 32.0 41.0 52-53 37.415489571651165 39.5 36.0 41.0 31.0 41.0 54-55 37.312581426177616 39.0 36.0 41.0 31.0 41.0 56-57 37.14682112524562 39.0 36.0 41.0 31.0 41.0 58-59 37.000724713035616 39.0 35.0 40.0 31.0 41.0 60-61 36.7737787574906 38.5 35.0 40.0 31.0 41.0 62-63 36.516799367224905 38.0 35.0 40.0 30.5 41.0 64-65 36.30057597841518 38.0 35.0 40.0 30.0 41.0 66-67 36.00937335877063 37.5 34.0 40.0 30.0 41.0 68-69 35.69025265942899 37.0 34.0 39.5 29.0 41.0 70-71 35.38642255596554 36.0 34.0 39.0 29.0 41.0 72-73 35.07640674010013 36.0 34.0 39.0 29.0 40.0 74-75 34.68122405909831 35.5 33.5 38.0 29.0 40.0 76-77 33.61084985077873 35.0 32.0 37.0 27.5 39.0 78-79 33.94610644063485 35.0 33.0 37.0 28.5 39.0 80-81 33.81643440989901 35.0 33.0 36.5 29.0 39.0 82-83 33.580370818668 35.0 33.0 36.0 29.0 37.5 84-85 33.35261501557426 35.0 33.0 36.0 29.0 37.0 86-87 33.13739645570308 35.0 32.0 35.0 28.5 37.0 88-89 32.90368772618497 34.0 32.0 35.0 28.0 36.0 90-91 32.757679190319365 34.0 32.0 35.0 27.0 36.0 92-93 32.66611644530712 34.0 32.0 35.0 27.0 36.0 94-95 32.61126547621853 34.0 32.0 35.0 27.0 35.0 96-97 32.54751250649281 34.0 32.0 35.0 27.0 35.0 98-99 32.67478607793494 34.0 32.0 35.0 29.0 35.0 100-101 31.768769778720774 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 10.0 20 48.0 21 325.0 22 1738.0 23 5735.0 24 15001.0 25 31390.0 26 56212.0 27 89194.0 28 126933.0 29 169160.0 30 215473.0 31 267850.0 32 330963.0 33 418349.0 34 550558.0 35 749170.0 36 1123311.0 37 1764799.0 38 2015090.0 39 1088237.0 40 44498.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.986002721962635 21.72128832503976 14.142544258371096 25.150164694626508 2 14.475986276169905 22.873061191256518 39.65237200326304 22.998580529310537 3 17.140619731934343 27.07304727424215 31.502392749906 24.283940243917506 4 12.212522826506197 18.86707272619755 39.02009747547005 29.9003069718262 5 12.53652893276823 38.34184240860154 36.53631357645061 12.58531508217962 6 29.70298700977753 39.04169527787143 18.63120098216603 12.624116730185012 7 25.765287209423427 32.83233936978268 24.15158216284821 17.25079125794568 8 24.2553768470776 37.08471093710007 21.754353021961048 16.905559193861286 9 25.48274236853115 16.03120371825039 21.36447203280477 37.12158188041369 10-11 23.745941107107992 26.94974144002768 29.838108756705612 19.466208696158713 12-13 24.42644831536638 24.549853442965 29.639527504708713 21.38417073695991 14-15 21.606372781785797 26.06205306944535 26.795224385396015 25.536349763372833 16-17 21.494783908812835 29.028033321596077 27.67298987177632 21.80419289781477 18-19 21.527224922021595 28.450864337876407 28.953156470486473 21.068754269615518 20-21 22.17424070947861 27.78906518377202 28.711821427273044 21.32487267947633 22-23 21.91118166446891 27.75783602678004 28.566038312547732 21.764943996203314 24-25 21.774658345990865 27.872799703150452 28.622660472147064 21.72988147871162 26-27 21.7906371373126 28.04280339313368 28.52102213597379 21.645537333579934 28-29 21.745069088394718 27.99423280927798 28.57082481677546 21.689873285551847 30-31 22.011476995132313 27.919842632448265 28.477463625131822 21.591216747287604 32-33 21.794301660270808 28.053120629710698 28.454942360672565 21.69763534934593 34-35 21.886071221774923 28.076277044748853 28.47119248064423 21.56645925283199 36-37 21.880187418960826 27.958185889491038 28.443901954590565 21.717724736957567 38-39 21.708512705648694 28.00787989863267 28.585341705994544 21.698265689724096 40-41 21.894670728963934 27.851799478421324 28.520580336126322 21.732949456488416 42-43 21.777953750566535 27.957333226872745 28.36292383852575 21.90178918403497 44-45 21.824452731281827 28.030130193852482 28.21398167495123 21.931435399914463 46-47 21.89026411575298 27.960289713478552 28.059420015028557 22.09002615573991 48-49 21.773645219455496 28.07375726323341 28.11328099034483 22.03931652696626 50-51 21.761929773891982 28.153123004692105 28.02042176792555 22.064525453490365 52-53 21.872809488362716 28.0893948910722 27.931165975576533 22.10662964498855 54-55 21.82622093900896 27.986636902535867 27.979870635928588 22.207271522526582 56-57 21.87167106582991 28.08634734275402 27.869319443447278 22.172662147968794 58-59 21.79934986194674 28.122064995340924 27.893061808957718 22.18552333375462 60-61 21.93506558083158 28.108149123016606 27.843307306785004 22.113477989366807 62-63 21.854338940054248 28.2386283601967 27.824108081354392 22.08292461839466 64-65 21.78121584538393 28.203298237899947 27.756913284512123 22.258572632204 66-67 21.891220657159824 28.302805813866662 27.53809281715886 22.26788071181465 68-69 21.876562618471073 28.321491881685024 27.534600580493695 22.267344919350208 70-71 21.90906021014172 28.059421737463474 27.62592482801652 22.40559322437829 72-73 21.932845642916245 28.07840499212314 27.52591629994979 22.462833065010823 74-75 21.930806089955496 28.154386863031426 27.48908932040778 22.425717726605303 76-77 22.142665023835566 28.138008058752558 27.400819927389986 22.318506990021884 78-79 22.050014382990554 28.13872932403221 27.34503993839627 22.466216354580965 80-81 22.04739933283647 28.1870409457868 27.368861024033436 22.396698697343293 82-83 22.06391936596282 28.138506592291307 27.476951170765833 22.32062287098004 84-85 22.137974684540787 28.190784631238042 27.453890486510574 22.2173501977106 86-87 22.007288521088743 28.196907364795187 27.526991781379344 22.268812332736722 88-89 22.025977802771777 28.180017773388798 27.522154852084324 22.271849571755098 90-91 22.07104770013114 28.202217514674118 27.608991109933527 22.11774367526122 92-93 22.063678976374053 28.1882480463161 27.626125107437826 22.121947869872024 94-95 21.984854311133088 28.18691013319127 27.711632533667036 22.11660302200861 96-97 21.80761574584374 28.252436041133215 27.826309399164078 22.113638813858962 98-99 21.942222776335534 28.77205227898621 27.999651486261868 21.28607345841639 100-101 24.68585884210577 36.532160441487584 29.161070493623725 9.62091022278292 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2071.0 1 1895.0 2 2374.5 3 3214.0 4 4180.0 5 6158.0 6 7733.5 7 8789.5 8 9398.5 9 9307.5 10 8940.0 11 8528.0 12 9527.5 13 12698.5 14 19281.5 15 27881.0 16 34736.5 17 38514.0 18 39768.0 19 39482.0 20 38673.5 21 38775.5 22 41206.0 23 47441.0 24 57512.0 25 71868.0 26 90470.0 27 110970.5 28 133854.5 29 158195.5 30 181045.0 31 203194.0 32 226161.0 33 248274.5 34 268425.0 35 287885.5 36 309218.5 37 327859.5 38 342958.5 39 357112.5 40 369881.5 41 382046.5 42 389628.0 43 395820.0 44 401691.5 45 404157.0 46 404677.0 47 402908.5 48 401175.5 49 394592.5 50 382567.0 51 369061.5 52 351624.5 53 330926.0 54 307929.0 55 283237.0 56 258206.5 57 232461.0 58 204643.0 59 175614.5 60 146996.0 61 120090.0 62 95832.0 63 74756.0 64 56329.5 65 42009.5 66 31434.5 67 23776.5 68 17993.5 69 13142.5 70 9547.5 71 6956.0 72 4952.5 73 3364.0 74 2286.5 75 1583.5 76 1082.0 77 737.0 78 524.5 79 380.5 80 268.0 81 183.0 82 127.5 83 85.0 84 57.5 85 41.5 86 34.5 87 28.0 88 22.5 89 17.5 90 12.0 91 8.5 92 5.5 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011694554132987822 3 0.0 4 2.6478235772802616E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.003491817342538345 18-19 0.0 20-21 0.002179035756266631 22-23 0.0 24-25 3.752545660754862E-4 26-27 0.0037374969822610224 28-29 0.0 30-31 1.8259401018608985E-4 32-33 8.824094506385148E-4 34-35 8.973243571172592E-4 36-37 0.010120631873011427 38-39 0.011632689589914577 40-41 0.02583170285704232 42-43 0.002203777921491277 44-45 0.0013420061942338078 46-47 0.0016905657093927004 48-49 0.0015988888500977029 50-51 7.274949439101399E-5 52-53 1.349184699951135E-4 54-55 0.006772009869274164 56-57 0.004189503754222479 58-59 0.004520391262147358 60-61 0.0019889217060970396 62-63 5.63177036207503E-4 64-65 8.900254646912617E-4 66-67 7.487276688600116E-4 68-69 6.855468555850988E-6 70-71 6.968394914549011E-6 72-73 1.4165085429984357E-4 74-75 2.6632849186524816E-4 76-77 0.0016979373793375803 78-79 0.002077541287223732 80-81 0.011491035854307318 82-83 0.010077002518323297 84-85 0.013672162634664309 86-87 0.006762881966450329 88-89 0.09490779940667476 90-91 4.5205651811503487E-4 92-93 4.28636667072157E-5 94-95 2.7284380343557874E-4 96-97 0.015900099628475266 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 257.0 20-21 791.0 22-23 1708.0 24-25 3332.0 26-27 5327.0 28-29 10641.0 30-31 24800.0 32-33 34858.0 34-35 50350.0 36-37 77829.0 38-39 80969.0 40-41 83835.0 42-43 93379.0 44-45 109208.0 46-47 110482.0 48-49 103849.0 50-51 97513.0 52-53 87708.0 54-55 100310.0 56-57 105962.0 58-59 110728.0 60-61 109358.0 62-63 105227.0 64-65 112738.0 66-67 119965.0 68-69 118272.0 70-71 116835.0 72-73 113082.0 74-75 114503.0 76-77 115221.0 78-79 122034.0 80-81 123028.0 82-83 118165.0 84-85 118624.0 86-87 125048.0 88-89 131134.0 90-91 139137.0 92-93 146613.0 94-95 182062.0 96-97 234092.0 98-99 720258.0 100-101 4584816.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.01883140647782 #Duplication Level Percentage of deduplicated Percentage of total 1 91.89616206137615 80.8859279538263 2 5.773956546552691 10.164338156387004 3 1.2908350614678366 3.408533809467238 4 0.48923592654454334 1.7224789814606452 5 0.21214902403464742 0.9336554589777221 6 0.11052201263045977 0.583681103785503 7 0.06395747862002811 0.3940623769487765 8 0.04414955961022229 0.31087941152019183 9 0.026689545473173173 0.21142643429868774 >10 0.09023234630028724 1.236391933415434 >50 0.0018647157150000543 0.1083703635204946 >100 2.45721674897338E-4 0.04025401639203334 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1032598238667757E-5 0.0 0.0 0.0 3 0.0 1.1032598238667757E-5 0.0 1.1032598238667757E-5 0.0 4 0.0 5.516299119333878E-5 0.0 3.309779471600327E-5 2.2065196477335513E-5 5 1.1032598238667757E-5 6.619558943200654E-5 0.0 4.4130392954671026E-5 2.2065196477335513E-5 6 2.2065196477335513E-5 6.619558943200654E-5 0.0 4.4130392954671026E-5 3.309779471600327E-5 7 2.2065196477335513E-5 7.722818767067429E-5 0.0 5.516299119333878E-5 3.309779471600327E-5 8 2.2065196477335513E-5 8.826078590934205E-5 0.0 5.516299119333878E-5 5.516299119333878E-5 9 2.2065196477335513E-5 1.765215718186841E-4 0.0 7.722818767067429E-5 5.516299119333878E-5 10-11 2.758149559666939E-5 1.8755417005735187E-4 0.0 1.268748797446792E-4 5.516299119333878E-5 12-13 3.309779471600327E-5 2.0410306741535349E-4 0.0 1.3239117886401308E-4 5.516299119333878E-5 14-15 4.4130392954671026E-5 2.9236385332469554E-4 0.0 1.3790747798334696E-4 8.274448679000817E-5 16-17 8.826078590934205E-5 2.9788015244402945E-4 0.0 1.5445637534134858E-4 1.1584228150601143E-4 18-19 8.826078590934205E-5 3.1442904980203106E-4 0.0 1.8203787093801799E-4 1.4342377710268084E-4 20-21 8.826078590934205E-5 3.309779471600327E-4 0.0 2.9788015244402945E-4 1.4342377710268084E-4 22-23 9.377708502867593E-5 3.695920409953698E-4 0.0 5.626625101720557E-4 1.599726744606825E-4 24-25 1.1032598238667757E-4 4.026898357113731E-4 0.0 9.212219529287577E-4 1.765215718186841E-4 26-27 1.1032598238667757E-4 4.302713313080425E-4 0.0 0.0015997267446068246 1.765215718186841E-4 28-29 1.1032598238667757E-4 4.357876304273764E-4 0.0 0.005698336990271896 1.765215718186841E-4 30-31 1.1032598238667757E-4 4.964669207400491E-4 0.0 0.020697154295740712 1.765215718186841E-4 32-33 1.4894007622201472E-4 5.074995189787168E-4 0.0 0.05045207174542765 1.765215718186841E-4 34-35 1.6548897358001634E-4 5.847277066493911E-4 0.0 0.0905004033517916 1.8755417005735187E-4 36-37 1.6548897358001634E-4 6.729884925587332E-4 0.0 0.1467887195654745 1.8755417005735187E-4 38-39 1.6548897358001634E-4 7.005699881554025E-4 0.0 0.232859534724441 2.0410306741535349E-4 40-41 1.765215718186841E-4 7.447003811100736E-4 0.0 0.340912801873953 2.0961936653468737E-4 42-43 1.8755417005735187E-4 7.777981758260769E-4 0.0 0.40702564681916953 2.1513566565402125E-4 44-45 1.8755417005735187E-4 8.495100643774172E-4 0.0 0.5003503953200601 2.2065196477335513E-4 46-47 1.9307046917668572E-4 8.936404573320882E-4 0.0 0.6038306504996442 2.316845630120229E-4 48-49 2.0961936653468737E-4 8.991567564514221E-4 0.0 0.6853615514833991 2.4271716125069063E-4 50-51 2.3720086213135678E-4 0.0010315479353154352 0.0 0.7596661006208263 2.4271716125069063E-4 52-53 2.482334603700245E-4 0.0010591294309121046 0.0 0.8329887485150123 2.537497594893584E-4 54-55 2.537497594893584E-4 0.001086710926508774 0.0 0.9804283913765681 2.7029865684736E-4 56-57 2.6478235772802616E-4 0.0010922272256281079 0.0 1.1022393085296989 2.758149559666939E-4 58-59 2.7029865684736E-4 0.0010922272256281079 0.0 1.1990007113819345 2.758149559666939E-4 60-61 2.758149559666939E-4 0.0011032598238667757 0.0 1.2477813444942039 2.758149559666939E-4 62-63 2.868475542053617E-4 0.0011142924221054435 0.0 1.2771335721081796 2.868475542053617E-4 64-65 2.868475542053617E-4 0.001224618404492121 0.0 1.298818143946281 2.9236385332469554E-4 66-67 2.9236385332469554E-4 0.001224618404492121 0.0 1.3105678610704623 2.9788015244402945E-4 68-69 3.0891275068269716E-4 0.0012521999000887902 0.0 1.3217107852915166 2.9788015244402945E-4 70-71 3.0891275068269716E-4 0.0012852976948047937 0.0 1.3317339007913462 3.0891275068269716E-4 72-73 3.0891275068269716E-4 0.0013073628912821291 0.0 1.3395560129425617 3.309779471600327E-4 74-75 3.0891275068269716E-4 0.0013459769851174664 0.0 1.346567229123235 3.309779471600327E-4 76-77 3.0891275068269716E-4 0.0013956236771914712 0.0 1.352778581931605 3.309779471600327E-4 78-79 3.199453489213649E-4 0.0014121725745494728 0.0 1.3578756423178695 3.309779471600327E-4 80-81 3.199453489213649E-4 0.0014121725745494728 0.0 1.3610199328158896 3.364942462793666E-4 82-83 3.199453489213649E-4 0.0014176888736688069 0.0 1.3630940612847593 3.530431436373682E-4 84-85 3.199453489213649E-4 0.0014287214719074745 0.0 1.3648813421994235 3.530431436373682E-4 86-87 3.199453489213649E-4 0.0014563029675041439 0.0 1.3652123201465836 3.530431436373682E-4 88-89 3.199453489213649E-4 0.0015114659586974825 0.0 1.3652950646333735 3.530431436373682E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7950 0.0 42.609863 1 GTATCAA 13575 0.0 30.848215 1 TCAACGC 15675 0.0 25.807945 4 ATCAACG 15965 0.0 25.390034 3 CAACGCA 16105 0.0 25.169315 5 AACGCAG 16695 0.0 24.328493 6 TATCAAC 17395 0.0 23.630196 2 GTACATG 20715 0.0 21.137081 1 TACATGG 21035 0.0 20.352104 2 ACGCAGA 19925 0.0 20.343884 7 CGCAGAG 20455 0.0 19.777048 8 ACATGGG 21220 0.0 19.580866 3 CATGGGG 15525 0.0 17.08375 4 AGAGTAC 21910 0.0 15.924799 10-11 GCAGAGT 25275 0.0 15.764474 9 GAGTACT 14450 0.0 15.502469 12-13 CAGAGTA 24680 0.0 14.738173 10-11 GAGTACA 15005 0.0 14.130116 1 ATGGGGG 9140 0.0 14.086877 5 TATACTG 4685 0.0 13.871136 5 >>END_MODULE