##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139719_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14882237 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12585251800519 33.0 31.0 34.0 30.0 34.0 2 32.249697945275294 33.0 31.0 34.0 30.0 34.0 3 32.30331945392349 34.0 31.0 34.0 30.0 34.0 4 35.94311554103056 37.0 35.0 37.0 35.0 37.0 5 35.80599153205261 37.0 35.0 37.0 35.0 37.0 6 35.824329702584365 37.0 35.0 37.0 35.0 37.0 7 35.73420420599403 37.0 35.0 37.0 33.0 37.0 8 35.69610307912715 37.0 35.0 37.0 33.0 37.0 9 37.32196161101318 39.0 37.0 39.0 34.0 39.0 10-11 37.21538512657741 39.0 37.0 39.0 33.0 39.0 12-13 37.175715115946616 39.0 37.0 39.0 33.0 39.0 14-15 38.362757494051465 40.0 38.0 41.0 33.0 41.0 16-17 38.3791138724642 40.0 38.0 41.0 33.0 41.0 18-19 38.37093294509421 40.0 38.0 41.0 33.5 41.0 20-21 38.3357204627017 40.0 38.0 41.0 34.0 41.0 22-23 38.23191036159159 40.0 38.0 41.0 33.0 41.0 24-25 38.14239664602089 40.0 37.5 41.0 33.0 41.0 26-27 37.972029446756565 40.0 37.0 41.0 33.0 41.0 28-29 37.83729287192009 40.0 37.0 41.0 33.0 41.0 30-31 37.68913101348316 40.0 37.0 41.0 32.0 41.0 32-33 37.88839802885074 40.0 37.0 41.0 33.0 41.0 34-35 37.8715702961899 40.0 37.0 41.0 33.0 41.0 36-37 37.78778117501181 40.0 37.0 41.0 33.0 41.0 38-39 37.67869554093312 40.0 37.0 41.0 32.5 41.0 40-41 37.62690810419865 40.0 37.0 41.0 32.0 41.0 42-43 37.51563607505878 39.5 36.5 41.0 32.0 41.0 44-45 37.55933010604852 39.5 36.5 41.0 32.5 41.0 46-47 37.696014523493865 40.0 37.0 41.0 32.5 41.0 48-49 37.62066319909004 40.0 37.0 41.0 32.0 41.0 50-51 37.4968362820253 40.0 36.0 41.0 32.0 41.0 52-53 37.340127494606776 39.0 36.0 41.0 31.0 41.0 54-55 37.2263006752885 39.0 36.0 41.0 31.0 41.0 56-57 37.0492228204959 39.0 35.0 40.5 31.0 41.0 58-59 36.8930908525538 39.0 35.0 40.0 31.0 41.0 60-61 36.6550406472591 38.0 35.0 40.0 31.0 41.0 62-63 36.380373484689756 38.0 35.0 40.0 30.0 41.0 64-65 36.14940207986057 37.5 34.5 40.0 30.0 41.0 66-67 35.84769879470471 37.0 34.0 40.0 29.5 41.0 68-69 35.520118075029785 36.5 34.0 39.0 29.0 41.0 70-71 35.21123937544608 36.0 34.0 39.0 29.0 40.5 72-73 34.89824779296306 36.0 34.0 39.0 29.0 40.0 74-75 34.50722874081407 35.0 33.0 38.0 29.0 40.0 76-77 33.44789589175019 34.5 31.5 36.5 27.5 39.0 78-79 33.78825602736097 35.0 33.0 37.0 28.0 39.0 80-81 33.66978993225616 35.0 33.0 36.0 29.0 38.5 82-83 33.44783448101185 35.0 33.0 36.0 28.5 37.0 84-85 33.22950465389982 35.0 32.0 35.5 28.0 37.0 86-87 33.02161250656632 34.5 32.0 35.0 28.0 36.5 88-89 32.79186853077906 34.0 32.0 35.0 27.0 36.0 90-91 32.658067462632246 34.0 32.0 35.0 27.0 36.0 92-93 32.57071632512788 34.0 32.0 35.0 27.0 35.5 94-95 32.52132587145552 34.0 32.0 35.0 27.0 35.0 96-97 32.46156361006315 34.0 32.0 35.0 27.0 35.0 98-99 32.59538034779196 34.0 32.0 35.0 28.5 35.0 100-101 31.66648988637028 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 15.0 20 95.0 21 658.0 22 2996.0 23 10038.0 24 26079.0 25 54187.0 26 96136.0 27 150631.0 28 214348.0 29 283286.0 30 359771.0 31 447643.0 32 554632.0 33 703481.0 34 927963.0 35 1273018.0 36 1912930.0 37 2966203.0 38 3177229.0 39 1659699.0 40 61190.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.40382752942316 21.429560623177817 13.9163218540331 25.250289993365914 2 14.744055456868448 22.685346079962628 39.09941989182675 23.47117857134218 3 17.27955951783324 26.921295501476024 31.2045427041647 24.594602276526036 4 12.388482504662955 18.52718087131508 38.598240286344875 30.486096337677093 5 12.717516862552317 38.28708681362889 36.24935552363532 12.746040800183467 6 30.246064486138746 38.56910758779073 18.389648007890212 12.79517991818031 7 26.283380650368628 32.548399813818314 23.88026074305899 17.287958792754075 8 24.816591752973697 36.58616644796074 21.4482674882815 17.148974310784055 9 25.828146669079388 15.754291508729501 21.00846129516685 37.409100527024265 10-11 24.16032616601926 26.616324548520492 29.511887225018658 19.711462060441583 12-13 24.787459707838277 24.25158932759907 29.328400024808097 21.632550939754555 14-15 21.966761448564487 25.638850530333578 26.44374968628708 25.95063833481485 16-17 21.884211874839004 28.64189634886668 27.28617446982892 22.187717306465395 18-19 21.94945894222757 28.09957266505029 28.55538451645408 21.395583876268066 20-21 22.583965535935363 27.43938097360774 28.291178298689434 21.68547519176746 22-23 22.310709299336516 27.335395409556227 28.223282195859156 22.130613095248098 24-25 22.154492633587967 27.452686843973595 28.28027109447634 22.1125494279621 26-27 22.15024878355466 27.585802341128723 28.20791338537269 22.05603548994393 28-29 22.121484508033443 27.512044888034808 28.251749625961647 22.114720977970105 30-31 22.270926093326835 27.5121631126297 28.1317965266971 22.085114267346366 32-33 22.10300722299902 27.67352663816452 28.118653470370475 22.104812668465982 34-35 22.241583817667486 27.64947198087287 28.171943055111043 21.937001146348603 36-37 22.22104341249375 27.569993954346707 28.06165445276994 22.147308180389608 38-39 22.097780291622986 27.664632703561526 28.170133152421112 22.06745385239438 40-41 22.290500160125845 27.54298324292514 28.065941401499856 22.100575195449156 42-43 22.1840974778381 27.64682351481596 27.890173995136013 22.278905012209922 44-45 22.209598878253388 27.703739246744984 27.81325878092081 22.273403094080816 46-47 22.304918324495276 27.64182892459966 27.610728740805513 22.44252401009955 48-49 22.20859664636797 27.72616877642499 27.66573849438947 22.399496082817567 50-51 22.207791313230576 27.794049223278776 27.604599874769452 22.393559588721192 52-53 22.371381617874917 27.695369572185502 27.494128275564204 22.439120534375373 54-55 22.32257290257018 27.61562034671406 27.544839384755992 22.51696736595976 56-57 22.338170937475656 27.74989479111189 27.48897367427866 22.42296059713379 58-59 22.250822798364368 27.751117001315865 27.495511389233897 22.50254881108587 60-61 22.346711964941196 27.758569858225325 27.469022126369637 22.42569605046384 62-63 22.30135957978512 27.862507087677695 27.465044108608488 22.3710892239287 64-65 22.265776093281712 27.778230043313577 27.448884093383967 22.50710977002074 66-67 22.30870503323962 27.85125703050583 27.296926304946073 22.54311163130847 68-69 22.26907885088679 27.861987516078994 27.3128914225642 22.55604221047002 70-71 22.264916715264825 27.630848172020904 27.40787415052315 22.69636096219112 72-73 22.305255829871363 27.682249283936912 27.28687816935928 22.725616716832445 74-75 22.190290221053957 27.75691255119214 27.329416944873763 22.723380282880136 76-77 22.38911981255912 27.68178686436031 27.250438285830526 22.67865503725005 78-79 22.278012170466592 27.675911424855837 27.182071897933007 22.86400450674456 80-81 22.30529238022459 27.76385821113363 27.14462946464593 22.78621994399585 82-83 22.322346819508073 27.696814333334814 27.251230262054943 22.72960858510217 84-85 22.337423148175585 27.743764960269964 27.21752750619687 22.701284385357585 86-87 22.27489241372637 27.737061480784952 27.308281864564893 22.679764240923785 88-89 22.27139351052546 27.678944309678215 27.352280301984017 22.697381877812305 90-91 22.221926458165246 27.753693404655305 27.40616553832679 22.61821459885266 92-93 22.220229626395067 27.67502596291454 27.434551841356935 22.67019256933346 94-95 22.053370902140163 27.733975373179764 27.510452334951513 22.702201389728565 96-97 22.021004636403468 27.80731607762875 27.56186334083545 22.60981594513233 98-99 22.155601826415474 28.364517299874457 27.67772339550972 21.802157478200346 100-101 25.11349401754544 36.18848709838835 28.76514385038468 9.93287503368153 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3196.0 1 2973.5 2 3901.5 3 5358.0 4 6890.0 5 10121.0 6 12863.5 7 14750.5 8 15938.5 9 15741.0 10 14672.0 11 13661.0 12 14933.5 13 19595.5 14 30295.0 15 44782.5 16 56032.0 17 61728.0 18 63462.5 19 62760.5 20 61060.0 21 60822.5 22 63639.5 23 71996.0 24 87290.5 25 109577.5 26 137625.5 27 167569.0 28 200918.5 29 237314.0 30 271177.5 31 304910.5 32 341432.5 33 377069.0 34 411029.5 35 445072.0 36 482122.0 37 513399.0 38 537329.5 39 560042.5 40 581954.5 41 601865.5 42 614381.0 43 628557.5 44 642044.0 45 649524.0 46 655322.0 47 657710.5 48 656652.5 49 652468.0 50 644849.0 51 630735.0 52 608326.0 53 578249.5 54 543582.0 55 508035.5 56 469065.5 57 426347.5 58 381373.0 59 332416.0 60 281733.0 61 231387.0 62 186583.0 63 147440.5 64 111414.5 65 83902.5 66 63650.0 67 48712.0 68 37693.5 69 27975.5 70 20138.5 71 14453.0 72 10100.5 73 6895.5 74 4695.0 75 3173.0 76 2258.5 77 1572.0 78 1089.5 79 776.0 80 521.0 81 345.0 82 252.5 83 181.0 84 135.0 85 102.0 86 77.5 87 58.0 88 36.0 89 26.5 90 22.0 91 15.5 92 11.5 93 6.0 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001243092688283354 3 0.0 4 2.889350572766715E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.003094292880835052 18-19 0.0 20-21 0.002096555590994662 22-23 0.0 24-25 3.159426935075894E-4 26-27 0.0032885134947244743 28-29 0.0 30-31 1.4493618257644625E-4 32-33 7.945249320740349E-4 34-35 7.571642765005035E-4 36-37 0.010177591104306912 38-39 0.011751795727506521 40-41 0.025218728324118162 42-43 0.0019070218479611703 44-45 0.0012353414455274943 46-47 0.001648787663027488 48-49 0.0016343111449819354 50-51 4.814278290245358E-5 52-53 1.0870601754530116E-4 54-55 0.00629975732090778 56-57 0.0037697389642140718 58-59 0.003976820705174832 60-61 0.001631729030257116 62-63 4.889066088592042E-4 64-65 7.762740099315928E-4 66-67 6.314415029496365E-4 68-69 2.096826587157239E-5 70-71 4.262061548942276E-6 72-73 1.6024611724740654E-4 74-75 2.816313602152227E-4 76-77 0.0017398736780146833 78-79 0.002215293906954654 80-81 0.011717495897950151 82-83 0.010164472484867317 84-85 0.01319141730950215 86-87 0.006926761675812586 88-89 0.09191222796428289 90-91 4.436441172560581E-4 92-93 3.654541229516101E-5 94-95 2.2510362001994418E-4 96-97 0.015164724531363957 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 436.0 20-21 1435.0 22-23 2743.0 24-25 5831.0 26-27 8943.0 28-29 19189.0 30-31 42067.0 32-33 57417.0 34-35 82013.0 36-37 130588.0 38-39 140258.0 40-41 142788.0 42-43 159227.0 44-45 183464.0 46-47 185542.0 48-49 176495.0 50-51 166808.0 52-53 152115.0 54-55 169288.0 56-57 173634.0 58-59 180272.0 60-61 182639.0 62-63 172022.0 64-65 183371.0 66-67 192863.0 68-69 191757.0 70-71 188846.0 72-73 182334.0 74-75 183703.0 76-77 183601.0 78-79 195125.0 80-81 197090.0 82-83 189301.0 84-85 189231.0 86-87 198820.0 88-89 210709.0 90-91 225291.0 92-93 239542.0 94-95 299571.0 96-97 384197.0 98-99 1199874.0 100-101 7511797.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.70814888631276 #Duplication Level Percentage of deduplicated Percentage of total 1 90.55170391503091 77.6101892105878 2 6.646359476783431 11.392943351762204 3 1.5466185935227814 3.9767345005197052 4 0.5625612856983231 1.9286434572922961 5 0.26226461760301617 1.1239107446565595 6 0.13682781662122406 0.7036355327256584 7 0.07866095282574256 0.4719319259429578 8 0.054730294108224754 0.37526657568155314 9 0.033259353989148636 0.2565537897208079 >10 0.12042037814507778 1.6448293156091265 >50 0.005094184034047612 0.2943632945619661 >100 0.001456770824910689 0.19832306401266214 >500 4.236081317904585E-5 0.022675236926680872 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.719419936666779E-6 2 0.0 2.015825981000034E-5 0.0 6.719419936666779E-6 6.719419936666779E-6 3 0.0 2.6877679746667117E-5 0.0 6.719419936666779E-6 6.719419936666779E-6 4 0.0 6.0474779430001014E-5 0.0 1.3438839873333558E-5 6.719419936666779E-6 5 0.0 6.71941993666678E-5 0.0 1.3438839873333558E-5 6.719419936666779E-6 6 4.703593955666745E-5 6.71941993666678E-5 0.0 1.3438839873333558E-5 6.719419936666779E-6 7 4.703593955666745E-5 6.71941993666678E-5 0.0 1.3438839873333558E-5 2.015825981000034E-5 8 4.703593955666745E-5 8.063303924000136E-5 0.0 1.3438839873333558E-5 2.6877679746667117E-5 9 4.703593955666745E-5 1.612660784800027E-4 0.0 3.35970996833339E-5 4.703593955666745E-5 10-11 5.039564952500084E-5 1.612660784800027E-4 0.0 3.35970996833339E-5 4.703593955666745E-5 12-13 5.375535949333423E-5 1.612660784800027E-4 0.0 3.695680965166729E-5 4.703593955666745E-5 14-15 5.375535949333423E-5 1.9822288813167E-4 0.0 6.0474779430001014E-5 5.375535949333423E-5 16-17 9.40718791133349E-5 2.0158259810000337E-4 0.0 6.71941993666678E-5 6.0474779430001014E-5 18-19 9.40718791133349E-5 2.2846027784667047E-4 0.0 9.071216914500152E-5 6.71941993666678E-5 20-21 9.40718791133349E-5 2.754962174033379E-4 0.0 1.4110781867000236E-4 7.391361930333458E-5 22-23 9.40718791133349E-5 3.594889666116727E-4 0.0 1.948631781633366E-4 8.399274920833474E-5 24-25 9.40718791133349E-5 3.897263563266732E-4 0.0 3.1245302705500523E-4 8.735245917666814E-5 26-27 9.40718791133349E-5 4.1324432610500693E-4 0.0 5.711506946166762E-4 8.735245917666814E-5 28-29 9.40718791133349E-5 4.1660403607334033E-4 0.0 0.002069581340493368 9.74315890816683E-5 30-31 9.40718791133349E-5 4.837982354400081E-4 0.0 0.00635321155011844 1.0079129905000169E-4 32-33 9.40718791133349E-5 4.837982354400081E-4 0.0 0.014930551099273584 1.0079129905000169E-4 34-35 9.40718791133349E-5 5.913089544266766E-4 0.0 0.027136377414228786 1.0751071898666847E-4 36-37 9.40718791133349E-5 6.988196734133451E-4 0.0 0.04407603507456574 1.0751071898666847E-4 38-39 9.40718791133349E-5 7.122585132866786E-4 0.0 0.07258317415587455 1.0751071898666847E-4 40-41 9.74315890816683E-5 7.794527126533464E-4 0.0 0.11877582651049032 1.1423013892333525E-4 42-43 1.0079129905000169E-4 8.096901023683469E-4 0.0 0.14070129376383403 1.1423013892333525E-4 44-45 1.0079129905000169E-4 8.903231416083483E-4 0.0 0.1737306024625196 1.1423013892333525E-4 46-47 1.0079129905000169E-4 9.407187911333492E-4 0.0 0.21208505146101356 1.1423013892333525E-4 48-49 1.0079129905000169E-4 9.440785011016825E-4 0.0 0.2425475417438924 1.1758984889166863E-4 50-51 1.0415100901833507E-4 0.0010717474798983514 0.0 0.274972102648278 1.2430926882833543E-4 52-53 1.0751071898666847E-4 0.0010885460297400183 0.0 0.30999707906815355 1.3438839873333556E-4 54-55 1.0751071898666847E-4 0.001095265449676685 0.0 0.4027788295536484 1.4110781867000236E-4 56-57 1.0751071898666847E-4 0.0011154237094866853 0.0 0.47407523479165126 1.5118694857500255E-4 58-59 1.0751071898666847E-4 0.0011154237094866853 0.0 0.5494469682212426 1.5454665854333592E-4 60-61 1.0751071898666847E-4 0.001138941679265019 0.0 0.5904488686747832 1.612660784800027E-4 62-63 1.2094955886000203E-4 0.001145661099201686 0.0 0.6108255096327253 1.6798549841666948E-4 64-65 1.2094955886000203E-4 0.0012296538484100207 0.0 0.6314574885482606 1.6798549841666948E-4 66-67 1.2094955886000203E-4 0.001239732978315021 0.0 0.6424874163742991 1.6798549841666948E-4 68-69 1.2094955886000203E-4 0.0012766897879666881 0.0 0.6518240503762975 1.6798549841666948E-4 70-71 1.2094955886000203E-4 0.0012901286278400217 0.0 0.6606802458528244 1.7470491835333627E-4 72-73 1.276689787966688E-4 0.001293488337808355 0.0 0.6684714132693895 1.7470491835333627E-4 74-75 1.276689787966688E-4 0.0013338048574283558 0.0 0.6754932071032063 1.847840482583364E-4 76-77 1.276689787966688E-4 0.0013942796368583569 0.0 0.6817825841639265 1.881437582266698E-4 78-79 1.276689787966688E-4 0.0014245170265733572 0.0 0.6874571343004415 1.881437582266698E-4 80-81 1.276689787966688E-4 0.0014278767365416907 0.0 0.6906488587703583 1.881437582266698E-4 82-83 1.276689787966688E-4 0.0014345961564783574 0.0 0.6927553969205033 1.948631781633366E-4 84-85 1.310286887650022E-4 0.001441315576415024 0.0 0.6945897985632133 1.948631781633366E-4 86-87 1.343883987333356E-4 0.001474912676098358 0.0 0.6948384171008699 1.948631781633366E-4 88-89 1.343883987333356E-4 0.001518588905686692 0.0 0.6949224098500784 2.0158259810000337E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13155 0.0 42.78157 1 GTATCAA 22565 0.0 32.25427 1 TCAACGC 26650 0.0 26.27537 4 ATCAACG 27505 0.0 25.458593 3 CAACGCA 27555 0.0 25.456543 5 AACGCAG 28475 0.0 24.7195 6 TATCAAC 29510 0.0 24.1413 2 GTACATG 37855 0.0 22.257704 1 TACATGG 38615 0.0 21.431131 2 ACATGGG 38585 0.0 20.953682 3 ACGCAGA 34355 0.0 20.417845 7 CGCAGAG 35565 0.0 19.757385 8 CATGGGG 27590 0.0 18.781612 4 AGAGTAC 37050 0.0 16.563898 10-11 GCAGAGT 42115 0.0 16.530546 9 GAGTACT 22880 0.0 16.002949 12-13 CAGAGTA 41030 0.0 15.184461 10-11 ATGGGGG 17020 0.0 14.865475 5 GAGTACA 27085 0.0 14.476237 1 GTACTTT 25965 0.0 14.071268 14-15 >>END_MODULE