##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139718_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7281431 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13870831159424 33.0 31.0 34.0 30.0 34.0 2 32.263836050908125 34.0 31.0 34.0 30.0 34.0 3 32.318242114771124 34.0 31.0 34.0 30.0 34.0 4 35.950818046617485 37.0 35.0 37.0 35.0 37.0 5 35.81787000384952 37.0 35.0 37.0 35.0 37.0 6 35.83510713759424 37.0 35.0 37.0 35.0 37.0 7 35.74790710781988 37.0 35.0 37.0 33.0 37.0 8 35.709238747163845 37.0 35.0 37.0 33.0 37.0 9 37.3364047534063 39.0 37.0 39.0 34.0 39.0 10-11 37.23460347286131 39.0 37.0 39.0 33.0 39.0 12-13 37.191397405262784 39.0 37.0 39.0 33.0 39.0 14-15 38.3834859521432 40.0 38.0 41.0 33.0 41.0 16-17 38.397932974988024 40.0 38.0 41.0 33.0 41.0 18-19 38.38852685687745 40.0 38.0 41.0 33.5 41.0 20-21 38.35646620578029 40.0 38.0 41.0 34.0 41.0 22-23 38.254146966273495 40.0 38.0 41.0 33.0 41.0 24-25 38.16372052602434 40.0 37.5 41.0 33.0 41.0 26-27 37.992135395021265 40.0 37.0 41.0 33.0 41.0 28-29 37.85839082262271 40.0 37.0 41.0 33.0 41.0 30-31 37.708567173025166 40.0 37.0 41.0 32.0 41.0 32-33 37.906089430735626 40.0 37.0 41.0 33.0 41.0 34-35 37.892935017130874 40.0 37.0 41.0 33.0 41.0 36-37 37.80838150381181 40.0 37.0 41.0 33.0 41.0 38-39 37.694562923472375 40.0 37.0 41.0 33.0 41.0 40-41 37.65680116411052 40.0 37.0 41.0 33.0 41.0 42-43 37.54918679450424 40.0 37.0 41.0 32.0 41.0 44-45 37.59595135585129 39.5 36.5 41.0 32.5 41.0 46-47 37.73235383558159 40.0 37.0 41.0 33.0 41.0 48-49 37.66110163279244 40.0 37.0 41.0 32.0 41.0 50-51 37.54001269902527 40.0 36.5 41.0 32.0 41.0 52-53 37.396906186696214 39.0 36.0 41.0 31.0 41.0 54-55 37.288089982630126 39.0 36.0 41.0 31.0 41.0 56-57 37.11935681507958 39.0 35.5 41.0 31.0 41.0 58-59 36.972110148628545 39.0 35.0 40.0 31.0 41.0 60-61 36.73757580457286 38.5 35.0 40.0 31.0 41.0 62-63 36.47754973263061 38.0 35.0 40.0 30.5 41.0 64-65 36.253467605736546 38.0 35.0 40.0 30.0 41.0 66-67 35.95735065566612 37.0 34.0 40.0 30.0 41.0 68-69 35.633891779394745 37.0 34.0 39.5 29.0 41.0 70-71 35.32681199779354 36.0 34.0 39.0 29.0 40.5 72-73 35.01285081816686 36.0 34.0 39.0 29.0 40.0 74-75 34.622036840213866 35.0 33.5 38.0 29.0 40.0 76-77 33.56631899529391 34.5 32.0 37.0 27.5 39.0 78-79 33.903756964801644 35.0 33.0 37.0 28.5 39.0 80-81 33.77444547491652 35.0 33.0 36.0 29.0 39.0 82-83 33.5414204022923 35.0 33.0 36.0 29.0 37.5 84-85 33.318349322098044 35.0 33.0 35.5 29.0 37.0 86-87 33.101276612736186 35.0 32.0 35.0 28.5 37.0 88-89 32.87512847329846 34.0 32.0 35.0 28.0 36.0 90-91 32.72739934311155 34.0 32.0 35.0 27.0 36.0 92-93 32.63400180004683 34.0 32.0 35.0 27.0 36.0 94-95 32.576195412825875 34.0 32.0 35.0 27.0 35.0 96-97 32.51456208933054 34.0 32.0 35.0 27.0 35.0 98-99 32.641213278428346 34.0 32.0 35.0 28.5 35.0 100-101 31.727262442649632 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 18.0 20 61.0 21 322.0 22 1470.0 23 4783.0 24 12016.0 25 25012.0 26 45226.0 27 71440.0 28 101671.0 29 135916.0 30 172462.0 31 216442.0 32 269235.0 33 341004.0 34 449854.0 35 612892.0 36 917472.0 37 1435442.0 38 1583183.0 39 851734.0 40 33775.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.263065185950396 21.46094634420075 13.952710669097874 25.323277800750976 2 14.611355029989683 22.729836567102993 39.41583805281915 23.24297035008818 3 17.30507368675196 26.920051841458086 31.316454142049828 24.45842032974013 4 12.27460234688094 18.84393528779938 38.40131765706335 30.48014470825633 5 12.674816255211372 38.31205706680459 36.23705285403378 12.776073823950265 6 29.930449110895925 38.603661835153005 18.510262611840997 12.955626442110074 7 26.058105886054538 32.64234736276427 23.69852848979823 17.60101826138296 8 24.582681618489552 36.784610058105336 21.536535881477143 17.09617244192797 9 25.683220784485904 15.895941333509855 20.951966721925952 37.46887116007829 10-11 24.064081634502887 26.75546194147826 29.46845201169935 19.7120044123195 12-13 24.751947797074504 24.296906748137832 29.307357303804704 21.64378815098296 14-15 21.88766878378714 25.753694569103242 26.457608401425485 25.901028245684127 16-17 21.806931366174794 28.783832855250303 27.274163107482018 22.135072671092885 18-19 21.86125227307654 28.11593627681152 28.630162120605142 21.392649329506796 20-21 22.526477713053524 27.42070248990937 28.36229099817845 21.690528798858654 22-23 22.199971704190663 27.523210118361646 28.240934695744503 22.035883481703188 24-25 22.090618554108975 27.638599924131434 28.336317286120245 21.934464235639346 26-27 22.13104608177839 27.69974751169778 28.305033525473334 21.864172881050496 28-29 22.036640202624515 27.644200464070444 28.411098982551312 21.90806035075373 30-31 22.279793995539478 27.64746811159064 28.20334200905953 21.869395883810352 32-33 22.059139034306195 27.693514073185266 28.23280992318188 22.014536969326663 34-35 22.068028814892994 27.82432116331594 28.349736865145548 21.757913156645518 36-37 22.182368839040812 27.701930722658215 28.178255449674538 21.937444988626435 38-39 21.93056879830308 27.71392784998164 28.34627580994432 22.009227541770958 40-41 22.135752174227186 27.5955618255256 28.27498530876975 21.99370069147746 42-43 22.146740501120803 27.677630287575628 28.098728217668672 22.07690099363489 44-45 22.12212317369939 27.812966740721436 27.945026574287525 22.119883511291654 46-47 22.289471236896784 27.68764180426031 27.687826764328545 22.335060194514366 48-49 22.176278003635176 27.761321434951082 27.69899964791604 22.363400913497706 50-51 22.08246045584637 27.83060721862554 27.7947227832333 22.292209542294785 52-53 22.26637733226973 27.779805007215653 27.76720282522906 22.186614835285557 54-55 22.19426773574509 27.719366523848166 27.69356638213457 22.39279935827217 56-57 22.33762579999158 27.91900602460159 27.475491925793317 22.267876249613515 58-59 22.148304851985547 28.024528320676083 27.658069954349106 22.16909687298926 60-61 22.32193975550417 28.076859252421578 27.440002381108673 22.161198610965577 62-63 22.230911580053107 28.223601811860817 27.418808686281693 22.12667792180439 64-65 22.202336106751567 28.089044705177457 27.443374515020263 22.265244673050717 66-67 22.29747888517519 28.008148467616216 27.375103216686124 22.31926943052247 68-69 22.285591828956115 27.92826864480182 27.45675798488764 22.329381541354426 70-71 22.285656034679153 27.73707713846636 27.529753426119306 22.447513400735183 72-73 22.28202422250318 27.807600978264812 27.45024023934525 22.460134559886765 74-75 22.15256844221934 27.890898155540462 27.47146441343899 22.485068988801203 76-77 22.29416354705815 27.840412011743528 27.403649823762706 22.461774617435612 78-79 22.23044742028779 27.856190599305787 27.42503244270185 22.488329537704583 80-81 22.260935571796836 27.832383880673994 27.40188255757228 22.50479798995689 82-83 22.22562665652506 27.86553049374834 27.481446430509294 22.427396419217306 84-85 22.29095982865993 27.881229219099453 27.40316462379721 22.424646328443405 86-87 22.183326712749178 27.859864234428294 27.507827598771918 22.448981454050614 88-89 22.222077310032283 27.865547985963808 27.443646495821405 22.468728208182508 90-91 22.240730664404936 27.909439224495454 27.50181787939468 22.348012231704935 92-93 22.231837381597877 27.830398540303424 27.521917785844174 22.415846292254525 94-95 22.048615813927878 27.916657970310414 27.603167279556253 22.431558936205455 96-97 21.985164104388698 27.95831869040462 27.651291084113616 22.405226121093065 98-99 22.119923425765077 28.567611370225453 27.73676684514249 21.575698358866976 100-101 24.97196812650756 36.32670715072864 28.899368464045992 9.801956258717816 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1863.0 1 1711.0 2 2153.0 3 2881.5 4 3752.0 5 5535.5 6 6891.0 7 7779.0 8 8271.5 9 8185.0 10 7784.5 11 7364.5 12 8155.0 13 10837.0 14 16721.0 15 24277.5 16 29886.5 17 32572.0 18 33107.0 19 32611.5 20 31578.0 21 30907.0 22 31996.5 23 36077.0 24 43655.0 25 54434.5 26 68389.5 27 83849.5 28 100325.5 29 118288.0 30 135319.5 31 151956.0 32 169522.5 33 186913.0 34 202831.0 35 217879.5 36 235230.5 37 251399.0 38 263641.0 39 275078.5 40 286720.0 41 297837.0 42 305263.5 43 311986.0 44 318774.0 45 323628.5 46 330273.0 47 336622.5 48 335926.5 49 330328.5 50 323689.5 51 313294.5 52 298718.0 53 281424.0 54 263590.0 55 244452.0 56 224249.5 57 203404.5 58 180674.5 59 156167.0 60 131726.0 61 108756.0 62 87579.0 63 68419.5 64 51571.5 65 38797.5 66 29324.5 67 22354.5 68 16934.5 69 12389.0 70 9049.0 71 6538.5 72 4629.5 73 3261.5 74 2314.0 75 1655.5 76 1199.5 77 829.5 78 555.0 79 368.0 80 240.0 81 161.5 82 121.0 83 86.5 84 61.5 85 47.5 86 39.0 87 28.5 88 18.5 89 14.5 90 10.0 91 6.0 92 4.5 93 3.5 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012909550334268085 3 0.0 4 3.021384120786148E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0036943287658703352 18-19 0.0 20-21 0.0023348256760779597 22-23 0.0 24-25 3.7783005877180915E-4 26-27 0.0037524414064177883 28-29 0.0 30-31 1.1712457783479371E-4 32-33 8.777952161819544E-4 34-35 9.37316051724849E-4 36-37 0.009788164542961232 38-39 0.011145962341612099 40-41 0.025257043181771344 42-43 0.0018951137410518025 44-45 0.0012110080043981476 46-47 0.0017459925586684943 48-49 0.0017630145357922708 50-51 2.2807898648996932E-5 52-53 1.2317328248329654E-4 54-55 0.006917515914575931 56-57 0.004177203292775432 58-59 0.004448925134869085 60-61 0.0019244206617218297 62-63 5.712534816450875E-4 64-65 9.2462297027396E-4 66-67 7.519817924699449E-4 68-69 0.0 70-71 0.0 72-73 1.1669934397912626E-4 74-75 2.553901225498624E-4 76-77 0.001511072546314837 78-79 0.0019989000392519854 80-81 0.011510586379414656 82-83 0.009971152088418703 84-85 0.013165869051848446 86-87 0.006782343643408094 88-89 0.08564215169985347 90-91 4.649691699021652E-4 92-93 5.408524223590123E-5 94-95 1.7762738659046453E-4 96-97 0.015070514962482802 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 231.0 20-21 711.0 22-23 1389.0 24-25 2884.0 26-27 4527.0 28-29 9536.0 30-31 21552.0 32-33 29499.0 34-35 43377.0 36-37 66420.0 38-39 71997.0 40-41 71060.0 42-43 81712.0 44-45 94017.0 46-47 95037.0 48-49 89695.0 50-51 82904.0 52-53 81739.0 54-55 89591.0 56-57 93881.0 58-59 94351.0 60-61 93875.0 62-63 90144.0 64-65 94081.0 66-67 100207.0 68-69 93668.0 70-71 91442.0 72-73 88070.0 74-75 88336.0 76-77 89113.0 78-79 94370.0 80-81 94536.0 82-83 90398.0 84-85 91558.0 86-87 95874.0 88-89 101654.0 90-91 108064.0 92-93 114449.0 94-95 142139.0 96-97 184114.0 98-99 573879.0 100-101 3635350.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.64729079584868 #Duplication Level Percentage of deduplicated Percentage of total 1 91.98898993091449 81.54574740422173 2 5.851038648939812 10.373574491406343 3 1.2676438935925523 3.3711959058264256 4 0.4305260477072035 1.5265987098515157 5 0.17577968364028165 0.7791196365831166 6 0.10529636487324698 0.5600542485998705 7 0.053391628030329874 0.33131162232479067 8 0.0330522899429673 0.23439967664343414 9 0.024137499517339334 0.19257515449184134 >10 0.06837385318810253 0.951651218394425 >50 0.001633927015755712 0.0941405762571032 >100 9.187454952034208E-5 0.018908537164183253 >500 4.43580885033938E-5 0.02072281823518065 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.373356418539158E-5 0.0 0.0 0.0 3 0.0 1.373356418539158E-5 0.0 1.373356418539158E-5 0.0 4 1.373356418539158E-5 5.493425674156632E-5 0.0 1.373356418539158E-5 0.0 5 2.746712837078316E-5 5.493425674156632E-5 0.0 2.746712837078316E-5 0.0 6 9.613494929774107E-5 5.493425674156632E-5 0.0 2.746712837078316E-5 0.0 7 1.0986851348313264E-4 5.493425674156632E-5 0.0 4.120069255617474E-5 0.0 8 1.2360207766852423E-4 5.493425674156632E-5 0.0 4.120069255617474E-5 1.373356418539158E-5 9 1.2360207766852423E-4 1.5106920603930737E-4 0.0 5.493425674156632E-5 1.373356418539158E-5 10-11 1.2360207766852423E-4 1.5106920603930737E-4 0.0 6.180103883426211E-5 1.373356418539158E-5 12-13 1.2360207766852423E-4 1.5106920603930737E-4 0.0 6.866782092695791E-5 1.373356418539158E-5 14-15 1.2360207766852423E-4 2.060034627808737E-4 0.0 6.866782092695791E-5 2.060034627808737E-5 16-17 1.7166955231739475E-4 2.060034627808737E-4 0.0 9.613494929774107E-5 2.746712837078316E-5 18-19 1.7853633441009055E-4 2.3347059115165687E-4 0.0 1.0986851348313264E-4 3.4333910463478953E-5 20-21 1.7853633441009055E-4 2.6093771952244004E-4 0.0 1.3733564185391581E-4 4.120069255617474E-5 22-23 1.7853633441009055E-4 3.433391046347895E-4 0.0 1.7853633441009055E-4 4.120069255617474E-5 24-25 2.060034627808737E-4 4.3947405393253056E-4 0.0 2.1973702696626528E-4 4.120069255617474E-5 26-27 2.3347059115165687E-4 4.6694118230331374E-4 0.0 3.296055404493979E-4 4.120069255617474E-5 28-29 2.3347059115165687E-4 4.6694118230331374E-4 0.0 8.720813257723653E-4 4.120069255617474E-5 30-31 2.3347059115165687E-4 5.493425674156633E-4 0.0 0.002581910066853617 4.120069255617474E-5 32-33 2.4033737324435266E-4 5.493425674156633E-4 0.0 0.006049635023664991 4.120069255617474E-5 34-35 2.4720415533704845E-4 5.905432599718379E-4 0.0 0.010856382488552044 4.120069255617474E-5 36-37 2.4720415533704845E-4 6.386107346207084E-4 0.0 0.017359225130334957 4.120069255617474E-5 38-39 2.4720415533704845E-4 6.729446450841874E-4 0.0 0.02619677368363444 4.120069255617474E-5 40-41 2.7467128370783163E-4 7.004117734549706E-4 0.0 0.035075522929490094 4.806747464887053E-5 42-43 2.7467128370783163E-4 7.072785555476665E-4 0.0 0.0428967877330706 5.493425674156632E-5 44-45 2.8153806580052737E-4 7.622128122892327E-4 0.0 0.05299782419142611 5.493425674156632E-5 46-47 2.8840484789322316E-4 8.102802869381032E-4 0.0 0.06401900945020285 5.493425674156632E-5 48-49 2.8840484789322316E-4 8.171470690307989E-4 0.0 0.07427111511459766 5.493425674156632E-5 50-51 2.8840484789322316E-4 8.789481078650611E-4 0.0 0.08411121385343073 5.493425674156632E-5 52-53 2.9527162998591895E-4 8.789481078650611E-4 0.0 0.09312043195904761 5.493425674156632E-5 54-55 3.0213841207861475E-4 8.995484541431484E-4 0.0 0.10280259470974867 5.493425674156632E-5 56-57 3.0213841207861475E-4 9.201488004212359E-4 0.0 0.11327443740110975 5.493425674156632E-5 58-59 3.0213841207861475E-4 9.201488004212359E-4 0.0 0.12340294098783604 5.493425674156632E-5 60-61 3.0213841207861475E-4 9.270155825139316E-4 0.0 0.13270743072343885 5.493425674156632E-5 62-63 3.1587197626400633E-4 9.476159287920191E-4 0.0 0.14166858135440685 5.493425674156632E-5 64-65 3.1587197626400633E-4 0.001016283749718977 0.0 0.1508769361407119 5.493425674156632E-5 66-67 3.1587197626400633E-4 0.001016283749718977 0.0 0.16077883591837921 5.493425674156632E-5 68-69 3.1587197626400633E-4 0.0010300173139043685 0.0 0.17055713361837804 5.493425674156632E-5 70-71 3.1587197626400633E-4 0.0010300173139043685 0.0 0.17988222370025891 5.493425674156632E-5 72-73 3.296055404493979E-4 0.0010368840959970643 0.0 0.18732581548874117 5.493425674156632E-5 74-75 3.296055404493979E-4 0.0010643512243678475 0.0 0.19402779481121224 5.493425674156632E-5 76-77 3.296055404493979E-4 0.0011261522632021095 0.0 0.2004276357216047 5.493425674156632E-5 78-79 3.296055404493979E-4 0.0011536193915728926 0.0 0.20596226208831753 5.493425674156632E-5 80-81 3.296055404493979E-4 0.0011536193915728926 0.0 0.2089493122986402 5.493425674156632E-5 82-83 3.296055404493979E-4 0.0011604861736655885 0.0 0.21083081059203884 5.493425674156632E-5 84-85 3.433391046347895E-4 0.0012154204304071548 0.0 0.21229343517778304 5.493425674156632E-5 86-87 3.433391046347895E-4 0.0012360207766852422 0.0 0.21262990750032515 5.493425674156632E-5 88-89 3.433391046347895E-4 0.0012909550334268085 0.0 0.21266424141078863 5.493425674156632E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7105 0.0 41.61946 1 GTATCAA 11850 0.0 31.277636 1 TCAACGC 14040 0.0 25.566547 4 CTTATAC 6450 0.0 25.04662 1 CAACGCA 14420 0.0 24.948687 5 ATCAACG 14495 0.0 24.819597 3 AACGCAG 14905 0.0 24.13687 6 TATCAAC 15550 0.0 23.498564 2 GTACATG 19795 0.0 21.919197 1 TATACAC 8690 0.0 21.696394 3 TACATGG 19685 0.0 21.652832 2 ACATGGG 20250 0.0 20.51139 3 ACGCAGA 17845 0.0 20.115118 7 CGCAGAG 18130 0.0 19.821135 8 CATGGGG 13590 0.0 18.112701 4 TTATACA 9455 0.0 18.10889 2 TATGCCG 4915 0.0 16.85399 42-43 ACATCTC 9510 0.0 16.817888 8 ACACATC 9790 0.0 16.707243 6 TACACAT 11385 0.0 16.525146 5 >>END_MODULE