##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139716_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10794328 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13605274918457 33.0 31.0 34.0 30.0 34.0 2 32.261676873261585 34.0 31.0 34.0 30.0 34.0 3 32.31774103955337 34.0 31.0 34.0 30.0 34.0 4 35.951503882409355 37.0 35.0 37.0 35.0 37.0 5 35.814842109670934 37.0 35.0 37.0 35.0 37.0 6 35.832810064693234 37.0 35.0 37.0 35.0 37.0 7 35.743650924819036 37.0 35.0 37.0 33.0 37.0 8 35.70539379570456 37.0 35.0 37.0 33.0 37.0 9 37.335263482821716 39.0 37.0 39.0 34.0 39.0 10-11 37.2296794205253 39.0 37.0 39.0 33.0 39.0 12-13 37.1896980988534 39.0 37.0 39.0 33.0 39.0 14-15 38.38136361985665 40.0 38.0 41.0 33.0 41.0 16-17 38.393685276193196 40.0 38.0 41.0 33.0 41.0 18-19 38.386099301410894 40.0 38.0 41.0 33.5 41.0 20-21 38.35311645676461 40.0 38.0 41.0 34.0 41.0 22-23 38.249687414784404 40.0 38.0 41.0 33.0 41.0 24-25 38.16065579310079 40.0 37.5 41.0 33.0 41.0 26-27 37.99153392577313 40.0 37.0 41.0 33.0 41.0 28-29 37.85561541987358 40.0 37.0 41.0 33.0 41.0 30-31 37.70335237600631 40.0 37.0 41.0 32.0 41.0 32-33 37.908134399667716 40.0 37.0 41.0 33.0 41.0 34-35 37.89675205390208 40.0 37.0 41.0 33.0 41.0 36-37 37.8125612004324 40.0 37.0 41.0 33.0 41.0 38-39 37.704766161901006 40.0 37.0 41.0 33.0 41.0 40-41 37.660395757763226 40.0 37.0 41.0 33.0 41.0 42-43 37.55307565623343 40.0 37.0 41.0 32.0 41.0 44-45 37.595698390405964 39.5 36.5 41.0 32.5 41.0 46-47 37.730420242160726 40.0 37.0 41.0 32.5 41.0 48-49 37.65812631261153 40.0 37.0 41.0 32.0 41.0 50-51 37.53439937231917 40.0 36.5 41.0 32.0 41.0 52-53 37.386523255856545 39.0 36.0 41.0 31.0 41.0 54-55 37.27379069582353 39.0 36.0 41.0 31.0 41.0 56-57 37.10644511041604 39.0 35.5 41.0 31.0 41.0 58-59 36.956201924318975 39.0 35.0 40.0 31.0 41.0 60-61 36.72425106133886 38.5 35.0 40.0 31.0 41.0 62-63 36.45898985916921 38.0 35.0 40.0 30.5 41.0 64-65 36.23179872255996 38.0 34.5 40.0 30.0 41.0 66-67 35.93615408508335 37.0 34.0 40.0 30.0 41.0 68-69 35.61027538485021 37.0 34.0 39.0 29.0 41.0 70-71 35.305052447721835 36.0 34.0 39.0 29.0 40.5 72-73 34.993668098130485 36.0 34.0 39.0 29.0 40.0 74-75 34.60505245753059 35.0 33.5 38.0 29.0 40.0 76-77 33.548645868137854 34.5 32.0 37.0 27.5 39.0 78-79 33.8864399937417 35.0 33.0 37.0 28.5 39.0 80-81 33.7609011740968 35.0 33.0 36.0 29.0 39.0 82-83 33.53409033669753 35.0 33.0 36.0 29.0 37.5 84-85 33.311604915318526 35.0 33.0 35.5 29.0 37.0 86-87 33.100081169856 35.0 32.0 35.0 28.5 37.0 88-89 32.87171455943614 34.0 32.0 35.0 28.0 36.0 90-91 32.727981486894784 34.0 32.0 35.0 27.0 36.0 92-93 32.63618096457175 34.0 32.0 35.0 27.0 36.0 94-95 32.582910207682644 34.0 32.0 35.0 27.0 35.0 96-97 32.51879237620075 34.0 32.0 35.0 27.0 35.0 98-99 32.64631407998249 34.0 32.0 35.0 29.0 35.0 100-101 31.721854035481662 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 16.0 20 93.0 21 516.0 22 2069.0 23 6951.0 24 17846.0 25 37703.0 26 67112.0 27 106719.0 28 152180.0 29 201843.0 30 257355.0 31 321276.0 32 399557.0 33 505241.0 34 668095.0 35 915831.0 36 1371482.0 37 2129222.0 38 2340972.0 39 1243260.0 40 48987.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.36262637192422 21.34766518119516 13.97016099566365 25.319547451216973 2 14.690192012341441 22.63828303379907 39.29237196042838 23.379152993431106 3 17.334464915277728 26.83001665319045 31.27324832078477 24.56227011074705 4 12.375853390689562 18.631315767385992 38.44281988243048 30.550010959493967 5 12.762767631296734 38.206046731209206 36.208071498290586 12.82311413920348 6 30.204325827416028 38.49291961481993 18.409362769039443 12.893391788724598 7 26.134067817839146 32.62089126808079 23.78167496855756 17.4633659455225 8 24.663851237427657 36.70971458343678 21.467709708283834 17.15872447085173 9 25.72821578147338 15.861478361598797 20.99130209865774 37.41900375827009 10-11 24.096252216905025 26.720889896990347 29.441332522043055 19.74152536406157 12-13 24.757316990923382 24.288895056737207 29.305321276136876 21.64846667620254 14-15 21.93206005969061 25.71097524551783 26.476636618787204 25.88032807600436 16-17 21.85121948519267 28.6960425693609 27.29302187088789 22.159716074558546 18-19 21.879324030175848 28.09792791176996 28.587967680804216 21.43478037724998 20-21 22.560353601528533 27.4192338741637 28.339254347372012 21.681158176935753 22-23 22.251778549059026 27.430815749215746 28.20191065608019 22.115495045645037 24-25 22.12205100463743 27.541468080593788 28.288937772010573 22.0475431427582 26-27 22.13550042533662 27.66518243116385 28.218347190576303 21.980969952923232 28-29 22.02719038880717 27.634675175088642 28.283267769564326 22.05486666653987 30-31 22.325115419713097 27.525202199111508 28.206979924062914 21.94270245711248 32-33 22.044075622398854 27.748303501970916 28.156455828127353 22.051165047502877 34-35 22.168779404141603 27.74272582434587 28.217920300073747 21.87057447143878 36-37 22.26212774894339 27.623281982552566 28.091870543207737 22.02271972529631 38-39 22.047874801350236 27.712346815787892 28.215095740801573 22.0246826420603 40-41 22.244463845803082 27.57133803226338 28.147592018577893 22.036606103355638 42-43 22.189796112490466 27.625340443416025 28.00905390216583 22.175809541927684 44-45 22.207893689863976 27.741671327750577 27.871187989269547 22.179246993115903 46-47 22.362073958890903 27.636773453380364 27.624640164849417 22.376512422879312 48-49 22.19504758978534 27.753113406217985 27.66085143551622 22.39098756848045 50-51 22.175142853330158 27.858711651394774 27.639903619346423 22.326241875928645 52-53 22.33043641539607 27.78852978662993 27.58797034633108 22.293063451642926 54-55 22.28347538553663 27.721879453683734 27.550907274366914 22.44373788641272 56-57 22.364849393040885 27.868144924597498 27.430365803391382 22.33663987897023 58-59 22.258517065637797 27.900072961339124 27.56931381166134 22.272096161361738 60-61 22.402281363199933 27.936038162895926 27.40861528908684 22.253065184817306 62-63 22.331948677621014 28.029305230856146 27.38510863396897 22.253637457553875 64-65 22.324886606723172 27.936863038374955 27.387482491676675 22.350767863225197 66-67 22.34552161329022 27.928932729351096 27.30577181912167 22.41977383823701 68-69 22.32057169952774 27.88767296028693 27.36507515973747 22.426680180447857 70-71 22.299570364483337 27.684594981248623 27.47442055635061 22.541414097917432 72-73 22.355138850030187 27.722596250792243 27.427607365466166 22.494657533711408 74-75 22.20461889339244 27.863827904983303 27.37128206938128 22.560271132242978 76-77 22.361804804044823 27.77787017593202 27.32746227186844 22.532862748154724 78-79 22.315846718059575 27.796483741653955 27.28363400051201 22.604035539774465 80-81 22.350058842918102 27.786138108406313 27.322727234461254 22.541075814214338 82-83 22.308415327362695 27.779560790087103 27.4030736514947 22.508950231055493 84-85 22.350605410733554 27.780313827874203 27.344038469223293 22.525042292168955 86-87 22.25100529525484 27.814540111380726 27.420012727171223 22.514441866193216 88-89 22.283229219284856 27.79527610851773 27.351214660052026 22.57028001214539 90-91 22.31527587039831 27.806273695166883 27.415416326260257 22.463034108174554 92-93 22.28014873227958 27.779476438760227 27.43793223003494 22.502442598925256 94-95 22.11396956465895 27.847208559373566 27.527969346383347 22.51085252958414 96-97 22.033294203986646 27.889322788842406 27.584422679289457 22.492960327881494 98-99 22.188294178821078 28.483176904279144 27.643926261514185 21.684602655385596 100-101 25.108234915911183 36.260718131593855 28.74968043037774 9.881366522117224 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2566.0 1 2356.5 2 2965.5 3 3972.0 4 5105.5 5 7482.0 6 9381.5 7 10644.0 8 11427.0 9 11303.5 10 10759.0 11 10381.0 12 11485.5 13 14979.0 14 23020.0 15 33489.0 16 41500.5 17 45700.0 18 46745.5 19 46044.5 20 44736.5 21 44414.5 22 46400.5 23 52657.0 24 64012.0 25 80001.0 26 100411.0 27 123720.5 28 149057.0 29 175439.5 30 200497.5 31 225281.0 32 250906.0 33 275381.5 34 298961.0 35 322363.5 36 348162.0 37 371272.5 38 390453.0 39 407546.0 40 423213.0 41 439237.0 42 450983.0 43 461981.5 44 472470.5 45 478695.5 46 485046.0 47 489351.5 48 486470.0 49 478957.0 50 470262.0 51 457014.5 52 435940.5 53 412541.0 54 389079.5 55 363404.0 56 335256.0 57 304017.5 58 271479.0 59 237067.5 60 200385.0 61 164970.0 62 133052.0 63 104831.5 64 80071.5 65 60461.5 66 45495.0 67 34865.0 68 26736.0 69 19638.0 70 14214.5 71 10216.0 72 7161.5 73 4950.0 74 3386.0 75 2254.0 76 1522.5 77 1050.0 78 733.0 79 495.5 80 337.0 81 237.0 82 173.0 83 124.5 84 91.5 85 66.5 86 52.0 87 43.0 88 31.0 89 22.0 90 17.0 91 12.5 92 9.5 93 6.5 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001167279704674529 3 0.0 4 3.1498023776931733E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0034045658053007094 18-19 0.0 20-21 0.0021586363310631056 22-23 0.0 24-25 2.965662677093504E-4 26-27 0.003221792109112596 28-29 0.0 30-31 1.533366757630939E-4 32-33 7.644029123005199E-4 34-35 6.132591305389939E-4 36-37 0.009788207599164746 38-39 0.011311736668859089 40-41 0.023980605685152135 42-43 0.0020042810083503782 44-45 0.0013751011129037082 46-47 0.0018470935162038893 48-49 0.0018117962572023949 50-51 6.13537427240213E-5 52-53 1.0868735435571041E-4 54-55 0.006300647284051474 56-57 0.00375864621537819 58-59 0.0038464532545067565 60-61 0.001708364915725866 62-63 5.555926567985262E-4 64-65 8.62513197720327E-4 66-67 6.127517650973158E-4 68-69 1.1640444141146206E-5 70-71 5.915074087190204E-6 72-73 1.5626933645214875E-4 74-75 3.053061662136839E-4 76-77 0.0014087072380556986 78-79 0.002303740700540407 80-81 0.01190661767625746 82-83 0.010422174619119567 84-85 0.013465078897238006 86-87 0.007325625192933566 88-89 0.08133006306452785 90-91 4.7362716691497924E-4 92-93 5.7881457617170886E-5 94-95 2.3757832846124524E-4 96-97 0.014692470013114162 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 294.0 20-21 1068.0 22-23 1908.0 24-25 3826.0 26-27 6406.0 28-29 13190.0 30-31 30827.0 32-33 42541.0 34-35 61140.0 36-37 95621.0 38-39 104106.0 40-41 102685.0 42-43 116672.0 44-45 136237.0 46-47 137562.0 48-49 130178.0 50-51 120012.0 52-53 119213.0 54-55 131435.0 56-57 136976.0 58-59 136885.0 60-61 134300.0 62-63 128951.0 64-65 134639.0 66-67 142658.0 68-69 137866.0 70-71 135605.0 72-73 130625.0 74-75 131133.0 76-77 133272.0 78-79 139621.0 80-81 140828.0 82-83 134284.0 84-85 135371.0 86-87 142732.0 88-89 150893.0 90-91 160946.0 92-93 170306.0 94-95 211422.0 96-97 273916.0 98-99 857785.0 100-101 5438393.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.21367562299143 #Duplication Level Percentage of deduplicated Percentage of total 1 91.67249212611611 80.86767483964442 2 6.080904153130765 10.728378129175574 3 1.3162525728014873 3.483344324851149 4 0.44542069706449683 1.57168787546457 5 0.19865396323479495 0.8761998137007933 6 0.09833299265346587 0.5204588830182503 7 0.05343759963695112 0.3299748956311704 8 0.0333090467755278 0.23506507580539657 9 0.024112566739160526 0.1914352326689435 >10 0.07499372135973317 1.0440523490295883 >50 0.0017614460475671259 0.10426425564025546 >100 3.2911443989966133E-4 0.04746432536990155 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.852824928054808E-5 0.0 0.0 0.0 3 0.0 1.852824928054808E-5 0.0 9.26412464027404E-6 0.0 4 0.0 5.5584747841644244E-5 0.0 5.5584747841644244E-5 0.0 5 0.0 8.337712176246636E-5 0.0 5.5584747841644244E-5 0.0 6 4.63206232013702E-5 8.337712176246636E-5 0.0 5.5584747841644244E-5 0.0 7 4.63206232013702E-5 8.337712176246636E-5 0.0 7.411299712219232E-5 0.0 8 4.63206232013702E-5 9.26412464027404E-5 0.0 8.337712176246636E-5 0.0 9 4.63206232013702E-5 1.7601836816520677E-4 0.0 1.4822599424438464E-4 0.0 10-11 4.63206232013702E-5 1.806504304853438E-4 0.0 1.7601836816520677E-4 0.0 12-13 4.63206232013702E-5 1.852824928054808E-4 0.0 2.3623517832698803E-4 9.26412464027404E-6 14-15 4.63206232013702E-5 2.3623517832698803E-4 0.0 2.825558015283582E-4 1.852824928054808E-5 16-17 1.2969774496383657E-4 2.4086724064712505E-4 0.0 3.010840508089063E-4 1.852824928054808E-5 18-19 1.2969774496383657E-4 2.686596145679472E-4 0.0 3.5203673633041354E-4 2.7792373920822122E-5 20-21 1.2969774496383657E-4 3.1034817544918036E-4 0.0 3.8446117257137267E-4 2.7792373920822122E-5 22-23 1.343298072839736E-4 3.5203673633041354E-4 0.0 4.771024189741131E-4 3.242443624095914E-5 24-25 1.4359393192424762E-4 3.751970479310986E-4 0.0 5.234230421754832E-4 4.63206232013702E-5 26-27 1.574901188846587E-4 3.890932348915097E-4 0.0 6.299604755386347E-4 4.63206232013702E-5 28-29 1.574901188846587E-4 3.890932348915097E-4 0.0 0.001116327019153022 4.63206232013702E-5 30-31 1.574901188846587E-4 4.4004592041301687E-4 0.0 0.0028626145138446785 4.63206232013702E-5 32-33 1.621221812047957E-4 4.63206232013702E-4 0.0 0.005850294710333057 4.63206232013702E-5 34-35 1.6675424352493272E-4 5.002627305747982E-4 0.0 0.010046943172377195 5.5584747841644244E-5 36-37 1.6675424352493272E-4 5.373192291358944E-4 0.0 0.016619839604651628 5.5584747841644244E-5 38-39 1.6675424352493272E-4 5.512154160963054E-4 0.0 0.025355909140430045 5.5584747841644244E-5 40-41 1.6675424352493272E-4 6.206963508983607E-4 0.0 0.034272629106693805 5.5584747841644244E-5 42-43 1.6675424352493272E-4 6.345925378587717E-4 0.0 0.04223514423500935 5.5584747841644244E-5 44-45 1.7601836816520677E-4 6.948093480205529E-4 0.0 0.051999531605858185 5.5584747841644244E-5 46-47 1.852824928054808E-4 7.318658465816491E-4 0.0 0.06256526575809074 5.5584747841644244E-5 48-49 1.852824928054808E-4 7.503940958621972E-4 0.0 0.07256125624494641 5.5584747841644244E-5 50-51 2.084428044061659E-4 7.920826567434304E-4 0.0 0.08260356735500349 5.5584747841644244E-5 52-53 2.1307486672630292E-4 7.967147190635675E-4 0.0 0.09180747518511574 6.484887248191828E-5 54-55 2.1307486672630292E-4 8.245070929843897E-4 0.0 0.10198411610245678 7.411299712219232E-5 56-57 2.1307486672630292E-4 8.430353422649376E-4 0.0 0.11210517227195615 7.411299712219232E-5 58-59 2.1307486672630292E-4 8.476674045850747E-4 0.0 0.12205484213561048 7.411299712219232E-5 60-61 2.3160311600685103E-4 8.893559654663079E-4 0.0 0.13159689051509274 7.411299712219232E-5 62-63 2.4086724064712505E-4 9.26412464027404E-4 0.0 0.14063404410168007 7.411299712219232E-5 64-65 2.4086724064712505E-4 0.0010190537104301444 0.0 0.15094501482630507 7.411299712219232E-5 66-67 2.501313652873991E-4 0.0010283178350704184 0.0 0.1608205716928372 7.411299712219232E-5 68-69 2.501313652873991E-4 0.0010422140220308295 0.0 0.17031166738679795 7.411299712219232E-5 70-71 2.5939548992767313E-4 0.0010653743336315146 0.0 0.17985834782860036 7.411299712219232E-5 72-73 2.964519884887693E-4 0.0010839025829120627 0.0 0.1876726369626715 7.411299712219232E-5 74-75 2.964519884887693E-4 0.001107062894512748 0.0 0.19461609838055688 7.411299712219232E-5 76-77 2.964519884887693E-4 0.001148751455393981 0.0 0.20100371232002584 7.411299712219232E-5 78-79 2.964519884887693E-4 0.001167279704674529 0.0 0.20696517652604218 7.411299712219232E-5 80-81 2.964519884887693E-4 0.0011765438293148032 0.0 0.2101798277762173 7.411299712219232E-5 82-83 2.964519884887693E-4 0.0011765438293148032 0.0 0.21221793519707757 8.337712176246636E-5 84-85 2.964519884887693E-4 0.0012182323901960362 0.0 0.21396422269176923 8.337712176246636E-5 86-87 2.964519884887693E-4 0.0012321285771564473 0.0 0.21420045787009623 8.337712176246636E-5 88-89 2.964519884887693E-4 0.0012413927017967214 0.0 0.2143347876773802 8.337712176246636E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9590 0.0 44.543816 1 GTATCAA 16690 0.0 31.720936 1 TCAACGC 19615 0.0 25.980513 4 ATCAACG 20135 0.0 25.309551 3 CAACGCA 20330 0.0 25.046793 5 AACGCAG 21050 0.0 24.228483 6 TATCAAC 21675 0.0 23.828833 2 GTACATG 27260 0.0 21.42264 1 TACATGG 27705 0.0 20.801394 2 ACGCAGA 25030 0.0 20.392076 7 ACATGGG 27620 0.0 20.221125 3 CGCAGAG 25650 0.0 19.930681 8 CTTATAC 8020 0.0 18.191305 1 CATGGGG 19820 0.0 18.106323 4 AGAGTAC 27215 0.0 16.283411 10-11 GAGTACT 16850 0.0 16.094137 12-13 TATACAC 11565 0.0 16.039396 3 GCAGAGT 31385 0.0 15.953947 9 CAGAGTA 30250 0.0 15.123981 10-11 TATGCCG 4880 0.0 14.89541 42-43 >>END_MODULE