##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139715_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6960896 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12762121428046 33.0 31.0 34.0 30.0 34.0 2 32.25024651998823 33.0 31.0 34.0 30.0 34.0 3 32.30420422888088 34.0 31.0 34.0 30.0 34.0 4 35.942420630907286 37.0 35.0 37.0 35.0 37.0 5 35.807619737459085 37.0 35.0 37.0 35.0 37.0 6 35.82521258757493 37.0 35.0 37.0 35.0 37.0 7 35.73766250781509 37.0 35.0 37.0 33.0 37.0 8 35.69947532616491 37.0 35.0 37.0 33.0 37.0 9 37.326813674561436 39.0 37.0 39.0 34.0 39.0 10-11 37.22083328065813 39.0 37.0 39.0 33.0 39.0 12-13 37.17981729650896 39.0 37.0 39.0 33.0 39.0 14-15 38.370330486190284 40.0 38.0 41.0 33.0 41.0 16-17 38.38671997110717 40.0 38.0 41.0 33.0 41.0 18-19 38.37537401794252 40.0 38.0 41.0 33.5 41.0 20-21 38.343254749288846 40.0 38.0 41.0 34.0 41.0 22-23 38.24087057591054 40.0 38.0 41.0 33.0 41.0 24-25 38.153566403238756 40.0 37.5 41.0 33.0 41.0 26-27 37.98150636589371 40.0 37.0 41.0 33.0 41.0 28-29 37.84527374072397 40.0 37.0 41.0 33.0 41.0 30-31 37.696902730464004 40.0 37.0 41.0 32.0 41.0 32-33 37.89201240203246 40.0 37.0 41.0 33.0 41.0 34-35 37.87265104152851 40.0 37.0 41.0 33.0 41.0 36-37 37.787962559217206 40.0 37.0 41.0 33.0 41.0 38-39 37.67862448592251 40.0 37.0 41.0 32.5 41.0 40-41 37.62733103059277 40.0 37.0 41.0 32.0 41.0 42-43 37.51723559084255 40.0 36.5 41.0 32.0 41.0 44-45 37.55913991879911 39.5 36.5 41.0 32.5 41.0 46-47 37.69869224939191 40.0 37.0 41.0 32.5 41.0 48-49 37.625209083713784 40.0 37.0 41.0 32.0 41.0 50-51 37.502064665837054 40.0 36.0 41.0 32.0 41.0 52-53 37.34781831324241 39.0 36.0 41.0 31.0 41.0 54-55 37.23784912112053 39.0 36.0 41.0 31.0 41.0 56-57 37.06462700294385 39.0 35.0 40.5 31.0 41.0 58-59 36.909790520344146 39.0 35.0 40.0 31.0 41.0 60-61 36.6752259941272 38.0 35.0 40.0 31.0 41.0 62-63 36.40553410429316 38.0 35.0 40.0 30.0 41.0 64-65 36.177632246907365 38.0 34.5 40.0 30.0 41.0 66-67 35.87762714292219 37.0 34.0 40.0 29.5 41.0 68-69 35.549927451607985 36.5 34.0 39.0 29.0 41.0 70-71 35.2465885117735 36.0 34.0 39.0 29.0 40.5 72-73 34.93466630451914 36.0 34.0 39.0 29.0 40.0 74-75 34.54704405730045 35.0 33.0 38.0 29.0 40.0 76-77 33.49424214352803 34.5 31.5 36.5 27.5 39.0 78-79 33.83962052853042 35.0 33.0 37.0 28.5 39.0 80-81 33.718335178926395 35.0 33.0 36.0 29.0 39.0 82-83 33.492746245635615 35.0 33.0 36.0 29.0 37.5 84-85 33.27062037610141 35.0 32.5 35.5 28.5 37.0 86-87 33.05923102285301 34.5 32.0 35.0 28.0 37.0 88-89 32.83025595023751 34.0 32.0 35.0 27.0 36.0 90-91 32.68597722833813 34.0 32.0 35.0 27.0 36.0 92-93 32.5904330495586 34.0 32.0 35.0 27.0 36.0 94-95 32.53270699938356 34.0 32.0 35.0 27.0 35.0 96-97 32.47052332821109 34.0 32.0 35.0 27.0 35.0 98-99 32.604644773633765 34.0 32.0 35.0 28.5 35.0 100-101 31.684934992884283 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 51.0 21 317.0 22 1377.0 23 4556.0 24 11616.0 25 24744.0 26 44582.0 27 69624.0 28 99789.0 29 132862.0 30 169898.0 31 210639.0 32 262168.0 33 330777.0 34 436490.0 35 598992.0 36 895255.0 37 1381775.0 38 1485327.0 39 770613.0 40 29437.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.32044093174213 21.47413206575705 13.982697055091759 25.222729947409068 2 14.716993709215457 22.611081429090866 39.3636120587569 23.308312802936783 3 17.50322084972969 26.78512938564231 31.079691465006803 24.6319582996212 4 12.40520044115169 18.54553833852114 38.40790901023737 30.6413522100898 5 12.800119409915045 38.12927243849067 36.20990746018904 12.860700691405244 6 30.323912323930713 38.48191382258835 18.304913620315546 12.889260233165386 7 26.224540633849436 32.473218964914864 23.77583288128425 17.526407519951455 8 24.59141754164981 36.93587722040381 21.364620301754258 17.10808493619212 9 25.610955830973488 15.924975750248244 20.997828440476628 37.466239978301644 10-11 24.180536528630796 26.725122742819313 29.40111445423118 19.69322627431871 12-13 24.792907407322275 24.266531205178186 29.31534963315067 21.625211754348868 14-15 21.90441431677761 25.745083678882718 26.424608268820567 25.925893735519107 16-17 21.841392968911567 28.760293498726085 27.271185487376275 22.127128044986073 18-19 21.8882813361958 28.098530706391823 28.624332269868706 21.388855687543675 20-21 22.52004628474948 27.454488195492438 28.365909563714226 21.659555956043857 22-23 22.275301125490667 27.446884158221156 28.20466123530473 22.073153480983443 24-25 22.10483910896336 27.539637729914784 28.32081210861966 22.034711052502193 26-27 22.150931741587453 27.636656223638113 28.231382602055334 21.9810294327191 28-29 22.115487201401713 27.628965288516564 28.293893125652197 21.961654384429526 30-31 22.27229459154284 27.61548570642571 28.14868870941326 21.963530992618193 32-33 22.151957831151154 27.71326529904291 28.13555507632321 21.99922179348272 34-35 22.23592836091523 27.64561881305065 28.15663191764976 21.96182090838436 36-37 22.18557424309476 27.662385059994456 28.094677969286213 22.057362727624565 38-39 22.03786660482767 27.69079048382207 28.236889146747927 22.03445376460233 40-41 22.25242112374793 27.54090452374997 28.13239780576369 22.07427654673841 42-43 22.14458605718428 27.687157028841003 27.975295819962508 22.192961094012205 44-45 22.218525274581964 27.730813538408032 27.832683107967306 22.217978079042698 46-47 22.304580082719788 27.675467676368648 27.651549629177865 22.368402611733703 48-49 22.17663320238615 27.826389855942494 27.633093556048866 22.36388338562249 50-51 22.187695236268617 27.870455500013787 27.632196652258596 22.309652611459 52-53 22.341601796530416 27.760939145720986 27.55353159860214 22.34392745914646 54-55 22.269047192613147 27.71318008179822 27.581037399736186 22.436735325852446 56-57 22.320215027460467 27.854706283362358 27.452538105104935 22.372540584072244 58-59 22.301586457249034 27.887831597956982 27.436752322303587 22.373829622490398 60-61 22.385449734959206 27.838621703593585 27.44831295766039 22.327615603786814 62-63 22.325211151747602 27.953239115263777 27.408665928962183 22.312883804026438 64-65 22.316511006902104 27.916833603217096 27.378820949260614 22.38783444062019 66-67 22.386644969084813 27.930783647806813 27.26352238000249 22.419049003105883 68-69 22.339888202101676 27.867817913841687 27.36462833413173 22.427665549924907 70-71 22.358253261180803 27.652067619437688 27.421954570002573 22.567724549378934 72-73 22.33829530102782 27.762580068616966 27.36279597116858 22.536328659186633 74-75 22.222219108080555 27.89227698160075 27.381293045807126 22.504210864511577 76-77 22.415655422367617 27.801844254556695 27.326491276576892 22.4560090464988 78-79 22.333286980900162 27.82555850021013 27.289040336838827 22.552114182050882 80-81 22.318222137783554 27.81358624894518 27.32045419061172 22.54773742265954 82-83 22.316863528862598 27.799020694174807 27.38395074168999 22.500165035272605 84-85 22.3608170610784 27.782269318998242 27.382775600421745 22.47413801950161 86-87 22.26307529195587 27.77853961461949 27.459871192349805 22.498513901074833 88-89 22.230216814033252 27.78783431782863 27.419679848248112 22.562269019890007 90-91 22.300583333010433 27.823324881914786 27.432236887708072 22.443854897366712 92-93 22.307348256320203 27.78856855690286 27.450464818316313 22.453618368460624 94-95 22.10980656236125 27.83408600684629 27.549397976021144 22.50670945477131 96-97 22.06184126875855 27.83233190786473 27.642192858391784 22.463633964984933 98-99 22.188011609902823 28.49423358793971 27.698448374841757 21.619306427315706 100-101 25.09577377852425 36.25362910524042 28.813606347696556 9.836990768538772 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1656.0 1 1541.0 2 1997.5 3 2689.0 4 3411.5 5 4895.5 6 6120.5 7 7063.0 8 7649.5 9 7580.0 10 7165.5 11 6765.0 12 7355.5 13 9605.0 14 14794.5 15 21663.0 16 26905.0 17 29519.5 18 30470.0 19 30466.0 20 29826.5 21 29694.5 22 31042.0 23 35208.5 24 42583.5 25 53129.5 26 66646.5 27 81000.0 28 96700.5 29 113918.5 30 129643.0 31 145210.0 32 161200.0 33 176434.0 34 191264.5 35 205531.5 36 221179.0 37 235404.5 38 247455.0 39 257748.5 40 267910.0 41 277727.0 42 283484.0 43 289406.0 44 295795.0 45 300496.0 46 303729.0 47 305678.0 48 305310.5 49 302177.5 50 297180.5 51 289437.5 52 278661.5 53 266800.0 54 253917.0 55 237694.0 56 219946.5 57 201124.0 58 179493.5 59 156439.5 60 132424.0 61 109052.0 62 88188.5 63 69294.0 64 52308.0 65 38747.5 66 28830.5 67 21996.0 68 16885.0 69 12329.0 70 8926.5 71 6371.0 72 4449.0 73 3112.0 74 2099.0 75 1427.5 76 1005.5 77 681.5 78 458.0 79 323.5 80 230.5 81 156.0 82 123.5 83 97.0 84 67.0 85 46.5 86 33.0 87 22.5 88 13.5 89 8.5 90 5.5 91 4.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00113491136773197 3 0.0 4 3.59149167003788E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0036274065867382592 18-19 0.0 20-21 0.002305851439235607 22-23 0.0 24-25 4.311574183759723E-4 26-27 0.0034866393060135614 28-29 0.0 30-31 1.7292806776013407E-4 32-33 9.756394395088732E-4 34-35 7.112271782257653E-4 36-37 0.009831675291173902 38-39 0.010944952563764852 40-41 0.025074014846048896 42-43 0.0018258650693227618 44-45 0.0011703767609990336 46-47 0.001778805737549457 48-49 0.0017630945461010608 50-51 4.739580959428634E-5 52-53 1.1987937258013495E-4 54-55 0.006527834906444478 56-57 0.0037379855733430476 58-59 0.0041223116460955556 60-61 0.0017193179701597196 62-63 5.296545464905559E-4 64-65 7.966132852063458E-4 66-67 6.941163012071121E-4 68-69 0.0 70-71 9.0613517851452E-6 72-73 1.4722279833365875E-4 74-75 2.802719647036699E-4 76-77 0.0012809004179625504 78-79 0.00201542232017539 80-81 0.011382222793077764 82-83 0.009736382695162546 84-85 0.013257800107322146 86-87 0.006731978230581733 88-89 0.08181193459135302 90-91 3.3366416314498494E-4 92-93 3.3032986409899066E-5 94-95 3.388459426756247E-4 96-97 0.01394399954314132 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 218.0 20-21 650.0 22-23 1331.0 24-25 2702.0 26-27 4208.0 28-29 8288.0 30-31 18998.0 32-33 26622.0 34-35 37950.0 36-37 59607.0 38-39 64613.0 40-41 64118.0 42-43 72047.0 44-45 84738.0 46-47 85073.0 48-49 80936.0 50-51 74572.0 52-53 73348.0 54-55 80573.0 56-57 83403.0 58-59 83604.0 60-61 81284.0 62-63 77722.0 64-65 81536.0 66-67 87360.0 68-69 86029.0 70-71 84927.0 72-73 82148.0 74-75 82195.0 76-77 83263.0 78-79 88780.0 80-81 89325.0 82-83 85923.0 84-85 85524.0 86-87 90445.0 88-89 96134.0 90-91 103334.0 92-93 109942.0 94-95 137054.0 96-97 179148.0 98-99 564410.0 100-101 3576814.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.23348217377216 #Duplication Level Percentage of deduplicated Percentage of total 1 91.85144528000187 81.04372859748253 2 5.908050905802951 10.425758085578064 3 1.2872114667639352 3.4072545001977232 4 0.45301432702643313 1.598841261926007 5 0.19302601494468166 0.8515678724347924 6 0.09960487408651965 0.5273090929280251 7 0.06175504365696769 0.3814203780553306 8 0.03822659360225798 0.269829237213509 9 0.023437485677999262 0.18611738772910094 >10 0.08229837248510634 1.16444898041708 >50 0.001566742828007895 0.09166248188100526 >100 3.387043506075333E-4 0.040622492498847716 >500 2.4188772618899593E-5 0.011439631657938565 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.436596668015152E-5 2 0.0 5.746386672060608E-5 0.0 0.0 1.436596668015152E-5 3 0.0 5.746386672060608E-5 0.0 0.0 1.436596668015152E-5 4 0.0 1.1492773344121216E-4 0.0 0.0 1.436596668015152E-5 5 0.0 1.1492773344121216E-4 0.0 1.436596668015152E-5 1.436596668015152E-5 6 2.873193336030304E-5 1.1492773344121216E-4 0.0 1.436596668015152E-5 1.436596668015152E-5 7 2.873193336030304E-5 1.1492773344121216E-4 0.0 2.873193336030304E-5 1.436596668015152E-5 8 2.873193336030304E-5 1.1492773344121216E-4 0.0 2.873193336030304E-5 1.436596668015152E-5 9 2.873193336030304E-5 1.7239160016181826E-4 0.0 4.3097900040454564E-5 4.3097900040454564E-5 10-11 2.873193336030304E-5 1.7239160016181826E-4 0.0 4.3097900040454564E-5 4.3097900040454564E-5 12-13 2.873193336030304E-5 1.7957458350189402E-4 0.0 4.3097900040454564E-5 5.028088338053032E-5 14-15 2.873193336030304E-5 2.729533669228789E-4 0.0 4.3097900040454564E-5 5.746386672060608E-5 16-17 5.746386672060608E-5 2.729533669228789E-4 0.0 4.3097900040454564E-5 7.18298334007576E-5 18-19 5.746386672060608E-5 2.729533669228789E-4 0.0 5.746386672060608E-5 8.619580008090913E-5 20-21 5.746386672060608E-5 2.729533669228789E-4 0.0 1.436596668015152E-4 8.619580008090913E-5 22-23 5.746386672060608E-5 3.0168530028318194E-4 0.0 2.2985546688242432E-4 9.337878342098489E-5 24-25 5.746386672060608E-5 3.2323425030340923E-4 0.0 3.519661836637123E-4 1.0056176676106065E-4 26-27 5.746386672060608E-5 3.30417233643485E-4 0.0 7.613962340480306E-4 1.0056176676106065E-4 28-29 5.746386672060608E-5 3.3760021698356075E-4 0.0 0.003455014986576441 1.0056176676106065E-4 30-31 5.746386672060608E-5 3.5914916700378804E-4 0.0 0.012304450461549777 1.0056176676106065E-4 32-33 5.746386672060608E-5 3.5914916700378804E-4 0.0 0.028624188610201905 1.2929370012136369E-4 34-35 5.746386672060608E-5 4.381619837446214E-4 0.0 0.0528954893163179 1.2929370012136369E-4 36-37 5.746386672060608E-5 5.171748004854547E-4 0.0 0.08227389117722776 1.2929370012136369E-4 38-39 5.746386672060608E-5 5.459067338457578E-4 0.0 0.11856950599463056 1.2929370012136369E-4 40-41 7.18298334007576E-5 6.177365672465154E-4 0.0 0.15085701610827112 1.2929370012136369E-4 42-43 7.18298334007576E-5 6.464685006068185E-4 0.0 0.17648590066566144 1.2929370012136369E-4 44-45 7.901281674083337E-5 7.398472840278033E-4 0.0 0.208205955095436 1.2929370012136369E-4 46-47 8.619580008090913E-5 8.044941340884852E-4 0.0 0.23785012733992866 1.5084265014159097E-4 48-49 8.619580008090913E-5 8.044941340884852E-4 0.0 0.2565402499908058 1.5802563348166673E-4 50-51 1.1492773344121216E-4 8.404090507888639E-4 0.0 0.271919017321908 1.5802563348166673E-4 52-53 1.1492773344121216E-4 8.475920341289397E-4 0.0 0.28333277784928834 1.652086168217425E-4 54-55 1.2211071678128792E-4 8.475920341289397E-4 0.0 0.2955438495274172 1.7239160016181826E-4 56-57 1.2929370012136369E-4 8.763239674892427E-4 0.0 0.3055856602368431 1.7239160016181826E-4 58-59 1.2929370012136369E-4 9.122388841896216E-4 0.0 0.3145428404619175 1.7239160016181826E-4 60-61 1.436596668015152E-4 9.194218675296973E-4 0.0 0.3232917141701298 1.7239160016181826E-4 62-63 1.5802563348166673E-4 9.26604850869773E-4 0.0 0.332033404895002 1.8675756684196978E-4 64-65 1.5802563348166673E-4 0.0010918134676915156 0.0 0.3408900233533154 1.8675756684196978E-4 66-67 1.652086168217425E-4 0.0011205454010518186 0.0 0.350048327111912 1.9394055018204554E-4 68-69 1.7239160016181826E-4 0.0011564603177521974 0.0 0.35901269032032657 2.0830651686219704E-4 70-71 1.7239160016181826E-4 0.0011995582177926518 0.0 0.3679698705454011 2.2267248354234856E-4 72-73 1.8675756684196978E-4 0.0012211071678128792 0.0 0.37512412195211653 2.5858740024272737E-4 74-75 1.8675756684196978E-4 0.0012498391011731822 0.0 0.38168936872494574 2.5858740024272737E-4 76-77 1.8675756684196978E-4 0.0012857540178735612 0.0 0.38737829153028575 2.5858740024272737E-4 78-79 1.8675756684196978E-4 0.001314485951233864 0.0 0.39278707798536283 2.5858740024272737E-4 80-81 1.8675756684196978E-4 0.00132166893457394 0.0 0.3956099904380126 2.729533669228789E-4 82-83 1.8675756684196978E-4 0.0013360349012540916 0.0 0.39752066400647273 2.873193336030304E-4 84-85 1.8675756684196978E-4 0.0013647668346143944 0.0 0.3990219075245486 2.873193336030304E-4 86-87 1.8675756684196978E-4 0.0013647668346143944 0.0 0.39924458000809093 2.873193336030304E-4 88-89 2.154895002022728E-4 0.001407864734654849 0.0 0.3993020438748115 2.945023169431062E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6555 0.0 40.27612 1 GTATCAA 10570 0.0 32.405052 1 TCAACGC 12465 0.0 26.499414 4 ATCAACG 12830 0.0 25.777239 3 CAACGCA 12965 0.0 25.414518 5 AACGCAG 13505 0.0 24.428438 6 TATCAAC 14020 0.0 23.937653 2 GTACATG 17460 0.0 20.852322 1 TACATGG 17200 0.0 20.62356 2 ACGCAGA 16205 0.0 20.358286 7 CGCAGAG 16555 0.0 19.903305 8 ACATGGG 17515 0.0 19.764776 3 CATGGGG 13015 0.0 17.346878 4 AGAGTAC 17685 0.0 16.22868 10-11 GCAGAGT 20630 0.0 15.794384 9 GAGTACT 11225 0.0 15.565679 12-13 CAGAGTA 19605 0.0 15.033592 10-11 TATACCG 415 4.129106E-10 14.703224 5 AGTACTT 12695 0.0 13.715205 12-13 GAGTACA 12655 0.0 13.693771 1 >>END_MODULE