##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139714_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11013013 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.241185495740357 32.0 28.0 33.0 18.0 33.0 2 30.805278264903528 33.0 31.0 33.0 25.0 34.0 3 31.65534554440279 33.0 32.0 33.0 27.0 34.0 4 30.98623746289957 33.0 31.0 33.0 27.0 34.0 5 31.854599372578605 33.0 32.0 33.0 30.0 34.0 6 35.28989596216766 37.0 35.0 38.0 29.0 38.0 7 35.87323223898855 38.0 36.0 38.0 31.0 38.0 8 36.0295780092151 38.0 37.0 38.0 31.0 38.0 9 36.31897674142399 38.0 37.0 38.0 33.0 38.0 10-11 36.45097486037653 38.0 37.5 38.0 33.5 38.0 12-13 36.48757796799114 38.0 38.0 38.0 34.0 38.0 14-15 36.49817279794367 38.0 38.0 38.0 34.0 38.0 16-17 36.48895256911074 38.0 38.0 38.0 34.0 38.0 18-19 36.504627798042186 38.0 38.0 38.0 34.0 38.0 20-21 36.50227327892804 38.0 38.0 38.0 34.0 38.0 22-23 36.49105593794395 38.0 38.0 38.0 34.0 38.0 24-25 36.477721603527385 38.0 38.0 38.0 34.0 38.0 26-27 36.41689652194475 38.0 38.0 38.0 34.0 38.0 28-29 36.39318542714307 38.0 38.0 38.0 33.5 38.0 30-31 36.397436808329964 38.0 38.0 38.0 34.0 38.0 32-33 36.37195686657975 38.0 38.0 38.0 33.0 38.0 34-35 36.32298856787945 38.0 37.5 38.0 33.0 38.0 36-37 36.29897059012357 38.0 37.0 38.0 33.0 38.0 38-39 36.26205201886249 38.0 37.0 38.0 33.0 38.0 40-41 36.29196019377047 38.0 37.0 38.0 33.0 38.0 42-43 36.245972442237246 38.0 37.0 38.0 33.0 38.0 44-45 36.19080395554984 38.0 37.0 38.0 33.0 38.0 46-47 36.14541206049392 38.0 37.0 38.0 33.0 38.0 48-49 36.09384359973646 38.0 37.0 38.0 33.0 38.0 50-51 36.062484446662765 38.0 37.0 38.0 32.5 38.0 52-53 36.03670395355773 38.0 37.0 38.0 32.0 38.0 54-55 35.98860391532786 38.0 37.0 38.0 31.0 38.0 56-57 35.98484401901469 38.0 37.0 38.0 31.0 38.0 58-59 35.95315578941126 38.0 37.0 38.0 31.0 38.0 60-61 35.93437001018199 38.0 37.0 38.0 31.0 38.0 62-63 35.9288532897791 38.0 37.0 38.0 31.0 38.0 64-65 35.91714538051953 38.0 37.0 38.0 31.0 38.0 66-67 35.91780980070315 38.0 37.0 38.0 31.0 38.0 68-69 35.89810275763905 38.0 37.0 38.0 31.0 38.0 70-71 35.867320988620904 38.0 37.0 38.0 31.0 38.0 72-73 35.83827341394223 38.0 37.0 38.0 31.0 38.0 74-75 35.85440665600447 38.0 37.0 38.0 31.0 38.0 76-77 35.834423602758676 38.0 37.0 38.0 31.0 38.0 78-79 35.81717259394638 38.0 37.0 38.0 31.0 38.0 80-81 35.77308538600167 38.0 37.0 38.0 31.0 38.0 82-83 35.772305602134054 38.0 37.0 38.0 31.0 38.0 84-85 35.768805814477666 38.0 37.0 38.0 31.0 38.0 86-87 35.765062469773554 38.0 37.0 38.0 31.0 38.0 88-89 35.73979159089584 38.0 37.0 38.0 31.0 38.0 90-91 35.72067976590822 38.0 37.0 38.0 31.0 38.0 92-93 35.67078004001148 38.0 36.0 38.0 29.5 38.0 94-95 35.66030867705908 38.0 36.0 38.0 29.5 38.0 96-97 35.686786950831305 38.0 36.0 38.0 31.0 38.0 98-99 35.72335821292866 38.0 36.0 38.0 31.0 38.0 100-101 35.201477339752856 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 7.0 19 30.0 20 131.0 21 817.0 22 3600.0 23 10884.0 24 24741.0 25 45433.0 26 73454.0 27 107870.0 28 148974.0 29 197280.0 30 249426.0 31 311492.0 32 386649.0 33 491272.0 34 658486.0 35 970643.0 36 1872397.0 37 5459426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.76093989900857 18.541401885206167 14.355217777369372 23.3424404384159 2 14.35229396351389 20.40005764090172 43.15747198337094 22.09017641221344 3 18.134105651320947 26.763814801681875 30.297133273432987 24.804946273564195 4 12.250907176809834 19.426917956057984 38.05926679647069 30.2629080706615 5 14.029827559422092 37.344509583211824 34.95877724449387 13.666885612872221 6 29.268711477957936 38.18035082679009 18.770939433195984 13.779998262055987 7 26.0744811615132 33.2994885232588 22.67213341162859 17.953896903599407 8 23.997510944552594 37.08381166897742 21.02160416954016 17.897073216929826 9 25.39448559626689 17.384370653153685 21.07217162097239 36.14897212960704 10-11 24.026631040933122 27.038799463870607 28.601845834559537 20.332723660636738 12-13 25.031428728904615 24.50626817565729 28.7575843232002 21.704718772237896 14-15 22.168878761879242 25.7662957448611 26.574367069211668 25.49045842404799 16-17 21.554464704618074 29.095075979661516 27.19749354695214 22.152965768768272 18-19 21.6152337239591 27.863378532287214 29.220700093607444 21.30068765014624 20-21 22.424864351844537 26.91679011525076 29.209574016574706 21.44877151632999 22-23 22.118531502078277 27.057089055664836 29.055482302306018 21.76889713995087 24-25 21.96917626800337 27.256379406988458 29.126869523954717 21.647574801053455 26-27 21.833774381419836 27.44122614093371 29.11722703847338 21.607772439173065 28-29 21.645246818512643 27.279483362650414 29.184888263918328 21.89038155491862 30-31 22.273575366817184 27.197278966643406 29.08732567163298 21.44181999490643 32-33 21.989148657862835 27.309586330698327 29.12522819675213 21.57603681468671 34-35 22.002149935857535 27.373666585884855 29.199064332703077 21.425119145554532 36-37 21.977921117056333 27.233392628520047 29.124045096160174 21.664641158263446 38-39 21.670720906217053 27.227437922635257 29.29780743321514 21.804033737932546 40-41 21.906140329893717 27.065493585296707 29.256360764557478 21.7720053202521 42-43 22.03191748196503 27.072351283559787 29.081469294856365 21.814261939618813 44-45 21.80490529749503 27.34729279996983 28.933736529994626 21.914065372540517 46-47 22.09189125410233 27.18338190949514 28.507817384080912 22.216909452321616 48-49 21.963815804002877 27.31545574185168 28.49995131835091 22.22077713579453 50-51 21.810460950524263 27.465211185283227 28.56679445648374 22.15753340770877 52-53 22.005063171615728 27.420079661113007 28.59419000423053 21.98066716304074 54-55 21.919023866025125 27.359015726861536 28.449170663127255 22.272789743986085 56-57 22.096754298301153 27.565995255307413 28.201730250882324 22.135520195509113 58-59 21.799712038897177 27.772677186034933 28.547231750876268 21.880379024191623 60-61 22.05780848180904 27.98464163848264 28.143306095909672 21.81424378379865 62-63 21.781022710772223 28.241757088072745 28.125542836545726 21.851677364609305 64-65 21.74354719096943 28.16688110481509 28.123877475018055 21.96569422919742 66-67 21.835848931430764 28.261163515418964 27.90960941599091 21.993378137159358 68-69 21.815778449643297 28.064472940328617 28.05481857800552 22.064930032022566 70-71 21.884662096992425 27.625841512608307 28.188267980934672 22.301228409464596 72-73 21.955441782988384 27.558268309940832 28.126373153862737 22.359916753208044 74-75 21.88326444527316 27.592265795642767 28.149956874456066 22.374512884628007 76-77 22.0741981631205 27.564321198028903 28.021373215790696 22.34010742305991 78-79 22.096517094224634 27.62134586059194 27.878323239297952 22.403813805885477 80-81 22.119753177704517 27.64241180483572 27.835918698755986 22.40191631870378 82-83 22.10851667421769 27.64869929386078 27.933442862679954 22.309341169241577 84-85 22.216066048949738 27.701604404876058 27.851349468555075 22.230980077619133 86-87 22.101954140938307 27.716412018138982 27.92311004258286 22.258523798339848 88-89 22.143522194526582 27.773284849005584 27.84173042750352 22.241462528964313 90-91 22.21255303526395 27.727097765466453 27.894814530654827 22.165534668614765 92-93 22.26465514161366 27.728453573536655 27.842005669705117 22.164885615144573 94-95 22.216888561567295 27.802168935328247 27.858028892826418 22.12291361027804 96-97 22.184220356078196 27.81716707983134 27.904209455938695 22.094403108151766 98-99 22.383181171545107 28.288982255262297 28.025705968730787 21.302130604461812 100-101 22.924349680267838 30.840518242937137 25.413147151491376 20.821984925303642 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2745.0 1 2641.5 2 3516.5 3 4707.0 4 5807.0 5 8689.0 6 11488.0 7 14376.5 8 17823.0 9 19277.5 10 18053.5 11 16410.0 12 16956.0 13 20355.0 14 28421.5 15 39146.0 16 48335.0 17 55000.5 18 56948.0 19 53448.0 20 47842.5 21 42592.0 22 40037.0 23 42971.0 24 51351.5 25 65147.5 26 84017.5 27 105566.0 28 129989.0 29 155833.5 30 179702.5 31 204594.0 32 230824.0 33 257443.0 34 284680.5 35 309771.5 36 337279.0 37 361780.5 38 379267.5 39 394428.5 40 411242.5 41 426828.5 42 435331.5 43 444136.5 44 455388.0 45 475410.0 46 486724.0 47 479898.5 48 473245.5 49 461717.5 50 445695.0 51 428565.5 52 409067.5 53 386373.5 54 360456.0 55 332819.0 56 303662.5 57 273334.0 58 242618.0 59 210791.0 60 176634.0 61 142972.5 62 111639.5 63 85920.0 64 66049.0 65 49579.5 66 36423.5 67 27544.0 68 21177.5 69 15362.5 70 10838.0 71 7701.5 72 5396.0 73 3618.5 74 2339.0 75 1484.5 76 940.0 77 558.5 78 353.0 79 222.5 80 133.0 81 85.5 82 64.0 83 46.0 84 34.0 85 23.5 86 15.0 87 10.5 88 7.0 89 5.0 90 3.5 91 2.0 92 1.0 93 1.0 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0025242864963475483 4 0.0 5 0.052147400534258884 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.001044696190992266 28-29 2.6809480923009534E-4 30-31 0.0 32-33 0.0 34-35 1.0969981286126092E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.7139124195612094E-6 46-47 9.039630166844454E-5 48-49 0.0 50-51 2.4204444681540424E-5 52-53 9.754500677840252E-6 54-55 0.0010507738335514343 56-57 0.0021563621734904154 58-59 0.008945031906854063 60-61 0.008073593773258397 62-63 0.004107954821220031 64-65 0.004979227461345229 66-67 0.00682502411637783 68-69 0.003822897650779712 70-71 0.005818395744936779 72-73 9.584876842096864E-4 74-75 0.0016056262875082004 76-77 0.001283223965337882 78-79 0.001103724008955175 80-81 5.022381966211199E-5 82-83 0.0 84-85 0.0 86-87 3.0576537342144296E-4 88-89 8.930649826768741E-4 90-91 0.0 92-93 0.0 94-95 1.3337501908929962E-4 96-97 3.38397857190936E-4 98-99 6.364249414425412E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 184.0 20-21 796.0 22-23 1630.0 24-25 1793.0 26-27 3436.0 28-29 7784.0 30-31 21497.0 32-33 28442.0 34-35 38356.0 36-37 59230.0 38-39 67942.0 40-41 70892.0 42-43 80781.0 44-45 96105.0 46-47 97014.0 48-49 87999.0 50-51 80998.0 52-53 67461.0 54-55 72111.0 56-57 73784.0 58-59 86177.0 60-61 87967.0 62-63 86932.0 64-65 98553.0 66-67 108368.0 68-69 107522.0 70-71 119246.0 72-73 89136.0 74-75 90709.0 76-77 95241.0 78-79 99424.0 80-81 101144.0 82-83 97065.0 84-85 95921.0 86-87 99733.0 88-89 103430.0 90-91 107156.0 92-93 106445.0 94-95 113562.0 96-97 177595.0 98-99 915700.0 100-101 7067752.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.79049024929628 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0213466408861 74.5914227769239 2 7.596966641523359 12.731071186015841 3 1.8483340187882584 4.646184407361606 4 0.7020694650632738 2.3530697866685157 5 0.320153782972864 1.341292121523154 6 0.17310410715297933 0.8702686801508911 7 0.10098901538825422 0.5923343376422884 8 0.059838152717371605 0.40110945214406624 9 0.03904757584430286 0.29446339707366437 >10 0.13360498942652982 1.7382713112493084 >50 0.003442007690734719 0.19389767398029412 >100 9.92006078925479E-4 0.14988497325108024 >500 5.580228493337402E-5 0.02693181955891411 >1k 5.579418206721333E-5 0.06979807645648292 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.816033450609747E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 5 0.0 1.816033450609747E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 6 2.7240501759146202E-5 1.816033450609747E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 7 2.7240501759146202E-5 1.816033450609747E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 8 2.7240501759146202E-5 1.816033450609747E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 9 2.7240501759146202E-5 3.632066901219494E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 10-11 2.7240501759146202E-5 3.632066901219494E-5 0.0 9.080167253048734E-6 9.080167253048734E-6 12-13 2.7240501759146202E-5 3.632066901219494E-5 0.0 1.816033450609747E-5 1.816033450609747E-5 14-15 2.7240501759146202E-5 3.632066901219494E-5 0.0 1.816033450609747E-5 1.816033450609747E-5 16-17 3.632066901219494E-5 3.632066901219494E-5 0.0 2.2700418132621835E-5 1.816033450609747E-5 18-19 3.632066901219494E-5 3.632066901219494E-5 0.0 3.632066901219494E-5 1.816033450609747E-5 20-21 3.632066901219494E-5 3.632066901219494E-5 0.0 4.540083626524367E-5 1.816033450609747E-5 22-23 3.632066901219494E-5 4.994091989176804E-5 0.0 4.540083626524367E-5 2.7240501759146205E-5 24-25 3.632066901219494E-5 5.902108714481677E-5 0.0 6.356117077134114E-5 3.632066901219494E-5 26-27 3.632066901219494E-5 6.356117077134114E-5 0.0 1.4528267604877975E-4 3.632066901219494E-5 28-29 3.632066901219494E-5 6.356117077134114E-5 0.0 5.765906205685946E-4 4.0860752638719304E-5 30-31 3.632066901219494E-5 6.356117077134114E-5 0.0 0.0021974004752377935 4.540083626524367E-5 32-33 3.632066901219494E-5 6.356117077134114E-5 0.0 0.005756826038432897 6.356117077134114E-5 34-35 4.540083626524367E-5 8.626158890396297E-5 0.0 0.010732757693103605 6.356117077134114E-5 36-37 4.540083626524367E-5 9.988183978353607E-5 0.0 0.0179424104920243 6.356117077134114E-5 38-39 6.356117077134114E-5 9.988183978353607E-5 0.0 0.03294284679406081 6.356117077134114E-5 40-41 6.356117077134114E-5 9.988183978353607E-5 0.0 0.08341949655375872 6.356117077134114E-5 42-43 7.264133802438988E-5 1.0442192341006043E-4 0.0 0.09798408482764889 6.356117077134114E-5 44-45 7.718142165091425E-5 1.2712234154268229E-4 0.0 0.11903191252021586 7.264133802438988E-5 46-47 8.172150527743861E-5 1.36202508795731E-4 0.0 0.14302625448639714 9.080167253048734E-5 48-49 8.172150527743861E-5 1.36202508795731E-4 0.0 0.16503657990778728 9.988183978353607E-5 50-51 8.172150527743861E-5 1.36202508795731E-4 0.0 0.18707868591456306 9.988183978353607E-5 52-53 8.172150527743861E-5 1.36202508795731E-4 0.0 0.22860683084638145 9.988183978353607E-5 54-55 8.172150527743861E-5 1.36202508795731E-4 0.0 0.32894267899256996 9.988183978353607E-5 56-57 8.172150527743861E-5 1.36202508795731E-4 0.0 0.44022920884593525 9.988183978353607E-5 58-59 8.172150527743861E-5 1.36202508795731E-4 0.0 0.5567640753715627 9.988183978353607E-5 60-61 8.172150527743861E-5 1.4074259242225536E-4 0.0 0.585520965061968 9.988183978353607E-5 62-63 8.172150527743861E-5 1.4528267604877975E-4 0.0 0.6024509369052774 9.988183978353607E-5 64-65 8.172150527743861E-5 1.5436284330182847E-4 0.0 0.6150042681326173 9.988183978353607E-5 66-67 8.172150527743861E-5 1.5436284330182847E-4 0.0 0.6226588491269374 9.988183978353607E-5 68-69 8.172150527743861E-5 1.5890292692835286E-4 0.0 0.630041025103666 9.988183978353607E-5 70-71 9.534175615701171E-5 1.6344301055487722E-4 0.0 0.6369828129686217 9.988183978353607E-5 72-73 1.1804217428963354E-4 1.6344301055487722E-4 0.0 0.6413367531664587 1.1804217428963354E-4 74-75 1.1804217428963354E-4 1.6798309418140158E-4 0.0 0.6450006006530637 1.1804217428963354E-4 76-77 1.2258225791615793E-4 1.816033450609747E-4 0.0 0.6486417477215363 1.1804217428963354E-4 78-79 1.2712234154268229E-4 1.9068351231402343E-4 0.0 0.6518152661764769 1.1804217428963354E-4 80-81 1.2712234154268229E-4 1.9068351231402343E-4 0.0 0.6531364305117955 1.3166242516920665E-4 82-83 1.2712234154268229E-4 1.9068351231402343E-4 0.0 0.6536903207142315 1.4528267604877975E-4 84-85 1.2712234154268229E-4 1.9068351231402343E-4 0.0 0.6542169704149083 1.4528267604877975E-4 86-87 1.2712234154268229E-4 1.9068351231402343E-4 0.0 0.6543894935927161 1.4528267604877975E-4 88-89 1.2712234154268229E-4 1.9976367956707215E-4 0.0 0.6544439745962345 1.498227596753041E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16225 0.0 53.96767 1 GTATCAA 30865 0.0 39.314045 1 TCAACGC 36605 0.0 32.31523 4 ATCAACG 36955 0.0 31.975784 3 TATCAAC 37800 0.0 31.544865 2 CAACGCA 37645 0.0 31.456678 5 AACGCAG 38890 0.0 30.452765 6 ACGCAGA 43685 0.0 27.110174 7 CGCAGAG 44595 0.0 26.61468 8 GTGGTAT 7330 0.0 24.594248 1 CTTATAC 16525 0.0 24.104311 1 TGGTATC 6845 0.0 23.82859 2 GCAGAGT 51385 0.0 23.097824 9 GTACATG 37350 0.0 21.639536 1 GAGTACT 30650 0.0 21.48207 12-13 TACATGG 37120 0.0 21.368904 2 TATACAC 21325 0.0 20.993433 3 ACATGGG 36800 0.0 20.854889 3 CAGAGTA 50805 0.0 20.195425 10-11 TTATACA 21780 0.0 19.35271 2 >>END_MODULE