##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139713_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10225189 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.14016904724206 32.0 28.0 33.0 18.0 33.0 2 30.742794485265748 33.0 31.0 33.0 25.0 34.0 3 31.621701271243005 33.0 32.0 33.0 27.0 34.0 4 30.93355095930256 33.0 31.0 33.0 27.0 34.0 5 31.82563471442924 33.0 32.0 33.0 30.0 34.0 6 35.26447745855847 37.0 35.0 38.0 29.0 38.0 7 35.86297974541106 38.0 36.0 38.0 31.0 38.0 8 36.003829953656606 38.0 37.0 38.0 31.0 38.0 9 36.30454283045526 38.0 37.0 38.0 33.0 38.0 10-11 36.43957260838895 38.0 37.5 38.0 33.5 38.0 12-13 36.48151907020985 38.0 38.0 38.0 34.0 38.0 14-15 36.49193002691686 38.0 38.0 38.0 34.0 38.0 16-17 36.48213460895442 38.0 38.0 38.0 34.0 38.0 18-19 36.49716235073993 38.0 38.0 38.0 34.0 38.0 20-21 36.4915222498077 38.0 38.0 38.0 34.0 38.0 22-23 36.47854178853357 38.0 38.0 38.0 34.0 38.0 24-25 36.46550222130573 38.0 38.0 38.0 34.0 38.0 26-27 36.405809090906914 38.0 38.0 38.0 34.0 38.0 28-29 36.38768446906698 38.0 38.0 38.0 33.5 38.0 30-31 36.39463297542041 38.0 38.0 38.0 34.0 38.0 32-33 36.37722154777188 38.0 38.0 38.0 33.5 38.0 34-35 36.33931892658002 38.0 37.5 38.0 33.0 38.0 36-37 36.317043607005445 38.0 37.0 38.0 33.0 38.0 38-39 36.30346547804291 38.0 37.0 38.0 33.0 38.0 40-41 36.29613865307418 38.0 37.0 38.0 33.0 38.0 42-43 36.24002195828392 38.0 37.0 38.0 33.0 38.0 44-45 36.18564876302018 38.0 37.0 38.0 33.0 38.0 46-47 36.142680485446036 38.0 37.0 38.0 33.0 38.0 48-49 36.090927098283466 38.0 37.0 38.0 33.0 38.0 50-51 36.05970289995033 38.0 37.0 38.0 32.5 38.0 52-53 36.03416874867575 38.0 37.0 38.0 32.0 38.0 54-55 35.984950794214384 38.0 37.0 38.0 31.0 38.0 56-57 35.9808564116679 38.0 37.0 38.0 31.0 38.0 58-59 35.95188046970451 38.0 37.0 38.0 31.0 38.0 60-61 35.93415988867673 38.0 37.0 38.0 31.0 38.0 62-63 35.925874924011254 38.0 37.0 38.0 31.0 38.0 64-65 35.91001158216619 38.0 37.0 38.0 31.0 38.0 66-67 35.91146355302212 38.0 37.0 38.0 31.0 38.0 68-69 35.89291414655694 38.0 37.0 38.0 31.0 38.0 70-71 35.863053705736924 38.0 37.0 38.0 31.0 38.0 72-73 35.832097906809636 38.0 37.0 38.0 31.0 38.0 74-75 35.84647969643055 38.0 37.0 38.0 31.0 38.0 76-77 35.82375319158344 38.0 37.0 38.0 31.0 38.0 78-79 35.80481815194179 38.0 37.0 38.0 31.0 38.0 80-81 35.7580335867529 38.0 37.0 38.0 31.0 38.0 82-83 35.755344420456524 38.0 37.0 38.0 31.0 38.0 84-85 35.75013034277788 38.0 37.0 38.0 31.0 38.0 86-87 35.74129587245828 38.0 37.0 38.0 31.0 38.0 88-89 35.71023715491245 38.0 36.5 38.0 30.5 38.0 90-91 35.69129070457375 38.0 36.0 38.0 30.5 38.0 92-93 35.63828543432038 38.0 36.0 38.0 29.0 38.0 94-95 35.63284943584863 38.0 36.0 38.0 29.0 38.0 96-97 35.66115101355594 38.0 36.0 38.0 30.5 38.0 98-99 35.69035079591106 38.0 36.0 38.0 31.0 38.0 100-101 35.15134179229291 38.0 35.0 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 28.0 20 115.0 21 804.0 22 3528.0 23 10520.0 24 23280.0 25 42480.0 26 67687.0 27 99454.0 28 137900.0 29 181047.0 30 230442.0 31 287775.0 32 359593.0 33 458376.0 34 614641.0 35 914418.0 36 1775677.0 37 5017419.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.28953831562429 18.329177093939293 14.38220848533949 22.999076105096933 2 14.48384963837832 20.481733882865147 42.90010678531223 22.134309693444298 3 18.315193531265766 26.693269601563312 30.119794381129196 24.87174248604172 4 12.306188179015566 19.29681690969233 38.26276462958288 30.13423028170922 5 14.292784381534911 37.21618205991561 34.747118132215434 13.743915426334047 6 29.46452138928679 38.13364232191698 18.799007040358862 13.602829248437365 7 26.339366441050625 33.295883332816636 22.76449853396353 17.60025169216921 8 24.15934805703836 37.06948595277799 20.849052276686525 17.92211371349713 9 25.50107386768108 17.497172912891877 21.211959994089106 35.78979322533794 10-11 24.104459096061696 27.104398754878762 28.543125217538766 20.248016931520777 12-13 25.068783569672892 24.604332496934774 28.786587710016903 21.540296223375428 14-15 22.239189037933137 25.874408085484195 26.664608676896272 25.221794199686393 16-17 21.543088347804623 29.096063652221975 27.3290351894718 22.031812810501595 18-19 21.557371702371466 27.992612165897373 29.329110689298748 21.12090544243241 20-21 22.468781595669707 27.064133060300456 29.294272666583083 21.17281267744676 22-23 22.205167599568547 26.958849422320707 29.156450520597982 21.679532457512764 24-25 21.901411964032775 27.141946698700142 29.25983894571265 21.69680239155443 26-27 21.765432243112386 27.292719924180382 29.254062895785644 21.68778493692159 28-29 21.69115953908932 27.253626408950094 29.31648365835924 21.73873039360135 30-31 21.97207175809006 27.097667816021794 29.235304716935005 21.69495570895314 32-33 21.758446771688842 27.287692184287206 29.16086461906381 21.792996424960144 34-35 21.917688864061706 27.342985119458856 29.133028177545363 21.606297838934076 36-37 21.931735488546682 27.194541725177185 29.10826878129021 21.765454004985923 38-39 21.751907298228762 27.338005889285256 29.209509971070457 21.70057684141553 40-41 21.99533285298487 27.218007367232065 29.079015989003654 21.70764379077941 42-43 21.954401571330802 27.250315038216787 28.911574794486572 21.88370859596584 44-45 21.943561630828174 27.42367844086639 28.761240825648056 21.871519102657384 46-47 22.076372797558154 27.368109153396396 28.432460309738026 22.123057739307416 48-49 21.967087344290658 27.48916016558876 28.445340652626918 22.09841183749367 50-51 21.9303005132176 27.667840914307888 28.35126178615631 22.050596786318195 52-53 22.14533352725174 27.58104857918241 28.226405752036587 22.04721214152926 54-55 22.083620781220535 27.501092249180203 28.252822585157954 22.162464384441304 56-57 22.04498052324026 27.615576344334684 28.242945119672587 22.096498012752466 58-59 21.994467156702573 27.618334581149657 28.331144294735072 22.056053967412698 60-61 22.07263069446693 27.609220496635057 28.297911845237145 22.02023696366087 62-63 21.990804035149917 27.714255271547472 28.26309190541994 22.03184878788267 64-65 21.964374366452013 27.675640136940338 28.227765907158286 22.132219589449363 66-67 22.05580181152762 27.75571782189473 28.046332155097677 22.142148211479974 68-69 21.97485760997521 27.734679337244245 28.15711964121493 22.133343411565612 70-71 21.999644244753956 27.444758251867363 28.245484693899193 22.31011280947949 72-73 22.04156688876085 27.49237456081873 28.138760063526625 22.327298486893792 74-75 21.89226458431096 27.58591391779731 28.154733560837364 22.36708793705436 76-77 22.10187453981576 27.490136903337724 28.052901013661003 22.355087543185515 78-79 22.08805521405183 27.556025281213543 27.927907108164096 22.428012396570534 80-81 22.117287702123633 27.60611267802549 27.873284656745888 22.403314963104993 82-83 22.147603223915635 27.565556532077295 27.98443749583937 22.302402748167697 84-85 22.213724947026602 27.556438835069102 27.935204016865768 22.29463220103853 86-87 22.069237955909852 27.629919803628173 27.97086697961116 22.32997526085082 88-89 22.143290150985667 27.608928936996648 27.98496119198446 22.262819720033228 90-91 22.13921511086265 27.597873447693367 27.97729914141741 22.28561230002657 92-93 22.125369676040428 27.555015226320467 28.01398216324429 22.305632934394815 94-95 22.03577283663663 27.6536849878451 28.004091259204028 22.306450916314233 96-97 22.063135395292576 27.667476784578408 28.022098707280602 22.247289112848414 98-99 22.261818641276243 28.2785342261955 28.071067559024865 21.388579573503392 100-101 22.919986435178508 30.78962970907385 25.401366905007734 20.88901695073991 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2937.0 1 2667.0 2 3168.0 3 4108.5 4 4842.5 5 6959.0 6 9165.5 7 11928.0 8 15510.0 9 17186.5 10 16150.5 11 14564.0 12 15041.5 13 18096.0 14 25122.0 15 34390.0 16 42491.5 17 48559.0 18 50694.0 19 48290.0 20 43700.0 21 39243.5 22 37380.5 23 40270.0 24 48047.5 25 61016.5 26 78545.0 27 98219.5 28 119923.0 29 142716.5 30 164782.0 31 187703.0 32 213487.0 33 240721.5 34 266391.0 35 289896.5 36 316598.5 37 340294.0 38 356153.5 39 370360.5 40 386917.0 41 401240.0 42 408329.5 43 415472.5 44 425414.5 45 431385.0 46 431018.5 47 427206.0 48 422774.5 49 417130.0 50 408361.0 51 395200.5 52 376772.0 53 355812.5 54 333529.5 55 310261.0 56 284049.5 57 255923.5 58 229431.0 59 200231.5 60 167628.5 61 135809.0 62 106900.0 63 82663.0 64 62595.5 65 46525.0 66 34326.0 67 26389.0 68 20278.0 69 14964.0 70 10879.5 71 7601.0 72 5168.5 73 3420.0 74 2265.0 75 1432.5 76 885.5 77 536.5 78 337.5 79 217.0 80 143.0 81 97.5 82 67.5 83 43.0 84 24.0 85 16.5 86 14.5 87 10.0 88 6.5 89 4.0 90 2.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.00246450212313924 4 0.0 5 0.04969101304631142 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 4.8898851649588095E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.490571093158712E-4 28-29 2.349172481969734E-4 30-31 0.0 32-33 0.0 34-35 4.92255322399916E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.0144690679758186E-5 46-47 9.724953739930579E-5 48-49 0.0 50-51 2.0820604569976957E-5 52-53 1.5728779634921393E-5 54-55 0.0011719501027990286 56-57 0.0021540505697676504 58-59 0.008773608684940034 60-61 0.0081883836292862 62-63 0.004261801716459716 64-65 0.005253302024532481 66-67 0.006775939315973917 68-69 0.0038631731264240207 70-71 0.005706463585183871 72-73 9.594349202444023E-4 74-75 0.00159088510449089 76-77 0.0013036746572805194 78-79 0.0011525434133996225 80-81 7.727568725578282E-5 82-83 0.0 84-85 0.0 86-87 2.1475975041480844E-4 88-89 0.0010549170583873634 90-91 0.0 92-93 6.357146526124566E-6 94-95 1.480379183036657E-4 96-97 3.7870072222145326E-4 98-99 2.0248548229713298E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 160.0 20-21 693.0 22-23 1378.0 24-25 1656.0 26-27 3414.0 28-29 7236.0 30-31 19488.0 32-33 26052.0 34-35 34961.0 36-37 54030.0 38-39 60853.0 40-41 63524.0 42-43 73152.0 44-45 87398.0 46-47 87626.0 48-49 79399.0 50-51 71751.0 52-53 64011.0 54-55 69507.0 56-57 70807.0 58-59 76954.0 60-61 78318.0 62-63 74333.0 64-65 80317.0 66-67 86044.0 68-69 87980.0 70-71 88716.0 72-73 80966.0 74-75 81918.0 76-77 87090.0 78-79 90971.0 80-81 90706.0 82-83 86296.0 84-85 86646.0 86-87 90032.0 88-89 94532.0 90-91 97418.0 92-93 95943.0 94-95 103430.0 96-97 163365.0 98-99 856799.0 100-101 6669319.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.0986608901537 #Duplication Level Percentage of deduplicated Percentage of total 1 90.63804556537701 78.03814348879695 2 6.606788246684772 11.376712416487306 3 1.5301706649541575 3.9523693555784702 4 0.5526569197670145 1.9033208289446828 5 0.2587457686495752 1.1138832095860969 6 0.13594593650759468 0.7022857852057056 7 0.07840651103383384 0.4725486923557508 8 0.04964763594958493 0.3419675977296893 9 0.033424281399251014 0.25900072827220666 >10 0.11296203092339167 1.5192986026777675 >50 0.002593614854601672 0.1510677135368911 >100 5.039063732346158E-4 0.07229720950134717 >500 5.4460432903703055E-5 0.028790263145538612 >1k 5.4457093088193225E-5 0.06831410818159055 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.779770329917619E-6 9.779770329917619E-6 2 0.0 0.0 0.0 9.779770329917619E-6 9.779770329917619E-6 3 0.0 1.9559540659835238E-5 0.0 9.779770329917619E-6 9.779770329917619E-6 4 0.0 4.889885164958809E-5 0.0 9.779770329917619E-6 9.779770329917619E-6 5 0.0 4.889885164958809E-5 0.0 9.779770329917619E-6 9.779770329917619E-6 6 2.9339310989752855E-5 4.889885164958809E-5 0.0 9.779770329917619E-6 9.779770329917619E-6 7 2.9339310989752855E-5 4.889885164958809E-5 0.0 1.9559540659835238E-5 9.779770329917619E-6 8 2.9339310989752855E-5 8.801793296925857E-5 0.0 1.9559540659835238E-5 3.9119081319670476E-5 9 2.9339310989752855E-5 1.2713701428892905E-4 0.0 4.889885164958809E-5 3.9119081319670476E-5 10-11 2.9339310989752855E-5 1.2713701428892905E-4 0.0 4.889885164958809E-5 3.9119081319670476E-5 12-13 2.9339310989752855E-5 1.2713701428892905E-4 0.0 6.356850714446451E-5 4.400896648462928E-5 14-15 2.9339310989752855E-5 1.7114598077355833E-4 0.0 8.312804780429975E-5 6.845839230942332E-5 16-17 3.9119081319670476E-5 1.8581563626843476E-4 0.0 9.779770329917618E-5 9.779770329917618E-5 18-19 3.9119081319670476E-5 2.0048529176331119E-4 0.0 1.0757747362909379E-4 1.1246735879405261E-4 20-21 3.9119081319670476E-5 2.1515494725818759E-4 0.0 1.2224712912397022E-4 1.1735724395901142E-4 22-23 3.9119081319670476E-5 2.4449425824794044E-4 0.0 1.3202689945388785E-4 1.3691678461884668E-4 24-25 3.9119081319670476E-5 2.8361333956761095E-4 0.0 1.8581563626843473E-4 1.7114598077355833E-4 26-27 3.9119081319670476E-5 2.9339310989752855E-4 0.0 2.738335692376933E-4 1.7603586593851713E-4 28-29 3.9119081319670476E-5 2.9339310989752855E-4 0.0 7.188131192489449E-4 1.8092575110347593E-4 30-31 3.9119081319670476E-5 3.4229196154711666E-4 0.0 0.0024449425824794044 1.9070552143339356E-4 32-33 3.9119081319670476E-5 3.5207173187703426E-4 0.0 0.005936320590259994 1.9559540659835236E-4 34-35 3.9119081319670476E-5 3.6674138737191066E-4 0.0 0.010576821611805905 1.9559540659835236E-4 36-37 3.9119081319670476E-5 3.911908131967047E-4 0.0 0.018239271665296358 1.9559540659835236E-4 38-39 3.9119081319670476E-5 4.1075035385653997E-4 0.0 0.03183315242388185 1.9559540659835236E-4 40-41 4.889885164958809E-5 4.3030989451637517E-4 0.0 0.067191912051699 1.9559540659835236E-4 42-43 4.889885164958809E-5 4.596492055061281E-4 0.0 0.07933349691629171 1.9559540659835236E-4 44-45 4.889885164958809E-5 5.232177126505926E-4 0.0 0.09657523200793648 1.9559540659835236E-4 46-47 4.889885164958809E-5 5.770064494651395E-4 0.0 0.11656997244745305 2.0537517692826999E-4 48-49 4.889885164958809E-5 5.818963346300983E-4 0.0 0.13480924411274942 2.0537517692826999E-4 50-51 4.889885164958809E-5 6.063457604548923E-4 0.0 0.1522710240368173 2.1515494725818759E-4 52-53 4.889885164958809E-5 6.063457604548923E-4 0.0 0.17999667292213378 2.200448324231464E-4 54-55 4.889885164958809E-5 6.307951862796863E-4 0.0 0.24253341429679198 2.2982460275306404E-4 56-57 4.889885164958809E-5 6.65024382434398E-4 0.0 0.30990136221442943 2.3471448791802284E-4 58-59 4.889885164958809E-5 6.943636934241509E-4 0.0 0.3848779714487429 2.3471448791802284E-4 60-61 4.889885164958809E-5 7.090333489190273E-4 0.0 0.4101977968328996 2.3471448791802284E-4 62-63 5.867862197950571E-5 7.237030044139037E-4 0.0 0.42240784008980176 2.542740285778581E-4 64-65 5.867862197950571E-5 8.019411670532446E-4 0.0 0.4343196003516414 2.542740285778581E-4 66-67 5.867862197950571E-5 8.019411670532446E-4 0.0 0.4412436777452231 2.542740285778581E-4 68-69 5.867862197950571E-5 8.263905928780387E-4 0.0 0.44742938247889597 2.640537989077757E-4 70-71 6.356850714446451E-5 8.312804780429975E-4 0.0 0.4531994469735474 2.738335692376933E-4 72-73 6.845839230942332E-5 8.312804780429975E-4 0.0 0.4578399479950933 3.32512191217199E-4 74-75 6.845839230942332E-5 8.459501335378739E-4 0.0 0.46163938876826627 3.32512191217199E-4 76-77 6.845839230942332E-5 8.606197890327503E-4 0.0 0.46497918033593316 3.32512191217199E-4 78-79 6.845839230942332E-5 8.70399559362668E-4 0.0 0.46798156982721784 3.32512191217199E-4 80-81 6.845839230942332E-5 8.70399559362668E-4 0.0 0.4691795916926328 3.4229196154711666E-4 82-83 6.845839230942332E-5 8.70399559362668E-4 0.0 0.46961968135747906 3.6185150220695186E-4 84-85 6.845839230942332E-5 8.801793296925857E-4 0.0 0.47019668780694424 3.6185150220695186E-4 86-87 6.845839230942332E-5 8.997388703524209E-4 0.0 0.47042651240969724 3.765211577018283E-4 88-89 6.845839230942332E-5 9.388579516720914E-4 0.0 0.4704851910316768 3.814110428667871E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15715 0.0 53.883255 1 GTATCAA 29085 0.0 38.96157 1 TCAACGC 35320 0.0 31.509354 4 ATCAACG 35530 0.0 31.348589 3 CAACGCA 36065 0.0 30.870401 5 TATCAAC 36730 0.0 30.488575 2 AACGCAG 37370 0.0 29.788305 6 TGGTATC 6510 0.0 27.192272 2 GTGGTAT 7190 0.0 26.477568 1 ACGCAGA 42580 0.0 26.113144 7 CGCAGAG 43315 0.0 25.729662 8 GCAGAGT 49935 0.0 22.327242 9 GAGTACT 28965 0.0 20.88061 12-13 GTACATG 35770 0.0 20.843124 1 TACATGG 35805 0.0 20.329548 2 CAGAGTA 48985 0.0 19.992111 10-11 ACATGGG 35460 0.0 19.871435 3 AGAGTAC 45540 0.0 18.999554 10-11 GTACTTT 32025 0.0 18.731203 14-15 CATGGGG 23445 0.0 17.690647 4 >>END_MODULE