##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139712_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9164945 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.97513482077634 32.0 27.0 33.0 18.0 33.0 2 30.678915258083926 33.0 31.0 33.0 25.0 33.0 3 31.593750971773424 33.0 32.0 33.0 27.0 34.0 4 30.887587541441874 33.0 31.0 33.0 27.0 34.0 5 31.811958391457885 33.0 32.0 33.0 30.0 34.0 6 35.248193742570194 37.0 35.0 38.0 29.0 38.0 7 35.86847962535509 38.0 36.0 38.0 31.0 38.0 8 36.0204403845304 38.0 37.0 38.0 31.0 38.0 9 36.31499938079279 38.0 37.0 38.0 33.0 38.0 10-11 36.44886592336343 38.0 37.5 38.0 33.5 38.0 12-13 36.48842180722306 38.0 38.0 38.0 34.0 38.0 14-15 36.49621334334249 38.0 38.0 38.0 34.0 38.0 16-17 36.49168216503209 38.0 38.0 38.0 34.0 38.0 18-19 36.511803889712375 38.0 38.0 38.0 34.0 38.0 20-21 36.5073396878405 38.0 38.0 38.0 34.0 38.0 22-23 36.49469817510578 38.0 38.0 38.0 34.0 38.0 24-25 36.47840735768065 38.0 38.0 38.0 34.0 38.0 26-27 36.42380326675571 38.0 38.0 38.0 34.0 38.0 28-29 36.407863801978884 38.0 38.0 38.0 34.0 38.0 30-31 36.406676235618846 38.0 38.0 38.0 34.0 38.0 32-33 36.38388463782262 38.0 38.0 38.0 33.5 38.0 34-35 36.332567294061356 38.0 38.0 38.0 33.0 38.0 36-37 36.30514129072962 38.0 37.0 38.0 33.0 38.0 38-39 36.26069814535602 38.0 37.0 38.0 33.0 38.0 40-41 36.29949059657237 38.0 37.0 38.0 33.0 38.0 42-43 36.25540808279453 38.0 37.0 38.0 33.0 38.0 44-45 36.20238387198691 38.0 37.0 38.0 33.0 38.0 46-47 36.160773628361184 38.0 37.0 38.0 33.0 38.0 48-49 36.111306810844795 38.0 37.0 38.0 33.0 38.0 50-51 36.084649235845205 38.0 37.0 38.0 33.0 38.0 52-53 36.07745607522938 38.0 37.0 38.0 32.5 38.0 54-55 36.03320980130684 38.0 37.0 38.0 31.5 38.0 56-57 36.03029547361046 38.0 37.0 38.0 31.5 38.0 58-59 36.00127862872566 38.0 37.0 38.0 31.0 38.0 60-61 35.98736057693749 38.0 37.0 38.0 31.0 38.0 62-63 35.98443631653369 38.0 37.0 38.0 31.0 38.0 64-65 35.97382001709502 38.0 37.0 38.0 31.0 38.0 66-67 35.97407114583616 38.0 37.0 38.0 31.0 38.0 68-69 35.95246681548993 38.0 37.0 38.0 31.0 38.0 70-71 35.92231345792506 38.0 37.0 38.0 31.0 38.0 72-73 35.89003199457121 38.0 37.0 38.0 31.0 38.0 74-75 35.90905150294678 38.0 37.0 38.0 31.0 38.0 76-77 35.89118008740297 38.0 37.0 38.0 31.0 38.0 78-79 35.8767800341852 38.0 37.0 38.0 31.0 38.0 80-81 35.836598267678504 38.0 37.0 38.0 31.0 38.0 82-83 35.8386311981349 38.0 37.0 38.0 31.0 38.0 84-85 35.83284607794639 38.0 37.0 38.0 31.0 38.0 86-87 35.82612912420137 38.0 37.0 38.0 31.0 38.0 88-89 35.80000489930575 38.0 37.0 38.0 31.0 38.0 90-91 35.78070207511581 38.0 37.0 38.0 31.0 38.0 92-93 35.72949056631013 38.0 36.5 38.0 31.0 38.0 94-95 35.72279440422693 38.0 36.0 38.0 31.0 38.0 96-97 35.7550465269498 38.0 36.0 38.0 31.0 38.0 98-99 35.790205832692095 38.0 36.0 38.0 31.0 38.0 100-101 35.25780869480242 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 17.0 19 41.0 20 149.0 21 766.0 22 3213.0 23 9031.0 24 20308.0 25 37112.0 26 59911.0 27 88093.0 28 121411.0 29 160894.0 30 203755.0 31 254525.0 32 317487.0 33 405888.0 34 546424.0 35 815701.0 36 1598400.0 37 4521817.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.22556818398801 18.638093300068903 14.437533449464235 22.69880506647885 2 14.266141258894624 20.50531672585051 43.421635372607255 21.80690664264761 3 17.853748244220153 27.304947630214134 30.646780576538475 24.194523549027245 4 12.040945144788102 19.66916331740125 38.39087959611323 29.899011941697413 5 13.813065058051327 37.59105282313695 35.050066907982256 13.545815210829465 6 28.740379784057623 38.63950083715723 18.883888555796023 13.736230822989118 7 25.799532894087196 33.65404811485503 22.848385887749462 17.698033103308312 8 24.04833853340091 36.975573775947375 21.088582637429905 17.887505053221815 9 25.303217858917865 17.41661297476417 21.257683488553393 36.02248567776457 10-11 23.83265802467991 27.24133641827638 28.71719361109096 20.20881194595276 12-13 25.00813152724866 24.705822020754077 28.885263359463696 21.400783092533562 14-15 22.200100491601425 25.968300955433993 26.71931473674965 25.112283816214937 16-17 21.326767372853848 29.42162227923899 27.288292510211466 21.963317837695698 18-19 21.357536788273144 27.98155362634473 29.55766783106718 21.103241754314947 20-21 22.287177332909213 27.01353885407572 29.47514273289392 21.224141080121147 22-23 22.009294869065453 27.155863521241752 29.371779696231066 21.46306191346173 24-25 21.752292585593384 27.423305959125376 29.544356138414546 21.28004531686669 26-27 21.686580679268147 27.461508682761494 29.559839296794287 21.29207134117607 28-29 21.47372243957144 27.240802039382615 29.767476666329216 21.517998854716726 30-31 21.97264917758295 27.30901717277543 29.397133562691963 21.321200086949656 32-33 21.7657879544118 27.30546526892296 29.406487171603697 21.522259605061546 34-35 21.555347644274416 27.542928309288605 29.68213795234007 21.219586094096908 36-37 21.817198250606985 27.31902070088525 29.418371944418087 21.44540910408968 38-39 21.456567654227168 27.35008423276885 29.579507368676722 21.613840744327263 40-41 21.7206008058223 27.221510764329267 29.51647634825444 21.54141208159399 42-43 21.870309168127378 27.256706493465416 29.269435367654474 21.603548970752733 44-45 21.663855310249456 27.621199247769585 29.044023510648344 21.670921931332618 46-47 22.078661498933545 27.31250549116744 28.532658729139754 22.07617428075926 48-49 21.883901397498146 27.47049224435601 28.53162532333234 22.11398103481351 50-51 21.64589247727236 27.640272866678533 28.667372120295763 22.046462535753346 52-53 21.98578890505741 27.656742776949034 28.491581667127026 21.865886650866535 54-55 21.936338288655293 27.600355641851102 28.255117649957157 22.20818841953645 56-57 22.130592151104263 27.908403031445804 27.938865846967452 22.02213897048248 58-59 21.76198248793865 28.1849498279424 28.30984868529653 21.74321899882242 60-61 22.03357365353698 28.487148853713514 27.808382195321858 21.670895297427652 62-63 21.792045972833535 28.766373340569835 27.73998269355725 21.701597993039385 64-65 21.738218900462503 28.674366196900277 27.79795309498123 21.78946180765599 66-67 21.87857052529643 28.648916241770124 27.619697602383635 21.85281563054981 68-69 21.816608479716155 28.406705423704746 27.888056208947525 21.888629887631573 70-71 21.957937594963372 27.86773838472004 28.037442631298106 22.13688138901848 72-73 22.080060333833586 27.793414633261992 27.967883045184124 22.158641987720298 74-75 21.837436410195306 28.00781949050366 27.979374202328117 22.17536989697291 76-77 22.041806473428885 27.91927692386803 27.915056808009364 22.123859794693722 78-79 22.00826680114109 27.99667797897138 27.816862224268952 22.178192995618577 80-81 22.037292943721052 27.98742140530534 27.7831087737833 22.192176877190313 82-83 22.114770594639108 27.868325775425713 27.921096043770056 22.09580758616513 84-85 22.20890540099538 27.86277706471228 27.812754404031136 22.115563130261208 86-87 21.974737730702156 27.957215560622462 27.908875589455327 22.15917111922006 88-89 22.072246836429642 27.974655352983902 27.804980422178883 22.148117388407574 90-91 22.177246573498692 27.939981659624834 27.867931752397773 22.014840014478704 92-93 22.159386451083783 27.96977015777952 27.746435233872507 22.124408157264188 94-95 21.97794167403754 28.042099947344273 27.795186571084745 22.18477180753344 96-97 22.087639682422807 28.024307481747513 27.83260167892544 22.055451156904237 98-99 22.24732201815488 28.648106068632302 27.88126695486708 21.223304958345743 100-101 22.821390876350645 31.126896320325066 25.31915952273911 20.732553280585176 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3597.0 1 3039.0 2 2771.5 3 3532.5 4 4903.0 5 7529.0 6 9768.5 7 10267.5 8 9743.5 9 9130.5 10 8740.5 11 9239.5 12 11197.0 13 17330.5 14 27780.0 15 40453.5 16 52272.0 17 59503.5 18 62753.5 19 58922.5 20 52312.5 21 47357.0 22 44696.0 23 47495.5 24 55396.0 25 69622.5 26 88896.5 27 108693.5 28 128409.0 29 148977.0 30 167480.0 31 186327.0 32 208490.5 33 231718.0 34 253649.5 35 273165.5 36 296318.5 37 317691.5 38 329443.0 39 336450.0 40 346403.5 41 356042.0 42 360141.0 43 368909.0 44 393456.0 45 405802.0 46 390045.0 47 375673.5 48 368675.5 49 360333.5 50 350690.5 51 339979.0 52 324723.0 53 306181.0 54 288663.0 55 270065.5 56 249006.5 57 225710.5 58 203201.5 59 180049.5 60 152915.5 61 125459.5 62 98818.5 63 75652.5 64 57434.0 65 42742.0 66 31221.0 67 23628.5 68 18156.5 69 13292.5 70 9626.0 71 6970.0 72 4977.5 73 3432.0 74 2316.5 75 1576.0 76 1065.5 77 688.0 78 451.5 79 290.5 80 188.5 81 123.5 82 84.5 83 61.5 84 45.5 85 30.5 86 18.5 87 12.5 88 9.5 89 5.5 90 3.5 91 2.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.002334984006996223 4 0.0 5 0.05022397843085801 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0011580267944458194 28-29 2.8970903756088607E-4 30-31 0.0 32-33 0.0 34-35 1.0459164476802042E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.709666098791574E-5 46-47 9.211910678089897E-5 48-49 0.0 50-51 3.520616849625301E-5 52-53 1.1875036144641265E-5 54-55 0.0010057778946661983 56-57 0.002102089422521605 58-59 0.008963229357637058 60-61 0.007794160290046192 62-63 0.004220147506275061 64-65 0.005076341843746182 66-67 0.0065985028631474945 68-69 0.0035845602582887655 70-71 0.005631965080514312 72-73 0.001021814756191703 74-75 0.0015983985112516265 76-77 0.0013595722704870378 78-79 0.0010889968372128733 80-81 6.887092658600275E-5 82-83 0.0 84-85 0.0 86-87 2.210229784757129E-4 88-89 9.453960188146797E-4 90-91 0.0 92-93 0.0 94-95 1.5020866612376247E-4 96-97 2.1342097821505364E-4 98-99 2.363115733435504E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1122.0 20-21 3803.0 22-23 2502.0 24-25 3029.0 26-27 5155.0 28-29 10198.0 30-31 21172.0 32-33 26872.0 34-35 36107.0 36-37 54822.0 38-39 65180.0 40-41 64729.0 42-43 74979.0 44-45 88211.0 46-47 87848.0 48-49 79990.0 50-51 101441.0 52-53 68258.0 54-55 72917.0 56-57 76876.0 58-59 78348.0 60-61 77741.0 62-63 75139.0 64-65 86289.0 66-67 95859.0 68-69 95096.0 70-71 107341.0 72-73 77325.0 74-75 77696.0 76-77 81444.0 78-79 85532.0 80-81 86989.0 82-83 81175.0 84-85 80475.0 86-87 83311.0 88-89 88002.0 90-91 93166.0 92-93 88337.0 94-95 93443.0 96-97 140288.0 98-99 726985.0 100-101 5719753.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.29159721980443 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3047839460359 75.27642878180914 2 7.373839840905861 12.431054756659671 3 1.8435878943243402 4.66196904683084 4 0.6971319288980576 2.350494550389617 5 0.3098451914955195 1.3058673041016753 6 0.16291138938064872 0.8239236729715419 7 0.08572153085074354 0.505792332607514 8 0.05845286301581969 0.39416681485391003 9 0.038936580180317044 0.2953823880308314 >10 0.12117725709720673 1.5789274850391797 >50 0.0026153786093357197 0.15191427541269892 >100 9.311828369121625E-4 0.13889595998407245 >500 2.1672143163433272E-5 0.013244151827559905 >1k 4.334422626399021E-5 0.0719384794817093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0911140219608519E-5 0.0 0.0 0.0 3 0.0 1.0911140219608519E-5 0.0 0.0 0.0 4 0.0 7.637798153725964E-5 0.0 0.0 0.0 5 0.0 7.637798153725964E-5 0.0 0.0 0.0 6 1.0911140219608519E-5 7.637798153725964E-5 0.0 0.0 0.0 7 1.0911140219608519E-5 7.637798153725964E-5 0.0 0.0 0.0 8 1.0911140219608519E-5 7.637798153725964E-5 0.0 1.0911140219608519E-5 1.0911140219608519E-5 9 1.0911140219608519E-5 1.745782435137363E-4 0.0 3.2733420658825556E-5 1.0911140219608519E-5 10-11 1.0911140219608519E-5 1.745782435137363E-4 0.0 6.001127120784685E-5 1.0911140219608519E-5 12-13 1.0911140219608519E-5 1.745782435137363E-4 0.0 8.728912175686815E-5 1.0911140219608519E-5 14-15 2.1822280439217037E-5 3.0551192614903855E-4 0.0 8.728912175686815E-5 1.6366710329412778E-5 16-17 3.2733420658825556E-5 3.0551192614903855E-4 0.0 1.0365583208628092E-4 2.1822280439217037E-5 18-19 3.2733420658825556E-5 3.218786364784513E-4 0.0 1.2002254241569371E-4 2.1822280439217037E-5 20-21 3.2733420658825556E-5 3.491564870274726E-4 0.0 1.2547811252549797E-4 2.7277850549021296E-5 22-23 3.2733420658825556E-5 3.818899076862982E-4 0.0 1.3093368263530222E-4 3.818899076862981E-5 24-25 3.2733420658825556E-5 3.928010479059067E-4 0.0 1.3093368263530222E-4 4.3644560878434074E-5 26-27 3.2733420658825556E-5 4.037121881255152E-4 0.0 1.8548938373334485E-4 4.3644560878434074E-5 28-29 5.455570109804259E-5 4.0916775823531947E-4 0.0 4.41901178894145E-4 4.3644560878434074E-5 30-31 5.455570109804259E-5 4.3644560878434074E-4 0.0 0.001200225424156937 4.3644560878434074E-5 32-33 6.001127120784685E-5 4.3644560878434074E-4 0.0 0.0030114747006119514 5.455570109804259E-5 34-35 7.092241142745537E-5 4.800901696627749E-4 0.0 0.005488303530463085 5.455570109804259E-5 36-37 7.637798153725964E-5 5.128235903216004E-4 0.0 0.008968957260518204 5.455570109804259E-5 38-39 7.637798153725964E-5 5.346458707608174E-4 0.0 0.013982626191428317 5.455570109804259E-5 40-41 7.637798153725964E-5 5.8920157185886E-4 0.0 0.019629141255075727 5.455570109804259E-5 42-43 7.637798153725964E-5 6.001127120784685E-4 0.0 0.025155633776307442 5.455570109804259E-5 44-45 8.728912175686815E-5 6.601239832863154E-4 0.0 0.03132588357049606 5.455570109804259E-5 46-47 1.0365583208628092E-4 7.092241142745537E-4 0.0 0.03799259024467687 5.455570109804259E-5 48-49 1.1456697230588945E-4 7.092241142745537E-4 0.0 0.044424707404136086 5.455570109804259E-5 50-51 1.2002254241569371E-4 8.456133670196603E-4 0.0 0.051680615650175746 5.455570109804259E-5 52-53 1.2002254241569371E-4 8.674356474588773E-4 0.0 0.05833095561402714 8.183355164706389E-5 54-55 1.2002254241569371E-4 9.056246382275071E-4 0.0 0.06509586255018443 1.1456697230588945E-4 56-57 1.2002254241569371E-4 9.383580588863327E-4 0.0 0.07208444786084368 1.2547811252549797E-4 58-59 1.2002254241569371E-4 9.492691991059411E-4 0.0 0.07904029975084412 1.3093368263530222E-4 60-61 1.2547811252549797E-4 9.87458189874571E-4 0.0 0.08570700642502492 1.3093368263530222E-4 62-63 1.4184482285491075E-4 9.929137599843753E-4 0.0 0.09218822371547239 1.4184482285491075E-4 64-65 1.4184482285491075E-4 0.001091114021960852 0.0 0.09824390653735511 1.4184482285491075E-4 66-67 1.4184482285491075E-4 0.0011020251621804604 0.0 0.10426685593857901 1.4730039296471502E-4 68-69 1.4184482285491075E-4 0.0011183918725098732 0.0 0.110398916741999 1.5275596307451927E-4 70-71 1.4184482285491075E-4 0.0011238474426196775 0.0 0.11617636548828171 1.5275596307451927E-4 72-73 1.745782435137363E-4 0.0011293030127294819 0.0 0.12066629968865061 1.636671032941278E-4 74-75 1.745782435137363E-4 0.0011674920034981115 0.0 0.1243597206529881 1.636671032941278E-4 76-77 1.8003381362354057E-4 0.0012165921344863499 0.0 0.12775308526128637 1.6912267340393205E-4 78-79 1.8548938373334482E-4 0.0012547811252549797 0.0 0.1307318265412395 1.745782435137363E-4 80-81 1.8548938373334482E-4 0.0012547811252549797 0.0 0.1320466189377023 1.8003381362354057E-4 82-83 1.9094495384314907E-4 0.0012547811252549797 0.0 0.13249397568670623 1.8548938373334482E-4 84-85 1.9640052395295335E-4 0.0012547811252549797 0.0 0.13288132116450235 1.8548938373334482E-4 86-87 1.9640052395295335E-4 0.0012766034056941968 0.0 0.13315955524010237 1.8548938373334482E-4 88-89 1.9640052395295335E-4 0.001303881256243218 0.0 0.13324684436185924 1.8548938373334482E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15510 0.0 53.823956 1 GTATCAA 29325 0.0 39.18434 1 CTTATAC 9260 0.0 39.061386 1 ATCAACG 36115 0.0 31.348164 3 TCAACGC 36160 0.0 31.284874 4 TATACAC 12760 0.0 31.035711 3 TATCAAC 36875 0.0 30.885847 2 CAACGCA 37050 0.0 30.579084 5 AACGCAG 37920 0.0 29.86463 6 TGGTATC 6390 0.0 27.772434 2 GTGGTAT 6695 0.0 27.709219 1 TTATACA 14280 0.0 26.753407 2 ACGCAGA 42855 0.0 26.395912 7 CGCAGAG 43210 0.0 26.208443 8 TACACAT 16700 0.0 23.712866 5 ACACATC 15940 0.0 23.425129 6 GCAGAGT 48945 0.0 23.11159 9 ACATCTC 16575 0.0 22.757568 8 GTACATG 36430 0.0 21.427275 1 GAGTACT 27870 0.0 21.334696 12-13 >>END_MODULE