##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139711_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9802728 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.058514017730573 32.0 28.0 33.0 18.0 33.0 2 30.697103398156106 33.0 31.0 33.0 25.0 33.0 3 31.602373543364664 33.0 32.0 33.0 27.0 34.0 4 30.890987080331108 33.0 31.0 33.0 27.0 34.0 5 31.809039381690486 33.0 32.0 33.0 30.0 34.0 6 35.247627599174436 37.0 35.0 38.0 29.0 38.0 7 35.86165167492151 38.0 36.0 38.0 31.0 38.0 8 36.00845121888519 38.0 37.0 38.0 31.0 38.0 9 36.309514861577306 38.0 37.0 38.0 33.0 38.0 10-11 36.44572163993533 38.0 37.5 38.0 33.5 38.0 12-13 36.48734724660319 38.0 38.0 38.0 34.0 38.0 14-15 36.49451152781144 38.0 38.0 38.0 34.0 38.0 16-17 36.48604505806955 38.0 38.0 38.0 34.0 38.0 18-19 36.501240471019905 38.0 38.0 38.0 34.0 38.0 20-21 36.49682514241367 38.0 38.0 38.0 34.0 38.0 22-23 36.48477413898341 38.0 38.0 38.0 34.0 38.0 24-25 36.47096831663957 38.0 38.0 38.0 34.0 38.0 26-27 36.412968394477275 38.0 38.0 38.0 34.0 38.0 28-29 36.39557700971766 38.0 38.0 38.0 34.0 38.0 30-31 36.396771920781234 38.0 38.0 38.0 34.0 38.0 32-33 36.38079349800017 38.0 38.0 38.0 33.5 38.0 34-35 36.34070031008889 38.0 37.5 38.0 33.0 38.0 36-37 36.31737256293529 38.0 37.0 38.0 33.0 38.0 38-39 36.30309024230101 38.0 37.0 38.0 33.0 38.0 40-41 36.29998214285379 38.0 37.0 38.0 33.0 38.0 42-43 36.24156530263653 38.0 37.0 38.0 33.0 38.0 44-45 36.18628449486211 38.0 37.0 38.0 33.0 38.0 46-47 36.14176237437405 38.0 37.0 38.0 33.0 38.0 48-49 36.08809911702514 38.0 37.0 38.0 33.0 38.0 50-51 36.055636503349604 38.0 37.0 38.0 32.5 38.0 52-53 36.033548660880456 38.0 37.0 38.0 32.0 38.0 54-55 35.98866522330562 38.0 37.0 38.0 31.0 38.0 56-57 35.98921207852139 38.0 37.0 38.0 31.0 38.0 58-59 35.96496247807245 38.0 37.0 38.0 31.0 38.0 60-61 35.94990084279233 38.0 37.0 38.0 31.0 38.0 62-63 35.9452285023119 38.0 37.0 38.0 31.0 38.0 64-65 35.92713813308047 38.0 37.0 38.0 31.0 38.0 66-67 35.93015409007816 38.0 37.0 38.0 31.0 38.0 68-69 35.91369730152284 38.0 37.0 38.0 31.0 38.0 70-71 35.8848152330237 38.0 37.0 38.0 31.0 38.0 72-73 35.85772916250781 38.0 37.0 38.0 31.0 38.0 74-75 35.871160908475076 38.0 37.0 38.0 31.0 38.0 76-77 35.849943648717996 38.0 37.0 38.0 31.0 38.0 78-79 35.836065735999064 38.0 37.0 38.0 31.0 38.0 80-81 35.791537506333086 38.0 37.0 38.0 31.0 38.0 82-83 35.79216134810039 38.0 37.0 38.0 31.0 38.0 84-85 35.785182250139556 38.0 37.0 38.0 31.0 38.0 86-87 35.77662044388336 38.0 37.0 38.0 31.0 38.0 88-89 35.74914586358374 38.0 37.0 38.0 31.0 38.0 90-91 35.7282768528379 38.0 36.5 38.0 31.0 38.0 92-93 35.67561825130609 38.0 36.0 38.0 30.0 38.0 94-95 35.66584333522469 38.0 36.0 38.0 30.0 38.0 96-97 35.69789836488039 38.0 36.0 38.0 31.0 38.0 98-99 35.73549740409395 38.0 36.0 38.0 31.0 38.0 100-101 35.206931674873594 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 15.0 20 110.0 21 804.0 22 3316.0 23 9613.0 24 21573.0 25 39408.0 26 63283.0 27 94665.0 28 131771.0 29 174227.0 30 221652.0 31 276999.0 32 345423.0 33 440750.0 34 590477.0 35 877757.0 36 1706292.0 37 4804590.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.52147402233337 18.217734899917655 14.326267137066335 22.934523940682634 2 14.582277504792543 20.498161328152733 42.643241758824686 22.276319408230037 3 18.212876124751453 26.580568893707614 30.210000531497123 24.99655445004381 4 12.344155626882639 19.290079251408386 38.139077203815106 30.226687917893873 5 14.347097302426452 37.111776185731166 34.7389410874824 13.802185424359987 6 29.588814460627695 38.1135740989651 18.673914036990517 13.623697403416681 7 26.407363338042227 33.26311818506032 22.708219589485704 17.621298887411747 8 24.3545470199724 36.78336275371509 20.8075139899832 18.054576236329314 9 25.54860238904925 17.326982856200846 21.140778362921015 35.98363639182889 10-11 24.074436218162944 26.980045758690846 28.59636623601104 20.349151787135174 12-13 25.126668821168963 24.550732204341486 28.80645061252337 21.516148361966177 14-15 22.305285834718664 25.80469436671098 26.652494081239425 25.237525717330932 16-17 21.584180444464028 29.03958469519913 27.279615429500847 22.096619430835986 18-19 21.60027290362438 27.852721201689977 29.397061715881538 21.149944178804102 20-21 22.447384821361442 26.900721829967555 29.455573695017172 21.196319653653827 22-23 22.209578062907312 26.8110029079866 29.31457705950247 21.664841969603618 24-25 21.943111824562735 27.013949856758668 29.365529062337632 21.677409256340965 26-27 21.823042195188787 27.158475243553504 29.357032012659527 21.66145054859818 28-29 21.782046640743967 27.103208017027846 29.399201284879332 21.715544057348854 30-31 22.03962805826399 27.015445098829925 29.30038849133395 21.644538351572134 32-33 21.761683029688633 27.157047365684665 29.29390077825147 21.787368826375232 34-35 21.944101276714072 27.147990161351355 29.21897238829041 21.688936173644166 36-37 21.92308106861755 27.084483051421298 29.27585152885495 21.716584351106203 38-39 21.772466728244623 27.21282500777333 29.30625929907163 21.708448964910424 40-41 22.032181330471992 27.08903871071689 29.134626318425767 21.74415364038536 42-43 21.966490623351863 27.160332572904988 28.951032528259034 21.92214427548412 44-45 21.958671464224093 27.326888306923557 28.823632531322733 21.890807697529613 46-47 22.14930925102694 27.256024254793676 28.486847282894605 22.107819211284777 48-49 22.020745826182605 27.402356963353085 28.43418921399115 22.142707996473156 50-51 22.03750490697722 27.56390070069647 28.32638056840834 22.07221382391797 52-53 22.232626448390477 27.478002771988773 28.239948467525718 22.04942231209503 54-55 22.158170645678055 27.41278856739274 28.22715000872467 22.201890778204532 56-57 22.145283326794505 27.56195868524846 28.169171593283256 22.12358639467378 58-59 22.079595248375096 27.593167987578443 28.265827744341017 22.061409019705444 60-61 22.195149947789997 27.581505680428 28.21180083470155 22.011543537080456 62-63 22.119908944701244 27.674497462059144 28.1870843294463 22.018509263793312 64-65 22.11631042843596 27.638935277960652 28.15116496459603 22.093589329007354 66-67 22.173362051243302 27.649996216111017 28.02270053532992 22.15394119731576 68-69 22.073056572037864 27.614193407423095 28.154498374691656 22.158251645847386 70-71 22.14179506277564 27.35680807786939 28.216564922325478 22.28483193702949 72-73 22.19530478074965 27.410699194955985 28.10961937137048 22.28437665292388 74-75 22.05281184600715 27.551523618952857 28.109785693698917 22.285878841341077 76-77 22.227955692834573 27.43808633482666 28.03320505169719 22.300752920641578 78-79 22.170845946202554 27.499101987674983 27.965157369687816 22.36489469643465 80-81 22.209441520152133 27.470598449551005 27.981110768477453 22.338849261819416 82-83 22.257943979242082 27.47927119673913 28.014592742927608 22.248192081091183 84-85 22.289176537930068 27.448423924503956 27.981864171791372 22.280535365774604 86-87 22.156735064189146 27.515379371208425 28.0376581671388 22.290227397463628 88-89 22.22724697369216 27.53051864827909 27.934476337964043 22.307758040064705 90-91 22.267870943774234 27.540196562967484 27.93343527452808 22.258497218730202 92-93 22.321079159354067 27.557033912077618 27.860546976535698 22.261339952032614 94-95 22.200837436204587 27.581501824398064 27.900055294687476 22.31760544470987 96-97 22.2521854048216 27.573711995297334 27.921924099372113 22.25217850050895 98-99 22.440275632366628 28.176160738621412 27.966708009903527 21.41685561910843 100-101 23.078389213366776 30.6486356678293 25.33545002043831 20.937525098365615 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2766.0 1 2538.0 2 3147.0 3 4132.5 4 4906.0 5 7241.0 6 9889.5 7 13074.5 8 16794.0 9 18442.0 10 17322.5 11 15508.0 12 15800.0 13 18973.5 14 26559.0 15 36501.0 16 44917.0 17 50989.0 18 52825.5 19 50118.0 20 45648.5 21 41438.0 22 39864.5 23 43217.5 24 51593.5 25 65167.5 26 83380.5 27 103369.0 28 123966.5 29 144819.0 30 163921.5 31 183165.5 32 204434.0 33 227229.0 34 249159.5 35 269149.0 36 292568.0 37 313412.0 38 328953.0 39 342602.5 40 356328.0 41 369448.5 42 377558.5 43 386004.5 44 395963.5 45 405153.0 46 408713.5 47 406585.5 48 404600.0 49 400676.0 50 393791.5 51 381752.5 52 365836.0 53 348595.5 54 328860.5 55 306831.0 56 281903.0 57 255747.5 58 229498.5 59 200217.0 60 167958.5 61 137075.0 62 108722.0 63 84135.0 64 64073.5 65 47913.0 66 35414.5 67 27049.5 68 20892.0 69 15468.0 70 11378.5 71 8348.0 72 6026.0 73 4143.5 74 2726.0 75 1793.5 76 1194.5 77 721.5 78 447.5 79 282.5 80 172.5 81 110.0 82 79.5 83 52.0 84 30.5 85 20.0 86 14.0 87 9.0 88 3.5 89 3.5 90 3.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0023360844042597125 4 0.0 5 0.050975605974173714 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.491492764828978E-4 28-29 2.552679780259198E-4 30-31 0.0 32-33 0.0 34-35 1.1299569090932717E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.4980262701376864E-4 48-49 0.0 50-51 5.445389873034201E-6 52-53 1.6463345267246466E-5 54-55 9.62331417095508E-4 56-57 0.001874044362868979 58-59 0.00822026483769056 60-61 0.007555318583830176 62-63 0.0036243532490494662 64-65 0.004828144896786563 66-67 0.006249731092493806 68-69 0.003315583868430094 70-71 0.0050291311678945985 72-73 8.958816022114928E-4 74-75 0.001396136489702522 76-77 0.0012446435874184315 78-79 9.8538683715305E-4 80-81 3.759847746218799E-5 82-83 0.0 84-85 0.0 86-87 2.9145298575125215E-4 88-89 8.387864280686247E-4 90-91 0.0 92-93 0.0 94-95 1.224837749826073E-4 96-97 2.830760172336679E-4 98-99 1.4277620914316E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 177.0 20-21 613.0 22-23 1381.0 24-25 1656.0 26-27 3603.0 28-29 8003.0 30-31 19412.0 32-33 25221.0 34-35 34852.0 36-37 53479.0 38-39 62013.0 40-41 62699.0 42-43 73216.0 44-45 88265.0 46-47 87615.0 48-49 79992.0 50-51 72392.0 52-53 69244.0 54-55 74808.0 56-57 77953.0 58-59 78203.0 60-61 76815.0 62-63 74325.0 64-65 79699.0 66-67 85273.0 68-69 87095.0 70-71 89127.0 72-73 78813.0 74-75 80683.0 76-77 86124.0 78-79 88546.0 80-81 89124.0 82-83 85518.0 84-85 84968.0 86-87 88791.0 88-89 92285.0 90-91 95299.0 92-93 93443.0 94-95 99933.0 96-97 156057.0 98-99 811918.0 100-101 6304095.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.64814316880582 #Duplication Level Percentage of deduplicated Percentage of total 1 90.42313948442363 77.44573996334813 2 6.63654714966488 11.368158808420555 3 1.628308582113664 4.183848196915989 4 0.5888442281389328 2.0173365902307303 5 0.2642470231464116 1.13161334351873 6 0.1480972003187643 0.7610550129480504 7 0.09038201039903437 0.5418735956578694 8 0.056540820390618925 0.3874093023757971 9 0.03442572102016403 0.2653649174361939 >10 0.1269908405459491 1.6779300015816425 >50 0.0018994167967148396 0.11048611652714199 >100 5.386707764304834E-4 0.07464341361488262 >500 1.94261412941115E-5 0.013693180420282466 >1k 1.942612357228683E-5 0.020847557004064723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.0201241939998744E-5 0.0 3 0.0 0.0 0.0 3.0603725819996226E-5 0.0 4 0.0 1.0201241939998744E-5 0.0 5.100620969999372E-5 2.0402483879997488E-5 5 0.0 1.0201241939998744E-5 0.0 5.100620969999372E-5 2.0402483879997488E-5 6 8.160993551998995E-5 1.0201241939998744E-5 0.0 5.100620969999372E-5 2.0402483879997488E-5 7 8.160993551998995E-5 1.0201241939998744E-5 0.0 5.100620969999372E-5 2.0402483879997488E-5 8 8.160993551998995E-5 2.0402483879997488E-5 0.0 5.100620969999372E-5 2.0402483879997488E-5 9 8.160993551998995E-5 1.3261614521998367E-4 0.0 5.100620969999372E-5 5.100620969999372E-5 10-11 1.1221366133998617E-4 1.3261614521998367E-4 0.0 6.120745163999245E-5 5.100620969999372E-5 12-13 1.3261614521998367E-4 1.3771676618998304E-4 0.0 6.120745163999245E-5 5.100620969999372E-5 14-15 1.428173871599824E-4 1.78521733949978E-4 0.0 6.630807260999183E-5 8.160993551998994E-5 16-17 1.8362235491997737E-4 1.8362235491997737E-4 0.0 7.14086935799912E-5 1.0201241939998743E-4 18-19 1.8362235491997737E-4 1.9892421782997547E-4 0.0 7.14086935799912E-5 1.224149032799849E-4 20-21 1.8362235491997737E-4 2.2442732267997234E-4 0.0 8.160993551998995E-5 1.224149032799849E-4 22-23 1.8872297588997674E-4 2.6013166946996794E-4 0.0 8.671055648998932E-5 1.2751552424998427E-4 24-25 1.989242178299755E-4 3.3154036304995914E-4 0.0 1.0201241939998743E-4 1.3771676618998304E-4 26-27 2.0402483879997487E-4 3.57043467899956E-4 0.0 1.6832049200997927E-4 1.428173871599824E-4 28-29 2.0402483879997487E-4 3.57043467899956E-4 0.0 4.0804967759994974E-4 1.428173871599824E-4 30-31 2.142260807399736E-4 4.0804967759994974E-4 0.0 0.0011374384763098598 1.428173871599824E-4 32-33 2.142260807399736E-4 4.0804967759994974E-4 0.0 0.002647222283429674 1.5301862909998114E-4 34-35 2.142260807399736E-4 4.947602340899391E-4 0.0 0.004855791163439402 1.7342111297997864E-4 36-37 2.448298065599698E-4 5.865714115499277E-4 0.0 0.008150792310058996 1.7342111297997864E-4 38-39 2.448298065599698E-4 6.018732744599259E-4 0.0 0.013174903965508376 1.78521733949978E-4 40-41 2.550310484999686E-4 6.630807260999183E-4 0.0 0.018688675234077697 1.8362235491997737E-4 42-43 2.703329114099667E-4 6.987850728899139E-4 0.0 0.023881107381537058 1.8872297588997674E-4 44-45 2.7543353237996607E-4 7.599925245299064E-4 0.0 0.029884538263226318 1.9382359685997613E-4 46-47 2.7543353237996607E-4 8.058981132599007E-4 0.0 0.036438836209675515 1.9382359685997613E-4 48-49 2.7543353237996607E-4 8.109987342299E-4 0.0 0.04272790186568474 1.9382359685997613E-4 50-51 3.1623850013996107E-4 9.793192262398795E-4 0.0 0.049083275594303956 1.9382359685997613E-4 52-53 3.417416049899579E-4 9.895204681798781E-4 0.0 0.05527032883091319 2.0912545976997424E-4 54-55 3.57043467899956E-4 0.0010252248149698736 0.0 0.061737916220872394 2.2442732267997234E-4 56-57 3.7234533080995414E-4 0.0010405266778798718 0.0 0.06854724521582156 2.2442732267997234E-4 58-59 3.8254657274995287E-4 0.0010762310246698673 0.0 0.07485671335571079 2.2442732267997234E-4 60-61 4.0804967759994974E-4 0.001111935371459863 0.0 0.08132940136663999 2.2442732267997234E-4 62-63 4.641565082699428E-4 0.001152740339219858 0.0 0.08756746081294921 2.448298065599698E-4 64-65 4.692571292399422E-4 0.001387368903839829 0.0 0.09353518734784848 2.448298065599698E-4 66-67 4.7945837117994094E-4 0.0014128720086898261 0.0 0.0997936492780377 2.448298065599698E-4 68-69 4.7945837117994094E-4 0.0014536769764498208 0.0 0.10590929382106695 2.448298065599698E-4 70-71 4.7945837117994094E-4 0.0014638782183898197 0.0 0.11165769365425623 2.703329114099667E-4 72-73 4.7945837117994094E-4 0.0014740794603298184 0.0 0.11607483141427569 3.060372581999623E-4 74-75 4.7945837117994094E-4 0.0015199850490598128 0.0 0.11965546733521526 3.060372581999623E-4 76-77 4.845589921499403E-4 0.0015811925006998053 0.0 0.12264953184460489 3.1623850013996107E-4 78-79 4.896596131199396E-4 0.0016219974684598003 0.0 0.1257252062895145 3.264397420799598E-4 80-81 4.896596131199396E-4 0.0016219974684598003 0.0 0.12711767581432434 3.264397420799598E-4 82-83 4.896596131199396E-4 0.001632198710399799 0.0 0.12761753666938427 3.57043467899956E-4 84-85 4.998608550599384E-4 0.0016423999523397976 0.0 0.1282041080809342 3.57043467899956E-4 86-87 4.998608550599384E-4 0.0016423999523397976 0.0 0.12842343478264417 3.57043467899956E-4 88-89 4.998608550599384E-4 0.001673003678159794 0.0 0.12845403850846418 3.6724470983995474E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14795 0.0 54.84689 1 GTATCAA 28055 0.0 38.99301 1 TCAACGC 33700 0.0 31.926504 4 ATCAACG 33940 0.0 31.726646 3 TATCAAC 34785 0.0 31.165438 2 CAACGCA 34715 0.0 31.01773 5 AACGCAG 35630 0.0 30.264957 6 ACGCAGA 39955 0.0 26.999596 7 CGCAGAG 40960 0.0 26.389425 8 GTGGTAT 6325 0.0 23.85605 1 TGGTATC 6050 0.0 23.523346 2 GCAGAGT 47025 0.0 23.04054 9 GTACATG 31905 0.0 21.752264 1 TACATGG 31830 0.0 21.372566 2 GAGTACT 28745 0.0 21.350351 12-13 ACATGGG 32155 0.0 20.50332 3 CAGAGTA 46250 0.0 20.499456 10-11 GTACTTT 31860 0.0 19.29018 14-15 AGAGTAC 43240 0.0 19.082851 10-11 CATGGGG 22085 0.0 18.361208 4 >>END_MODULE