##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139710_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12147735 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.977783018809678 32.0 27.0 33.0 18.0 33.0 2 30.695922737860187 33.0 31.0 33.0 25.0 33.0 3 31.612780489531588 33.0 32.0 33.0 27.0 34.0 4 30.8989279071366 33.0 31.0 33.0 27.0 34.0 5 31.82878709487818 33.0 32.0 33.0 30.0 34.0 6 35.27368879877607 37.0 35.0 38.0 29.0 38.0 7 35.915336809701564 38.0 36.0 38.0 31.0 38.0 8 36.0378156915672 38.0 37.0 38.0 31.0 38.0 9 36.33270556198337 38.0 37.0 38.0 33.0 38.0 10-11 36.46294560261646 38.0 37.5 38.0 34.0 38.0 12-13 36.50086505838331 38.0 38.0 38.0 34.0 38.0 14-15 36.509809729962 38.0 38.0 38.0 34.0 38.0 16-17 36.50252837257316 38.0 38.0 38.0 34.0 38.0 18-19 36.52331446973449 38.0 38.0 38.0 34.0 38.0 20-21 36.518781738811924 38.0 38.0 38.0 34.0 38.0 22-23 36.5061845983765 38.0 38.0 38.0 34.0 38.0 24-25 36.488734310607846 38.0 38.0 38.0 34.0 38.0 26-27 36.43282191884222 38.0 38.0 38.0 34.0 38.0 28-29 36.41143876101116 38.0 38.0 38.0 34.0 38.0 30-31 36.41724075368754 38.0 38.0 38.0 34.0 38.0 32-33 36.39452152716981 38.0 38.0 38.0 34.0 38.0 34-35 36.345540834215726 38.0 38.0 38.0 33.0 38.0 36-37 36.32166624458028 38.0 37.5 38.0 33.0 38.0 38-39 36.287739784384065 38.0 37.0 38.0 33.0 38.0 40-41 36.304666646643156 38.0 37.0 38.0 33.0 38.0 42-43 36.252414536429285 38.0 37.0 38.0 33.0 38.0 44-45 36.194861214520614 38.0 37.0 38.0 33.0 38.0 46-47 36.15334613588165 38.0 37.0 38.0 33.0 38.0 48-49 36.105445915244324 38.0 37.0 38.0 33.0 38.0 50-51 36.076354659044334 38.0 37.0 38.0 33.0 38.0 52-53 36.065596717040165 38.0 37.0 38.0 32.5 38.0 54-55 36.02132571462051 38.0 37.0 38.0 31.0 38.0 56-57 36.01980520499497 38.0 37.0 38.0 31.0 38.0 58-59 35.9928701957831 38.0 37.0 38.0 31.0 38.0 60-61 35.97770332281928 38.0 37.0 38.0 31.0 38.0 62-63 35.97117388412762 38.0 37.0 38.0 31.0 38.0 64-65 35.95823113650327 38.0 37.0 38.0 31.0 38.0 66-67 35.95818316619825 38.0 37.0 38.0 31.0 38.0 68-69 35.93916951016364 38.0 37.0 38.0 31.0 38.0 70-71 35.9107255482197 38.0 37.0 38.0 31.0 38.0 72-73 35.88379495815541 38.0 37.0 38.0 31.0 38.0 74-75 35.901617011638805 38.0 37.0 38.0 31.0 38.0 76-77 35.88533902463104 38.0 37.0 38.0 31.0 38.0 78-79 35.87388465217588 38.0 37.0 38.0 31.0 38.0 80-81 35.83316011369981 38.0 37.0 38.0 31.0 38.0 82-83 35.832734282210275 38.0 37.0 38.0 31.0 38.0 84-85 35.83089347600094 38.0 37.0 38.0 31.0 38.0 86-87 35.824521421595826 38.0 37.0 38.0 31.0 38.0 88-89 35.79651522293335 38.0 37.0 38.0 31.0 38.0 90-91 35.77737385933259 38.0 37.0 38.0 31.0 38.0 92-93 35.727183859189935 38.0 37.0 38.0 31.0 38.0 94-95 35.7173772579975 38.0 36.0 38.0 31.0 38.0 96-97 35.743343207286074 38.0 36.0 38.0 31.0 38.0 98-99 35.773846414643884 38.0 36.5 38.0 31.0 38.0 100-101 35.23879856426545 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 9.0 19 28.0 20 200.0 21 1014.0 22 4183.0 23 12014.0 24 26848.0 25 48749.0 26 78800.0 27 116877.0 28 162139.0 29 213542.0 30 270132.0 31 337884.0 32 421475.0 33 538818.0 34 725360.0 35 1082014.0 36 2117176.0 37 5990470.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.70110971304527 19.249769607256003 14.750412319662884 22.298708360035842 2 13.864732808214864 21.01879074576454 44.062963177909296 21.0535132681113 3 17.476724729371007 28.06422948963247 31.054949675824755 23.404096105171774 4 11.671723164853367 20.24027524472669 39.330294906828314 28.757706683591632 5 13.213107849190864 38.16338795829418 35.563219066741155 13.060285125773802 6 27.66255602381843 39.59893757972165 19.436248815108332 13.302257581351585 7 24.98912760280003 34.290285390651015 23.584445989314055 17.1361410172349 8 23.357366620197098 37.71382072460422 21.546773945924897 17.382038709273786 9 25.10120610961632 17.683238891859265 21.88596474980727 35.329590248717146 10-11 23.155353652347536 27.877995362921563 29.293357979903252 19.67329300482765 12-13 24.374321632798214 25.40800404355215 29.56921598964745 20.648458334002182 14-15 21.569621826620352 26.762631058382492 27.48281058156109 24.18493653343607 16-17 20.555791699267054 30.11529845338651 28.132315535872145 21.196594311474293 18-19 20.582787655476515 28.752442327726115 30.440929934675065 20.223840082122305 20-21 21.468496260267543 27.707590877316377 30.47197795449857 20.35193490791751 22-23 21.226136421528146 27.77842871584955 30.326939812728344 20.668495049893956 24-25 20.973195641513065 27.95385058781965 30.418163185536923 20.654790585130364 26-27 20.803646702362265 28.054203687938728 30.455597531439434 20.68655207825958 28-29 20.529322775932812 28.013898890176357 30.619346941371113 20.83743139251972 30-31 20.987355026694583 27.821031029304223 30.332188413352522 20.859425530648668 32-33 20.890973070321248 27.958926324057547 30.420829411001137 20.72927119462007 34-35 21.00757941774261 28.239744802629485 30.32003080077145 20.43264497885646 36-37 20.80346344085465 28.08869619349128 30.268020414082663 20.83981995157141 38-39 20.742285670687554 28.103869549746026 30.35611678409294 20.797727995473476 40-41 20.94875364744419 27.95362588807751 30.297543831820974 20.800076632657323 42-43 21.044051369190495 28.024203622855833 30.024678032860706 20.90706697509296 44-45 20.900579516705456 28.333398304796773 29.832350338090226 20.93367184040755 46-47 21.169520033681604 28.21543144785892 29.36732846224441 21.24772005621507 48-49 21.121192464183558 28.33481860153093 29.275365550718362 21.268623383567146 50-51 21.007466821174106 28.477389714308092 29.27112272883633 21.244020735681474 52-53 21.19781407828603 28.486516892951425 29.149176603994988 21.166492424767565 54-55 21.117903962672102 28.575786122141555 28.93999829878312 21.36631161640322 56-57 21.30031438080358 28.704766043808906 28.66786128894891 21.327058286438604 58-59 21.03083828765432 28.92567329883702 28.969075982083027 21.07441243142564 60-61 21.271470342425186 29.13074522601654 28.63910628126763 20.95867815029064 62-63 21.053876641017382 29.263748475318568 28.627798299715657 21.05457658394839 64-65 21.00941575139569 29.165061224957796 28.650963157531393 21.17455986611512 66-67 21.14193498912855 29.16356588207092 28.50804137476286 21.186457754037672 68-69 21.084563738687223 28.999817747927036 28.687146580816563 21.228471932569178 70-71 21.178649700984614 28.63451681288177 28.81865061525768 21.368182870875934 72-73 21.222159334060382 28.651728288001564 28.779469622717045 21.34664275522101 74-75 21.161446285678185 28.727072428203428 28.713757291546944 21.397723994571443 76-77 21.241910765215028 28.616821420815103 28.698817102724817 21.442450711245055 78-79 21.19991594247731 28.64670920304182 28.68480620804071 21.46856864644016 80-81 21.272319575921877 28.694107502567018 28.59156886793455 21.442004053576554 82-83 21.305744788758858 28.638840783868076 28.724242064961857 21.33117236241121 84-85 21.3780723972354 28.663317026056873 28.59962523395926 21.35898534274846 86-87 21.163992988722395 28.7991348407311 28.628299603681455 21.408572566865047 88-89 21.31718503932112 28.693395836678143 28.574107444111892 21.415311679888845 90-91 21.358812508225476 28.68075661885745 28.60291819300781 21.357512679909266 92-93 21.35036717231768 28.720323649684254 28.517977245164545 21.41133193283352 94-95 21.241578484073536 28.783450783975688 28.544546045842463 21.430424686108314 96-97 21.267464450816316 28.827649365088654 28.542313769091226 21.362572415003804 98-99 21.38236000763704 29.38681551238244 28.664343713268053 20.566480766712466 100-101 24.960669245086446 36.24702589561288 29.752538105610622 9.03976675369006 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4861.0 1 4162.0 2 3902.5 3 4991.5 4 6931.0 5 10586.0 6 13616.5 7 14499.5 8 14025.5 9 13049.5 10 12532.5 11 13258.5 12 15851.0 13 23839.5 14 38571.0 15 57226.5 16 74578.0 17 85821.5 18 90848.5 19 86423.0 20 78580.0 21 72831.0 22 70430.5 23 76469.0 24 90095.5 25 111397.5 26 139770.0 27 170911.0 28 202317.0 29 234763.5 30 266868.0 31 297684.0 32 329351.5 33 361549.0 34 391541.5 35 420548.0 36 450895.0 37 474670.0 38 489521.0 39 498461.0 40 506514.5 41 512038.5 42 510627.0 43 510755.5 44 514229.5 45 525212.5 46 524265.5 47 506651.0 48 490771.0 49 468430.5 50 441397.5 51 414613.0 52 385262.0 53 354011.0 54 323121.5 55 292354.5 56 261185.5 57 230230.5 58 201581.0 59 173610.0 60 145643.0 61 118822.0 62 92868.0 63 70980.5 64 54492.0 65 41002.5 66 29573.0 67 21889.5 68 16695.0 69 12450.0 70 9344.0 71 6938.0 72 5147.0 73 3860.5 74 2721.5 75 1951.0 76 1338.0 77 847.5 78 609.0 79 417.0 80 258.5 81 165.5 82 126.5 83 93.0 84 70.5 85 55.0 86 40.0 87 29.5 88 18.5 89 11.5 90 8.5 91 4.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0024119722730204436 4 0.0 5 0.05117003293206512 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 4.115993639966628E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.819212530864669E-4 28-29 2.268198187074553E-4 30-31 0.0 32-33 0.0 34-35 7.893792429653637E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.1772501381415834E-4 48-49 0.0 50-51 8.900197281772949E-6 52-53 3.1528833117886304E-5 54-55 9.996366775057574E-4 56-57 0.002238547821000762 58-59 0.008697389596902635 60-61 0.007720182387319163 62-63 0.004114360105159261 64-65 0.005126003177453153 66-67 0.006619508386989602 68-69 0.0036791548042056066 70-71 0.005527972432918674 72-73 9.2867243514478E-4 74-75 0.001674512773868467 76-77 0.001365036529095959 78-79 0.0010387623520529735 80-81 6.311684221389057E-5 82-83 0.0 84-85 0.0 86-87 2.6189102561654333E-4 88-89 9.284777557454673E-4 90-91 0.0 92-93 5.682770045800854E-6 94-95 1.9018288620280217E-4 96-97 3.74508516089588E-4 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1541.0 20-21 4801.0 22-23 3456.0 24-25 3973.0 26-27 6905.0 28-29 13295.0 30-31 29468.0 32-33 38132.0 34-35 50762.0 36-37 77503.0 38-39 93269.0 40-41 92430.0 42-43 106902.0 44-45 125704.0 46-47 125163.0 48-49 113034.0 50-51 137216.0 52-53 95159.0 54-55 102049.0 56-57 108749.0 58-59 110465.0 60-61 108581.0 62-63 105413.0 64-65 116395.0 66-67 126872.0 68-69 126196.0 70-71 136772.0 72-73 107244.0 74-75 108703.0 76-77 115032.0 78-79 119605.0 80-81 120908.0 82-83 112462.0 84-85 111291.0 86-87 115375.0 88-89 120944.0 90-91 127475.0 92-93 121342.0 94-95 126604.0 96-97 185152.0 98-99 936907.0 100-101 7458486.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.8104020482741 #Duplication Level Percentage of deduplicated Percentage of total 1 89.13291135751234 74.70265136606285 2 7.416597185103846 12.431759838273026 3 1.9167330504484936 4.8192650273190925 4 0.7044604944682301 2.3616446907403335 5 0.3124533738674041 1.309342144258342 6 0.1646737002613555 0.828082141540871 7 0.09995460058389594 0.5864064683057679 8 0.06489744729329605 0.43512649196462555 9 0.042633401202933345 0.3215810245952895 >10 0.14025861621803073 1.8005495170744412 >50 0.003156848936611437 0.1777549092945722 >100 0.0011845205946501706 0.1697838361067283 >500 6.83286290326514E-5 0.034872966745442546 >1k 1.707487989055463E-5 0.021179577718589936 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 8.231987279933255E-6 0.0 0.0 0.0 4 0.0 4.115993639966627E-5 0.0 0.0 8.231987279933255E-6 5 8.231987279933255E-6 4.115993639966627E-5 0.0 0.0 8.231987279933255E-6 6 8.231987279933255E-6 4.115993639966627E-5 0.0 0.0 8.231987279933255E-6 7 8.231987279933255E-6 4.115993639966627E-5 0.0 0.0 8.231987279933255E-6 8 8.231987279933255E-6 4.115993639966627E-5 0.0 0.0 8.231987279933255E-6 9 8.231987279933255E-6 1.0701583463913232E-4 0.0 0.0 8.231987279933255E-6 10-11 1.646397455986651E-5 1.0701583463913232E-4 0.0 0.0 8.231987279933255E-6 12-13 2.4695961839799766E-5 1.0701583463913232E-4 0.0 0.0 1.646397455986651E-5 14-15 4.115993639966627E-5 1.3994378375886533E-4 0.0 0.0 4.115993639966627E-5 16-17 6.173990459949942E-5 1.5229176467876522E-4 0.0 0.0 4.115993639966627E-5 18-19 6.997189187943266E-5 1.6052375195869847E-4 0.0 0.0 4.115993639966627E-5 20-21 7.40878855193993E-5 1.646397455986651E-4 0.0 0.0 5.762391095953278E-5 22-23 7.40878855193993E-5 1.811037201585316E-4 0.0 4.115993639966628E-6 6.585589823946604E-5 24-25 9.05518600792658E-5 2.222636565581979E-4 0.0 1.646397455986651E-5 7.40878855193993E-5 26-27 9.05518600792658E-5 2.3049564383813113E-4 0.0 7.820387915936592E-5 7.40878855193993E-5 28-29 9.05518600792658E-5 2.387276311180644E-4 0.0 3.0458352935753045E-4 7.820387915936592E-5 30-31 1.0701583463913232E-4 2.716555802377974E-4 0.0 0.0012471460729098882 8.643586643929918E-5 32-33 1.2759580283896546E-4 2.716555802377974E-4 0.0 0.002914123497096372 9.878384735919906E-5 34-35 1.4405977739883198E-4 3.2927949119733024E-4 0.0 0.005375487693796416 9.878384735919906E-5 36-37 1.5640775831873185E-4 3.86903402156863E-4 0.0 0.008754718472209017 9.878384735919906E-5 38-39 1.646397455986651E-4 3.992513830767629E-4 0.0 0.013982030394966634 1.0701583463913232E-4 40-41 1.646397455986651E-4 4.280633385565293E-4 0.0 0.01979381341459951 1.0701583463913232E-4 42-43 1.646397455986651E-4 4.445273131163958E-4 0.0 0.025268084955755128 1.1113182827909894E-4 44-45 1.7287173287859836E-4 5.144992049958284E-4 0.0 0.03132271160014603 1.1524782191906557E-4 46-47 1.811037201585316E-4 5.597751350354613E-4 0.0 0.038402220660888636 1.1524782191906557E-4 48-49 1.811037201585316E-4 5.638911286754279E-4 0.0 0.045638137479949964 1.1524782191906557E-4 50-51 1.811037201585316E-4 6.585589823946605E-4 0.0 0.05297283814637049 1.193638155590322E-4 52-53 1.811037201585316E-4 6.667909696745937E-4 0.0 0.05985477951239469 1.2347980919899884E-4 54-55 1.811037201585316E-4 6.667909696745937E-4 0.0 0.06684785270669799 1.2347980919899884E-4 56-57 1.811037201585316E-4 6.832549442344602E-4 0.0 0.07440070103603677 1.3994378375886533E-4 58-59 1.811037201585316E-4 7.038349124342932E-4 0.0 0.08180948958797668 1.481757710387986E-4 60-61 1.811037201585316E-4 7.202988869941598E-4 0.0 0.08925532208267631 1.481757710387986E-4 62-63 1.811037201585316E-4 7.28530874274093E-4 0.0 0.09600555165222159 1.5640775831873185E-4 64-65 1.811037201585316E-4 7.73806804313726E-4 0.0 0.10261172144436803 1.5640775831873185E-4 66-67 1.811037201585316E-4 7.779227979536926E-4 0.0 0.10939076296939307 1.5640775831873185E-4 68-69 1.811037201585316E-4 8.026187597934924E-4 0.0 0.11622742840537763 1.687557392386317E-4 70-71 1.811037201585316E-4 8.149667407133922E-4 0.0 0.12188691966033174 2.057996819983314E-4 72-73 1.811037201585316E-4 8.273147216332922E-4 0.0 0.12642274465157496 2.222636565581979E-4 74-75 1.811037201585316E-4 8.602426707530252E-4 0.0 0.13022180678126416 2.222636565581979E-4 76-77 1.811037201585316E-4 9.096345944326247E-4 0.0 0.13386446115263462 2.263796501981645E-4 78-79 1.811037201585316E-4 9.219825753525245E-4 0.0 0.13698438433172933 2.3049564383813113E-4 80-81 1.811037201585316E-4 9.219825753525245E-4 0.0 0.1383179662710785 2.469596183979977E-4 82-83 1.8521971379849823E-4 9.260985689924911E-4 0.0 0.13894359730435346 2.6753958659783076E-4 84-85 1.934517010784315E-4 9.384465499123911E-4 0.0 0.1395280684012287 2.716555802377974E-4 86-87 1.9756769471839813E-4 9.466785371923243E-4 0.0 0.13975856404506684 2.716555802377974E-4 88-89 1.9756769471839813E-4 9.796064863120573E-4 0.0 0.13986969587334594 2.7988756751773066E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21195 0.0 54.71745 1 GTATCAA 41375 0.0 38.398903 1 CTTATAC 10940 0.0 32.647636 1 TCAACGC 49655 0.0 31.605558 4 ATCAACG 49595 0.0 31.602474 3 TATCAAC 50985 0.0 30.922213 2 CAACGCA 50750 0.0 30.890507 5 AACGCAG 52085 0.0 30.146648 6 TGGTATC 8545 0.0 27.930998 2 GTGGTAT 9275 0.0 27.680723 1 ACGCAGA 58165 0.0 26.99541 7 CGCAGAG 59315 0.0 26.486187 8 TATACAC 17165 0.0 24.871391 3 GCAGAGT 67385 0.0 23.320444 9 TTATACA 17635 0.0 21.539873 2 GAGTACT 39360 0.0 21.482895 12-13 ACATCTC 17420 0.0 20.925112 8 ACACATC 17620 0.0 20.8306 6 GTACATG 48710 0.0 20.599958 1 TACATGG 47820 0.0 20.377052 2 >>END_MODULE