##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139706_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9768594 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.35929960852094 32.0 25.0 33.0 18.0 33.0 2 30.188625507416933 32.0 29.0 33.0 25.0 33.0 3 31.61441114248376 33.0 32.0 33.0 27.0 34.0 4 31.76359801625495 33.0 32.0 33.0 30.0 34.0 5 32.139675474280125 33.0 33.0 34.0 31.0 34.0 6 35.61387278455835 38.0 36.0 38.0 30.0 38.0 7 35.96447503090005 38.0 37.0 38.0 31.0 38.0 8 36.31503100650923 38.0 37.0 38.0 33.0 38.0 9 36.44547997388365 38.0 37.0 38.0 34.0 38.0 10-11 36.552934076285695 38.0 38.0 38.0 34.0 38.0 12-13 36.576016108357045 38.0 38.0 38.0 34.0 38.0 14-15 36.59883766282026 38.0 38.0 38.0 34.0 38.0 16-17 36.60161641480852 38.0 38.0 38.0 34.0 38.0 18-19 36.61426229813625 38.0 38.0 38.0 34.0 38.0 20-21 36.610108274582885 38.0 38.0 38.0 34.0 38.0 22-23 36.60747507024652 38.0 38.0 38.0 34.0 38.0 24-25 36.60847867753037 38.0 38.0 38.0 34.0 38.0 26-27 36.55550162976354 38.0 38.0 38.0 34.0 38.0 28-29 36.52719780232515 38.0 38.0 38.0 34.0 38.0 30-31 36.526430371771696 38.0 38.0 38.0 34.0 38.0 32-33 36.5037668010087 38.0 38.0 38.0 34.0 38.0 34-35 36.46245262790934 38.0 38.0 38.0 34.0 38.0 36-37 36.44326072468789 38.0 38.0 38.0 34.0 38.0 38-39 36.41504774851464 38.0 38.0 38.0 34.0 38.0 40-41 36.43325554791053 38.0 38.0 38.0 34.0 38.0 42-43 36.39049398621015 38.0 38.0 38.0 34.0 38.0 44-45 36.34012274407438 38.0 38.0 38.0 33.0 38.0 46-47 36.3013994306753 38.0 38.0 38.0 33.0 38.0 48-49 36.25427892557764 38.0 38.0 38.0 33.0 38.0 50-51 36.22694336606304 38.0 37.0 38.0 33.0 38.0 52-53 36.2068254702169 38.0 37.0 38.0 33.0 38.0 54-55 36.16833133129233 38.0 37.0 38.0 33.0 38.0 56-57 36.16685944628779 38.0 37.0 38.0 33.0 38.0 58-59 36.141230175750735 38.0 37.0 38.0 33.0 38.0 60-61 36.12645728899335 38.0 37.0 38.0 33.0 38.0 62-63 36.123843693746636 38.0 37.0 38.0 33.0 38.0 64-65 36.111042741283 38.0 37.0 38.0 33.0 38.0 66-67 36.11402930920195 38.0 37.0 38.0 33.0 38.0 68-69 36.096701548908925 38.0 37.0 38.0 33.0 38.0 70-71 36.066506189991514 38.0 37.0 38.0 32.5 38.0 72-73 36.03977000871687 38.0 37.0 38.0 31.5 38.0 74-75 36.058459896655876 38.0 37.0 38.0 32.5 38.0 76-77 36.03834331249584 38.0 37.0 38.0 31.5 38.0 78-79 36.02362015982011 38.0 37.0 38.0 31.0 38.0 80-81 35.982344526480375 38.0 37.0 38.0 31.0 38.0 82-83 35.985853640871014 38.0 37.0 38.0 31.0 38.0 84-85 35.98393826056292 38.0 37.0 38.0 31.0 38.0 86-87 35.98292552312479 38.0 37.0 38.0 31.0 38.0 88-89 35.956086023212976 38.0 37.0 38.0 31.0 38.0 90-91 35.937920627768634 38.0 37.0 38.0 31.0 38.0 92-93 35.88921553849296 38.0 37.0 38.0 31.0 38.0 94-95 35.88220184893828 38.0 37.0 38.0 31.0 38.0 96-97 35.90764312043251 38.0 37.0 38.0 31.0 38.0 98-99 35.939569547583424 38.0 37.0 38.0 31.0 38.0 100-101 35.413833884496796 38.0 36.0 38.0 29.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 16.0 19 51.0 20 119.0 21 529.0 22 2359.0 23 7296.0 24 17238.0 25 33120.0 26 54509.0 27 83691.0 28 117782.0 29 157288.0 30 201855.0 31 254592.0 32 319024.0 33 407891.0 34 547119.0 35 817722.0 36 1621631.0 37 5124761.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.115608039396456 23.06333951436614 14.545276423608147 24.275776022629255 2 15.035111501204778 21.284762167411195 41.27095465324898 22.40917167813505 3 18.138214237709143 26.82327803438449 30.22820042670684 24.810307301199522 4 13.037045044558102 18.899065720204973 38.39492152094764 29.668967714289284 5 13.553302154348879 37.21995195533038 35.76300257266567 13.463743317655075 6 29.257137721150045 38.55521070893109 18.636172206563195 13.551479363355668 7 25.8682672245361 33.08958279973556 23.010926649218916 18.031223326509423 8 23.60662138277013 37.72366831910508 21.05913092508502 17.610579373039766 9 24.922972538320252 17.429908541597698 21.451306093794052 36.195812826288 10-11 23.797959051220676 27.30125747881425 28.796078534945767 20.104704935019306 12-13 24.727320021694013 24.675255210729404 29.05933545810175 21.538089309474834 14-15 21.87460364046286 26.176364395568534 26.65804072295775 25.290991241010857 16-17 21.319726257432748 29.41071151078651 27.459509526140607 21.81005270564014 18-19 21.305220587527746 28.206423565151752 29.403479149609453 21.084876697711053 20-21 22.115976695778684 27.24477570900087 29.393678098849563 21.245569496370884 22-23 21.829839531881778 27.418793987757716 29.2365088682309 21.514857612129607 24-25 21.625052768866784 27.595898040361643 29.346211786662955 21.432837404108614 26-27 21.59223526664837 27.759879241202178 29.249205318630363 21.398680173519086 28-29 21.400313148978924 27.58216267847689 29.342944436340034 21.67457973620415 30-31 21.917360631030938 27.513232097626624 29.283079628834763 21.286327642507676 32-33 21.695622004673346 27.616428876120153 29.29818330433382 21.389765814872682 34-35 21.731560404427537 27.675669562142446 29.352047701160405 21.24072233226961 36-37 21.665513355958385 27.54136990564738 29.289900953142155 21.50321578525208 38-39 21.4747425187784 27.506896811473325 29.444923319288357 21.573437350459916 40-41 21.678964454905426 27.37418742460951 29.40560759900614 21.54124052147893 42-43 21.68345404079732 27.412941091217647 29.265150697466414 21.638454170518617 44-45 21.56731314171688 27.640111896928243 29.088397215854428 21.704177745500452 46-47 21.86952809388332 27.487716344731677 28.667083120390252 21.97567244099475 48-49 21.741109908196936 27.61557260977911 28.671255246188093 21.972062235835864 50-51 21.618140865401713 27.777183198808032 28.69699323952835 21.907682696261908 52-53 21.765463422840313 27.765531655278984 28.712757806768472 21.75624711511223 54-55 21.712551777168628 27.73020830353754 28.567609985682036 21.989629933611802 56-57 21.863072051116777 27.909260393292644 28.340899499248472 21.886768056342106 58-59 21.617545223977277 28.099896452671093 28.605994923028177 21.676563400323452 60-61 21.82762943466694 28.225666546389995 28.329040233844005 21.61766378509906 62-63 21.619472958653414 28.459501924350388 28.296369564833196 21.624655552163002 64-65 21.596343565482083 28.428606465691132 28.24114314005941 21.733906828767374 66-67 21.634184958147717 28.461213011844578 28.1284439263061 21.776158103701608 68-69 21.646741068790096 28.299497259829604 28.204916704046223 21.848844967334077 70-71 21.717889911917403 27.92620764742041 28.316615946748847 22.039286493913345 72-73 21.74519660180911 27.860160425332282 28.287206794948403 22.107436177910206 74-75 21.730248351066727 27.91468207390325 28.239316941774085 22.115752633255934 76-77 21.907491274439884 27.836304958896168 28.189888475935902 22.066315290728042 78-79 21.871348657085864 27.86748214540725 28.081764898277573 22.179404299229308 80-81 21.9058384687338 27.932503162665256 28.077330392766285 22.084327975834654 82-83 21.896508297315503 27.933383206828093 28.147499387240728 22.022609108615683 84-85 22.020317400965624 27.96608505664925 28.059804866716853 21.953792675668275 86-87 21.917043245802155 27.968426663472712 28.07766228476542 22.036867805959712 88-89 21.971369221136708 27.994188689621417 28.028191037581195 22.006251051660676 90-91 21.970914151881864 28.043847216890093 28.039556805762757 21.94568182546529 92-93 22.0252261647019 28.00883749490501 28.06051526909497 21.905421071298125 94-95 21.984074209662435 28.06769907037069 28.07979713283284 21.868429587134035 96-97 21.981231049861428 28.055800608575982 28.089384936522972 21.873583405039618 98-99 22.183119931656158 28.5501309262677 28.236059223388242 21.030689918687898 100-101 22.686754833938135 31.11562982258857 25.669159152881587 20.52845619059171 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2428.0 1 2331.0 2 2835.5 3 3577.5 4 4475.0 5 6297.0 6 7934.5 7 9983.0 8 12140.5 9 13246.5 10 13183.5 11 12807.5 12 13883.0 13 17444.0 14 25463.0 15 35559.5 16 43122.5 17 47100.0 18 47522.0 19 44814.5 20 40332.5 21 36270.5 22 34955.5 23 37977.5 24 45862.5 25 58536.0 26 74884.0 27 93876.0 28 115858.0 29 140034.5 30 165052.5 31 190823.0 32 217381.0 33 243962.5 34 269777.0 35 293918.0 36 319091.5 37 340924.5 38 357351.0 39 371517.0 40 383327.0 41 394501.5 42 401273.0 43 406555.0 44 413170.5 45 425891.0 46 431410.0 47 422882.5 48 414471.0 49 400481.0 50 384106.0 51 367178.5 52 345286.0 53 322601.5 54 299569.0 55 274606.0 56 248231.5 57 221226.0 58 194278.0 59 165363.5 60 135737.5 61 109490.0 62 85857.0 63 65164.0 64 48512.0 65 35739.0 66 26386.5 67 20029.5 68 15183.5 69 11258.0 70 8306.0 71 5885.0 72 4113.0 73 2847.0 74 1884.0 75 1196.0 76 741.5 77 431.5 78 282.5 79 186.5 80 108.0 81 63.5 82 45.5 83 38.5 84 29.5 85 23.0 86 18.0 87 12.0 88 6.5 89 3.0 90 2.0 91 2.0 92 2.5 93 2.5 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0030198818785999297 4 0.0 5 0.05302707841066995 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.0236887724067558E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.602147013969478E-4 28-29 2.458635506466621E-4 30-31 0.0 32-33 0.0 34-35 9.270513108994813E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.0698405841244002E-4 48-49 0.0 50-51 1.6314664191188285E-5 52-53 1.0952236148173022E-5 54-55 0.0011959510059105331 56-57 0.0022641103602859948 58-59 0.009021286547249575 60-61 0.008126751168347286 62-63 0.004415238334224337 64-65 0.005374798201539806 66-67 0.006941970162370947 68-69 0.003910743390814441 70-71 0.005697944738329276 72-73 0.0010630805098940247 74-75 0.0016630052432868212 76-77 0.0013379084125065975 78-79 0.0012038557041355086 80-81 1.0550481291234928E-4 82-83 0.0 84-85 0.0 86-87 2.6872159348833837E-4 88-89 9.635414662656697E-4 90-91 0.0 92-93 6.616872057683773E-6 94-95 1.1381672815336442E-4 96-97 4.139493886476484E-4 98-99 1.4012923699140006E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 512.0 22-23 1042.0 24-25 1367.0 26-27 2812.0 28-29 6080.0 30-31 17859.0 32-33 23437.0 34-35 32203.0 36-37 50128.0 38-39 56583.0 40-41 59365.0 42-43 67998.0 44-45 81121.0 46-47 81912.0 48-49 74944.0 50-51 66403.0 52-53 57394.0 54-55 61054.0 56-57 62895.0 58-59 72527.0 60-61 73850.0 62-63 71790.0 64-65 81558.0 66-67 88908.0 68-69 87670.0 70-71 96438.0 72-73 74033.0 74-75 74924.0 76-77 80163.0 78-79 84102.0 80-81 82994.0 82-83 79835.0 84-85 79500.0 86-87 81753.0 88-89 86322.0 90-91 88883.0 92-93 87499.0 94-95 93953.0 96-97 149864.0 98-99 811263.0 100-101 6435517.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.37977567358342 #Duplication Level Percentage of deduplicated Percentage of total 1 90.44453297076446 78.12578468916655 2 6.889663460486589 11.902551683666323 3 1.541063313902408 3.9935011006103722 4 0.5218086770060195 1.8029486585723724 5 0.2321216490680224 1.0025307987739014 6 0.12871483978737344 0.6671015392016728 7 0.06465068945443392 0.3909158436551556 8 0.04120308399743662 0.28472905222067124 9 0.02942136785402309 0.2287270039716444 >10 0.10402660669162912 1.372293740317624 >50 0.00229217325041856 0.1314510787066634 >100 4.4627616872769876E-4 0.06746694009399123 >500 5.489156851042613E-5 0.029997871043067538 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0236887724067558E-5 2 0.0 3.0710663172202675E-5 0.0 0.0 1.0236887724067558E-5 3 0.0 5.118443862033779E-5 0.0 0.0 1.0236887724067558E-5 4 0.0 1.1260576496474313E-4 0.0 0.0 2.0473775448135116E-5 5 0.0 1.1260576496474313E-4 0.0 1.0236887724067558E-5 2.0473775448135116E-5 6 1.0236887724067558E-5 1.1260576496474313E-4 0.0 1.0236887724067558E-5 5.118443862033779E-5 7 1.0236887724067558E-5 1.228426526888107E-4 0.0 1.0236887724067558E-5 5.118443862033779E-5 8 1.0236887724067558E-5 1.228426526888107E-4 0.0 1.0236887724067558E-5 6.142132634440535E-5 9 1.0236887724067558E-5 1.5355331586101335E-4 0.0 8.189510179254046E-5 6.142132634440535E-5 10-11 1.0236887724067558E-5 1.5355331586101335E-4 0.0 9.725043337864179E-5 6.142132634440535E-5 12-13 1.0236887724067558E-5 1.6379020358508092E-4 0.0 1.0748732110270936E-4 6.142132634440535E-5 14-15 1.0236887724067558E-5 2.508037492396552E-4 0.0 1.1260576496474313E-4 7.677665793050668E-5 16-17 2.5592219310168894E-5 2.610406369637227E-4 0.0 1.689086474471147E-4 8.189510179254046E-5 18-19 4.094755089627023E-5 2.815144124118578E-4 0.0 1.9961931061931738E-4 8.701354565457425E-5 20-21 4.094755089627023E-5 3.071066317220267E-4 0.0 2.0985619834338492E-4 9.213198951660802E-5 22-23 4.094755089627023E-5 3.429357387562632E-4 0.0 2.3544841765355383E-4 1.0236887724067557E-4 24-25 5.118443862033779E-5 3.9412017737660096E-4 0.0 2.7639596854982403E-4 1.1260576496474313E-4 26-27 5.118443862033779E-5 4.1971239668676984E-4 0.0 3.7364640192846587E-4 1.1260576496474313E-4 28-29 5.118443862033779E-5 4.1971239668676984E-4 0.0 6.858714775125264E-4 1.1260576496474313E-4 30-31 6.653977020643913E-5 4.40186172134905E-4 0.0 0.0020013115500552075 1.1260576496474313E-4 32-33 7.16582140684729E-5 4.606599475830401E-4 0.0 0.004668020802174806 1.3307954041287824E-4 34-35 8.189510179254046E-5 5.016074984793104E-4 0.0 0.00861434101980285 1.3307954041287824E-4 36-37 9.213198951660802E-5 5.425550493755806E-4 0.0 0.014782065873553553 1.433164281369458E-4 38-39 9.213198951660802E-5 5.527919370996482E-4 0.0 0.026887185607263442 1.433164281369458E-4 40-41 1.0236887724067557E-4 6.346870388921886E-4 0.0 0.06815208002297976 1.433164281369458E-4 42-43 1.0236887724067557E-4 6.602792582023574E-4 0.0 0.07954573605986695 1.4843487199897958E-4 44-45 1.0236887724067557E-4 7.472928038569317E-4 0.0 0.0969023791960235 1.5355331586101335E-4 46-47 1.0236887724067557E-4 7.984772424772695E-4 0.0 0.11665445405961186 1.6379020358508092E-4 48-49 1.0236887724067557E-4 7.984772424772695E-4 0.0 0.13454341535741993 1.740270913091485E-4 50-51 1.0236887724067557E-4 8.957276758559113E-4 0.0 0.15226858645164287 1.945008667572836E-4 52-53 1.0236887724067557E-4 9.00846119717945E-4 0.0 0.18437658479818078 2.1497464220541872E-4 54-55 1.0236887724067557E-4 9.26438339028114E-4 0.0 0.26819622148284594 2.3544841765355383E-4 56-57 1.0236887724067557E-4 9.622674460623504E-4 0.0 0.3621810876775102 2.456853053776214E-4 58-59 1.0236887724067557E-4 9.72504333786418E-4 0.0 0.46265102224537125 2.5592219310168894E-4 60-61 1.0236887724067557E-4 0.0010032149969586206 0.0 0.48519776745763005 2.610406369637227E-4 62-63 1.0236887724067557E-4 0.0010339256601308235 0.0 0.4991148163184999 2.763959685498241E-4 64-65 1.0236887724067557E-4 0.0011772420882677692 0.0 0.5096895213374617 2.763959685498241E-4 66-67 1.0236887724067557E-4 0.0011925974198538705 0.0 0.5158418908596263 2.815144124118579E-4 68-69 1.0236887724067557E-4 0.0012130711953020055 0.0 0.5220608001519973 2.866328562738916E-4 70-71 1.1260576496474313E-4 0.0012284265268881068 0.0 0.5278292863845093 2.9686974399795917E-4 72-73 1.1260576496474313E-4 0.0012335449707501407 0.0 0.5317756066021374 3.071066317220267E-4 74-75 1.1260576496474313E-4 0.0012591371900603095 0.0 0.5353124513108027 3.071066317220267E-4 76-77 1.1260576496474313E-4 0.0013256769602667487 0.0 0.5383630438525748 3.173435194460943E-4 78-79 1.1260576496474313E-4 0.0013615060673009853 0.0 0.541249846190762 3.2758040717016185E-4 80-81 1.1260576496474313E-4 0.0013615060673009853 0.0 0.5425141018246843 3.2758040717016185E-4 82-83 1.1260576496474313E-4 0.0013615060673009853 0.0 0.5431743810828866 3.5317262648033073E-4 84-85 1.1260576496474313E-4 0.0013717429550250528 0.0 0.5435889750357115 3.5829107034236453E-4 86-87 1.1260576496474313E-4 0.0013717429550250528 0.0 0.5437374099077104 3.6340951420439833E-4 88-89 1.1260576496474313E-4 0.0014229273936453904 0.0 0.5437732390147446 3.685279580664321E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14135 0.0 51.60582 1 GTATCAA 24725 0.0 35.263294 1 TCAACGC 30275 0.0 29.25461 4 ATCAACG 30325 0.0 29.178358 3 TATCAAC 31265 0.0 28.49437 2 CAACGCA 31315 0.0 28.296824 5 AACGCAG 32345 0.0 27.46075 6 GTGGTAT 6440 0.0 24.731375 1 TGGTATC 6360 0.0 24.160208 2 ACGCAGA 37385 0.0 23.747133 7 CGCAGAG 37760 0.0 23.48845 8 CTTATAC 12995 0.0 22.054619 1 GAGTACT 26125 0.0 20.334866 12-13 GCAGAGT 43970 0.0 20.269222 9 CAGAGTA 43320 0.0 19.019896 10-11 TATACAC 17260 0.0 19.005558 3 GTACTTT 28665 0.0 18.42803 14-15 TACATGG 29995 0.0 17.829132 2 GTACATG 29595 0.0 17.77842 1 TTATACA 17110 0.0 17.60813 2 >>END_MODULE