##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139705_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11108435 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.114531885004503 32.0 25.0 33.0 18.0 33.0 2 30.071300232661038 32.0 28.0 33.0 25.0 33.0 3 31.559015288832317 33.0 32.0 33.0 27.0 34.0 4 31.727887321661424 33.0 32.0 33.0 30.0 34.0 5 32.10986047989658 33.0 33.0 34.0 31.0 34.0 6 35.58627385405775 38.0 36.0 38.0 30.0 38.0 7 35.972026662621694 38.0 37.0 38.0 31.0 38.0 8 36.313395181229396 38.0 37.0 38.0 33.0 38.0 9 36.450642687291236 38.0 37.0 38.0 34.0 38.0 10-11 36.55876111261397 38.0 38.0 38.0 34.0 38.0 12-13 36.5790937247236 38.0 38.0 38.0 34.0 38.0 14-15 36.60099991582973 38.0 38.0 38.0 34.0 38.0 16-17 36.59938726742336 38.0 38.0 38.0 34.0 38.0 18-19 36.60925665946643 38.0 38.0 38.0 34.0 38.0 20-21 36.60096173538607 38.0 38.0 38.0 34.0 38.0 22-23 36.59738821318713 38.0 38.0 38.0 34.0 38.0 24-25 36.596989877672996 38.0 38.0 38.0 34.0 38.0 26-27 36.542113544782595 38.0 38.0 38.0 34.0 38.0 28-29 36.51573031164535 38.0 38.0 38.0 34.0 38.0 30-31 36.51814257440825 38.0 38.0 38.0 34.0 38.0 32-33 36.50267916202421 38.0 38.0 38.0 34.0 38.0 34-35 36.46932125234075 38.0 38.0 38.0 34.0 38.0 36-37 36.45009936260476 38.0 38.0 38.0 34.0 38.0 38-39 36.43660304413402 38.0 38.0 38.0 34.0 38.0 40-41 36.43077458095823 38.0 38.0 38.0 34.0 38.0 42-43 36.379214910886986 38.0 38.0 38.0 33.5 38.0 44-45 36.33211799495786 38.0 38.0 38.0 33.0 38.0 46-47 36.295712700458665 38.0 38.0 38.0 33.0 38.0 48-49 36.250813659605186 38.0 37.5 38.0 33.0 38.0 50-51 36.22344605930273 38.0 37.0 38.0 33.0 38.0 52-53 36.2028865776181 38.0 37.0 38.0 33.0 38.0 54-55 36.166037614532705 38.0 37.0 38.0 33.0 38.0 56-57 36.16234601247592 38.0 37.0 38.0 33.0 38.0 58-59 36.13807205871461 38.0 37.0 38.0 33.0 38.0 60-61 36.121766654564325 38.0 37.0 38.0 33.0 38.0 62-63 36.11878115769785 38.0 37.0 38.0 33.0 38.0 64-65 36.107190441030276 38.0 37.0 38.0 33.0 38.0 66-67 36.10987286143617 38.0 37.0 38.0 33.0 38.0 68-69 36.094012635987646 38.0 37.0 38.0 33.0 38.0 70-71 36.062687177344756 38.0 37.0 38.0 32.5 38.0 72-73 36.03376240261689 38.0 37.0 38.0 31.5 38.0 74-75 36.05173081502974 38.0 37.0 38.0 32.0 38.0 76-77 36.030501112051695 38.0 37.0 38.0 31.5 38.0 78-79 36.01301938798801 38.0 37.0 38.0 31.0 38.0 80-81 35.97249916448601 38.0 37.0 38.0 31.0 38.0 82-83 35.971926413556005 38.0 37.0 38.0 31.0 38.0 84-85 35.96689630238887 38.0 37.0 38.0 31.0 38.0 86-87 35.960411554977014 38.0 37.0 38.0 31.0 38.0 88-89 35.93374141718084 38.0 37.0 38.0 31.0 38.0 90-91 35.916208865174426 38.0 37.0 38.0 31.0 38.0 92-93 35.86592632801268 38.0 37.0 38.0 31.0 38.0 94-95 35.85776305412956 38.0 37.0 38.0 31.0 38.0 96-97 35.8866107418037 38.0 37.0 38.0 31.0 38.0 98-99 35.91344319990674 38.0 37.0 38.0 31.0 38.0 100-101 35.39273348755556 38.0 35.5 38.0 29.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 10.0 19 26.0 20 105.0 21 659.0 22 2787.0 23 8712.0 24 20127.0 25 37572.0 26 63003.0 27 94791.0 28 133847.0 29 178393.0 30 228845.0 31 288359.0 32 363631.0 33 466243.0 34 626945.0 35 936236.0 36 1871123.0 37 5787020.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.1385316653516 23.03792568440109 14.536917216511597 24.286625433735715 2 15.291352922351347 21.20598446135752 40.82877561060582 22.67388700568532 3 18.331285579866528 26.5730401612948 29.929111240185996 25.16656301865268 4 13.286200981506397 18.61246881311364 38.17835725734543 29.92297294803453 5 13.898651101807799 37.00859896364974 35.44918283680325 13.64356709773921 6 29.796108074279417 38.293093337908836 18.39312363920963 13.517674948602115 7 26.278544187367526 32.94271425272777 22.88911084234638 17.889630717558326 8 23.96765160889 37.5405716466811 20.771521821030596 17.7202549233983 9 25.097423714501637 17.524268720121242 21.32127522913894 36.05703233623818 10-11 24.143792532431434 27.155193328313125 28.56230423097403 20.13870990828141 12-13 24.942410879660365 24.549560761709458 28.846907777738267 21.661120580891907 14-15 22.12260171517433 25.94757847719933 26.51808646106582 25.41173334656052 16-17 21.60541516424231 29.079388770785442 27.300483821528417 22.014712243443835 18-19 21.595143690357823 28.07359902632549 29.152877970659237 21.17837931265745 20-21 22.430720539161257 27.151442358005895 29.1079535585213 21.309883544311546 22-23 22.1462089666052 27.11724991036456 28.96846880607842 21.768072316951823 24-25 21.918300412901754 27.26555728770963 29.051313698905684 21.764828600482936 26-27 21.788854700639185 27.41832886924897 28.988647935148038 21.804168494963804 28-29 21.708153811650728 27.357849974773536 29.09191535673813 21.842080856837605 30-31 21.992484465718228 27.20598793740021 29.01197400829261 21.789553588588948 32-33 21.81826534370667 27.372380944035047 28.94364513127046 21.865708580987814 34-35 21.953110080046184 27.42099371791895 28.965571304724342 21.660324897310527 36-37 21.940386662848766 27.310474694418357 28.905846592149125 21.843292050583752 38-39 21.797066370072244 27.385871271413336 29.018295556002098 21.798766802512326 40-41 22.01724273810289 27.27937600161997 28.904792501263763 21.798588759013374 42-43 21.9853839320608 27.342457216643055 28.741347569666193 21.93081128162995 44-45 21.99953613756435 27.44274037805954 28.59811214981591 21.9596113345602 46-47 22.1308296392598 27.407773241064255 28.30045908832372 22.160938031352227 48-49 22.019197295983975 27.53184607583402 28.317393915214684 22.13156271296732 50-51 21.98089335686377 27.66145209990794 28.24724373969536 22.11041080353293 52-53 22.153562362755288 27.60837753610611 28.16698294740922 22.071077153729384 54-55 22.09118220152178 27.550980599973933 28.160881522513844 22.19695567599044 56-57 22.11871320912219 27.650677610518915 28.08189473457059 22.148714445788304 58-59 22.02193373004329 27.70094148383023 28.196811708301432 22.080313077825043 60-61 22.13789961522805 27.728239272732107 28.1316977061409 22.002163405898937 62-63 22.020557968864555 27.85058654935296 28.09980632797307 22.029049153809414 64-65 22.007167125161814 27.810463329160797 28.067798394430056 22.114571151247333 66-67 22.055796999146573 27.880973185134877 27.89933392093793 22.163895894780623 68-69 22.004295682461592 27.800487816529206 27.993641999580344 22.201574501428855 70-71 22.071439585930623 27.530340950575543 28.043449972116857 22.35476949137698 72-73 22.083098849116627 27.554285486190484 27.985024021503452 22.377591643189433 74-75 21.970025657859267 27.61363408107968 28.001266506608985 22.415073754452067 76-77 22.16195969711575 27.534896706942796 27.939564884586964 22.36357871135449 78-79 22.129531611352554 27.597646957607914 27.845860500388063 22.426960930651468 80-81 22.14534713319403 27.647084679661095 27.807895080418543 22.39967310672633 82-83 22.15826150940555 27.613238001591405 27.88477119897558 22.343729290027465 84-85 22.25672943468745 27.61631101087208 27.818922489724017 22.308037064716455 86-87 22.172380083753445 27.650318209269898 27.85097341061534 22.32632829636132 88-89 22.169386601046277 27.63267579455797 27.835882002591983 22.362055601803764 90-91 22.162371320769374 27.649768049425326 27.905723021944244 22.282137607861056 92-93 22.200893392111364 27.59587028109809 27.889440647602587 22.313795679187958 94-95 22.089217791354187 27.669158854638166 27.910549785143594 22.331073568864053 96-97 22.119733309838367 27.700508110506444 27.90388593375767 22.275872645897522 98-99 22.380330046068217 28.316245445896932 27.929085832017574 21.374338676017278 100-101 22.944399100629088 30.777895784186793 25.307303542228553 20.970401572955566 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3311.0 1 3089.0 2 3287.5 3 3875.5 4 4691.0 5 6488.5 6 8324.0 7 10746.5 8 13314.0 9 14602.0 10 14391.5 11 13860.0 12 14988.5 13 18396.0 14 26261.5 15 36198.5 16 43673.5 17 47776.0 18 48284.5 19 45516.0 20 41556.0 21 38303.0 22 37560.5 23 41592.0 24 50670.0 25 65133.0 26 84167.0 27 105523.5 28 128409.5 29 153576.0 30 179018.5 31 204623.5 32 232864.0 33 261904.0 34 289867.0 35 315763.0 36 343765.5 37 369743.5 38 388480.5 39 403944.0 40 420036.0 41 435561.5 42 445511.5 43 453823.5 44 466324.0 45 474604.0 46 472877.5 47 468881.0 48 463177.0 49 454474.0 50 444430.0 51 430900.5 52 411345.0 53 388843.0 54 365890.0 55 339109.0 56 309530.5 57 278377.0 58 246683.5 59 213769.5 60 178110.5 61 144200.5 62 113617.5 63 86985.0 64 65315.5 65 48398.5 66 35611.0 67 26694.5 68 20094.5 69 14648.5 70 10530.5 71 7566.5 72 5372.0 73 3667.5 74 2407.0 75 1577.0 76 1026.0 77 606.5 78 385.0 79 270.0 80 170.5 81 105.5 82 69.5 83 45.0 84 27.0 85 17.5 86 14.0 87 11.5 88 7.5 89 4.5 90 3.5 91 2.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.002943708992310798 4 0.0 5 0.05237461442588447 6 9.002168172204276E-6 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.3503252258306413E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.960358025288382E-4 28-29 2.567457698882255E-4 30-31 0.0 32-33 0.0 34-35 6.340180290272475E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 9.323867183936171E-6 46-47 1.0815122117540723E-4 48-49 0.0 50-51 4.301315566924623E-5 52-53 3.3692960765557974E-5 54-55 0.001095232448306361 56-57 0.0022750623628280194 58-59 0.008963225832508793 60-61 0.007911490902355883 62-63 0.0042754138600616534 64-65 0.005107014128481485 66-67 0.006832026464513296 68-69 0.003744392271779805 70-71 0.005515100245896685 72-73 0.0010214790324927765 74-75 0.0016174655836624558 76-77 0.0011899980186266174 78-79 0.0011427848178233895 80-81 5.9914420420577444E-5 82-83 0.0 84-85 0.0 86-87 3.5958577292147204E-4 88-89 9.656646570427769E-4 90-91 0.0 92-93 1.162862024385798E-5 94-95 1.2356677254181557E-4 96-97 3.042247149295117E-4 98-99 1.2324623686102681E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 545.0 22-23 1209.0 24-25 1506.0 26-27 3166.0 28-29 6950.0 30-31 19976.0 32-33 26181.0 34-35 36353.0 36-37 57201.0 38-39 64659.0 40-41 66842.0 42-43 76484.0 44-45 90797.0 46-47 91066.0 48-49 84071.0 50-51 76409.0 52-53 69270.0 54-55 74752.0 56-57 76754.0 58-59 82516.0 60-61 82994.0 62-63 79894.0 64-65 87372.0 66-67 93332.0 68-69 95032.0 70-71 96710.0 72-73 85466.0 74-75 87870.0 76-77 93582.0 78-79 95178.0 80-81 96961.0 82-83 92574.0 84-85 91955.0 86-87 95897.0 88-89 99612.0 90-91 102785.0 92-93 101098.0 94-95 108448.0 96-97 173094.0 98-99 931697.0 100-101 7310054.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.19816196841253 #Duplication Level Percentage of deduplicated Percentage of total 1 89.86224424058378 76.56098039654303 2 7.088331651423685 12.078256562476405 3 1.6801848843326341 4.294459917367507 4 0.6443983586406915 2.1960622292659533 5 0.29448236794875576 1.2544678240669875 6 0.1449735051380404 0.741088570312755 7 0.079211564379382 0.4724075784236147 8 0.05830759720130964 0.39741600882769085 9 0.032422716489547844 0.24861202658391754 >10 0.11233334745179788 1.4808470174150032 >50 0.002302555907963425 0.13216486433072946 >100 7.557797487704321E-4 0.09971114123849324 >500 1.714380296398367E-5 0.010706348277314632 >1k 3.428695070280995E-5 0.03281951487057552 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.002168172204276E-6 2 0.0 1.800433634440855E-5 0.0 0.0 9.002168172204276E-6 3 0.0 1.800433634440855E-5 0.0 0.0 9.002168172204276E-6 4 0.0 2.7006504516612825E-5 0.0 9.002168172204276E-6 9.002168172204276E-6 5 0.0 4.501084086102138E-5 0.0 9.002168172204276E-6 9.002168172204276E-6 6 0.0 4.501084086102138E-5 0.0 9.002168172204276E-6 9.002168172204276E-6 7 0.0 4.501084086102138E-5 0.0 9.002168172204276E-6 1.800433634440855E-5 8 0.0 4.501084086102138E-5 0.0 9.002168172204276E-6 1.800433634440855E-5 9 0.0 8.101951354983848E-5 0.0 4.501084086102138E-5 1.800433634440855E-5 10-11 0.0 8.101951354983848E-5 0.0 5.851409311932779E-5 1.800433634440855E-5 12-13 0.0 8.101951354983848E-5 0.0 7.20173453776342E-5 3.1507588602714964E-5 14-15 0.0 1.2152927032475772E-4 0.0 8.101951354983848E-5 4.501084086102138E-5 16-17 0.0 1.2603035441085986E-4 0.0 9.902384989424702E-5 4.501084086102138E-5 18-19 0.0 1.4853577484137055E-4 0.0 1.3503252258306413E-4 5.401300903322565E-5 20-21 0.0 1.8004336344408552E-4 0.0 1.6654011118577908E-4 5.401300903322565E-5 22-23 0.0 2.2055312021900474E-4 0.0 2.025487838745962E-4 6.751626129153207E-5 24-25 0.0 2.385574565634133E-4 0.0 2.520607088217197E-4 8.101951354983848E-5 26-27 0.0 2.4305854064951543E-4 0.0 3.510845587159667E-4 8.101951354983848E-5 28-29 0.0 2.520607088217197E-4 0.0 6.931669492597292E-4 8.101951354983848E-5 30-31 0.0 2.880693815105368E-4 0.0 0.001993980250143247 8.552059763594062E-5 32-33 0.0 2.970715496827411E-4 0.0 0.0051672445308452546 9.902384989424702E-5 34-35 0.0 3.2857913828545607E-4 0.0 0.00960081235565586 1.1702818623865558E-4 36-37 0.0 3.5108455871596676E-4 0.0 0.015969846337490386 1.1702818623865558E-4 38-39 0.0 3.6008672688817104E-4 0.0 0.027447610757050836 1.1702818623865558E-4 40-41 0.0 4.050975677491924E-4 0.0 0.05815850747652572 1.1702818623865558E-4 42-43 0.0 4.095986518352945E-4 0.0 0.06874505724703794 1.1702818623865558E-4 44-45 0.0 4.5911057678241804E-4 0.0 0.08390020736494384 1.1702818623865558E-4 46-47 0.0 4.996203335573372E-4 0.0 0.10046419680179972 1.2603035441085986E-4 48-49 0.0 5.041214176434394E-4 0.0 0.11623599543950161 1.2603035441085986E-4 50-51 0.0 5.581344266766651E-4 0.0 0.13213832551570046 1.3503252258306413E-4 52-53 0.0 5.581344266766651E-4 0.0 0.15675475438259304 1.3503252258306413E-4 54-55 0.0 5.761387630210736E-4 0.0 0.21213609297799374 1.3503252258306413E-4 56-57 0.0 5.941430993654822E-4 0.0 0.27338684522167167 1.3953360666916627E-4 58-59 0.0 6.16648519795993E-4 0.0 0.3408986054291176 1.4853577484137055E-4 60-61 0.0 6.256506879681971E-4 0.0 0.36414670473383515 1.530368589274727E-4 62-63 0.0 6.391539402265036E-4 0.0 0.3756649789101705 1.530368589274727E-4 64-65 0.0 6.661604447431164E-4 0.0 0.38664312299617365 1.530368589274727E-4 66-67 0.0 6.751626129153207E-4 0.0 0.3932552155186577 1.530368589274727E-4 68-69 0.0 6.931669492597292E-4 0.0 0.39948021480973694 1.530368589274727E-4 70-71 0.0 7.111712856041378E-4 0.0 0.40537663496253074 1.530368589274727E-4 72-73 0.0 7.201734537763421E-4 0.0 0.4097471876101359 1.7104119527188124E-4 74-75 0.0 7.336767060346484E-4 0.0 0.41335705704718984 1.7104119527188124E-4 76-77 0.0 7.561821264651591E-4 0.0 0.4165933365050972 1.7104119527188124E-4 78-79 0.0 7.741864628095676E-4 0.0 0.4196450715154745 1.7104119527188124E-4 80-81 0.0 7.831886309817719E-4 0.0 0.42104940975033833 1.7554227935798338E-4 82-83 0.0 7.966918832400783E-4 0.0 0.4215805376724984 1.8904553161628977E-4 84-85 0.0 8.011929673261805E-4 0.0 0.4220261449970225 1.8904553161628977E-4 86-87 0.0 8.101951354983847E-4 0.0 0.4221836829400361 1.8904553161628977E-4 88-89 0.0 8.552059763594061E-4 0.0 0.4222466981172415 1.8904553161628977E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15375 0.0 50.0795 1 GTATCAA 27125 0.0 35.593975 1 TCAACGC 32990 0.0 29.657452 4 ATCAACG 33240 0.0 29.44844 3 TATCAAC 34305 0.0 28.672606 2 CAACGCA 34300 0.0 28.537344 5 AACGCAG 35595 0.0 27.557964 6 ACGCAGA 40900 0.0 24.004604 7 CGCAGAG 41480 0.0 23.762552 8 GTGGTAT 7385 0.0 23.026398 1 TGGTATC 7390 0.0 22.426786 2 GCAGAGT 48450 0.0 20.344082 9 GAGTACT 27970 0.0 19.840971 12-13 CAGAGTA 47705 0.0 18.699598 10-11 GTACTTT 30940 0.0 17.908792 14-15 AGAGTAC 44030 0.0 17.899277 10-11 TACATGG 33405 0.0 16.822083 2 GTACATG 33185 0.0 16.816551 1 ACATGGG 33940 0.0 15.921088 3 AGTACTT 30500 0.0 15.847386 12-13 >>END_MODULE