##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139704_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10831532 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.88162800977738 31.0 18.0 33.0 18.0 33.0 2 30.031935740945972 32.0 28.0 33.0 25.0 33.0 3 31.564043018106766 33.0 32.0 33.0 27.0 34.0 4 31.747072897905856 33.0 32.0 33.0 30.0 34.0 5 32.150085971218104 33.0 33.0 34.0 31.0 34.0 6 35.63618895277233 38.0 36.0 38.0 30.0 38.0 7 35.99799557440259 38.0 37.0 38.0 31.0 38.0 8 36.3463244165276 38.0 37.0 38.0 33.0 38.0 9 36.473018405891246 38.0 38.0 38.0 34.0 38.0 10-11 36.578152241068025 38.0 38.0 38.0 34.0 38.0 12-13 36.596486304984374 38.0 38.0 38.0 34.0 38.0 14-15 36.619476496953524 38.0 38.0 38.0 34.0 38.0 16-17 36.62344781883117 38.0 38.0 38.0 34.0 38.0 18-19 36.638944010874916 38.0 38.0 38.0 34.0 38.0 20-21 36.63278862165362 38.0 38.0 38.0 34.0 38.0 22-23 36.629963364994154 38.0 38.0 38.0 34.0 38.0 24-25 36.62873939013127 38.0 38.0 38.0 34.0 38.0 26-27 36.57613296951425 38.0 38.0 38.0 34.0 38.0 28-29 36.55141582536814 38.0 38.0 38.0 34.0 38.0 30-31 36.55004210577356 38.0 38.0 38.0 34.0 38.0 32-33 36.5231175230711 38.0 38.0 38.0 34.0 38.0 34-35 36.47704474170315 38.0 38.0 38.0 34.0 38.0 36-37 36.453749897484556 38.0 38.0 38.0 34.0 38.0 38-39 36.41687883468982 38.0 38.0 38.0 34.0 38.0 40-41 36.44085795248541 38.0 38.0 38.0 34.0 38.0 42-43 36.3918099999332 38.0 38.0 38.0 34.0 38.0 44-45 36.33407640551617 38.0 38.0 38.0 33.0 38.0 46-47 36.28883965649011 38.0 38.0 38.0 33.0 38.0 48-49 36.236226094497226 38.0 38.0 38.0 33.0 38.0 50-51 36.21001035848899 38.0 37.0 38.0 33.0 38.0 52-53 36.19498823789105 38.0 37.5 38.0 33.0 38.0 54-55 36.16177585923734 38.0 37.0 38.0 33.0 38.0 56-57 36.1682783893302 38.0 37.0 38.0 33.0 38.0 58-59 36.14778781275429 38.0 37.0 38.0 33.0 38.0 60-61 36.13703473857753 38.0 37.0 38.0 33.0 38.0 62-63 36.1396032745956 38.0 37.0 38.0 33.0 38.0 64-65 36.132236897294746 38.0 37.0 38.0 33.0 38.0 66-67 36.13455419663977 38.0 37.0 38.0 33.0 38.0 68-69 36.11821998761407 38.0 37.0 38.0 33.0 38.0 70-71 36.092799049520764 38.0 37.0 38.0 33.0 38.0 72-73 36.06729353994488 38.0 37.0 38.0 32.5 38.0 74-75 36.08917514356108 38.0 37.0 38.0 33.0 38.0 76-77 36.07446067341628 38.0 37.0 38.0 33.0 38.0 78-79 36.06526159802729 38.0 37.0 38.0 33.0 38.0 80-81 36.02961781446426 38.0 37.0 38.0 31.5 38.0 82-83 36.03838605818575 38.0 37.0 38.0 32.0 38.0 84-85 36.036864695597 38.0 37.0 38.0 32.0 38.0 86-87 36.03547402865596 38.0 37.0 38.0 32.0 38.0 88-89 36.01327840420243 38.0 37.0 38.0 31.5 38.0 90-91 35.996327462621316 38.0 37.0 38.0 31.0 38.0 92-93 35.950342677580885 38.0 37.0 38.0 31.0 38.0 94-95 35.94580781285626 38.0 37.0 38.0 31.0 38.0 96-97 35.97801000485043 38.0 37.0 38.0 31.0 38.0 98-99 36.008807667864744 38.0 37.0 38.0 32.0 38.0 100-101 35.47745842371623 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 38.0 19 90.0 20 215.0 21 652.0 22 2762.0 23 8004.0 24 18493.0 25 35828.0 26 59763.0 27 91285.0 28 130329.0 29 174988.0 30 223495.0 31 280660.0 32 351074.0 33 449222.0 34 604002.0 35 901594.0 36 1815916.0 37 5683115.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.51785989276494 24.00713952559989 14.83622076729312 23.638779814342055 2 14.72669794078991 21.733112176560066 41.77071165925559 21.769478223394437 3 17.628329679531834 27.63035623525958 30.89422810154198 23.84708598366661 4 12.62243420413659 19.478685009655145 39.26876641272906 28.63011437347921 5 12.935750817113606 37.79219709157067 36.27026526725878 13.00178682405695 6 28.12998198223483 39.618596889156585 18.931984875269723 13.319436253338862 7 24.979827414995405 33.88317552863251 23.490425915743035 17.646571140629046 8 23.237894694859413 38.066868103237844 21.389088819568645 17.306148382334097 9 24.596631390647232 17.60503500335871 21.842007206367484 35.95632639962657 10-11 23.240558214664368 27.819088749403132 29.267941967950613 19.672411067981887 12-13 24.387565858643082 25.19957010698025 29.53085491507573 20.882009119300946 14-15 21.51170305364006 26.659986786726016 27.34275723877287 24.485552920861057 16-17 20.657197892227988 29.95480233082449 28.054470964956757 21.333528811990767 18-19 20.632030630570082 28.609457092496243 30.304360454273688 20.454151822659988 20-21 21.46792255253531 27.59289126571762 30.3889748901303 20.550211291616776 22-23 21.167187378380184 27.676397729384846 30.273243690958267 20.883171201276706 24-25 20.974382062979206 27.930583886876253 30.37666929188138 20.718364758263156 26-27 20.984244263014766 28.032882156493706 30.306317063805917 20.67655651668561 28-29 20.758685756634332 27.882295268598213 30.513244635335905 20.845774339431554 30-31 21.265274034027676 27.841291442267146 30.26098807004054 20.632446453664638 32-33 21.016477372771387 27.827210684015064 30.27173753594841 20.884574407265134 34-35 20.88469742606638 28.105529902686 30.46822394601904 20.54154872522858 36-37 21.05302452433304 27.906768608782777 30.268714449478836 20.771492417405344 38-39 20.797838158712125 27.920792060620318 30.370144497596335 20.91122528307122 40-41 21.036183128963966 27.8221094577302 30.308073314472345 20.833634098833496 42-43 21.162038385014224 27.831798679141244 30.042169658563022 20.96399327728151 44-45 20.989139538207773 28.115637021418994 29.870151353514473 21.025072086858763 46-47 21.300521812126338 27.934014666031914 29.462405539769566 21.303057982072183 48-49 21.141915257579296 28.09490319618248 29.41068039489043 21.352501151347784 50-51 21.012799828770234 28.219722144640986 29.451682085701464 21.315795940887316 52-53 21.216183303506067 28.15520109982421 29.494713666181276 21.13390193048844 54-55 21.1415657736563 28.153058549553595 29.330700462793963 21.37467521399615 56-57 21.375864631889623 28.351049947414168 28.991641408701412 21.28144401199479 58-59 21.050628864914042 28.659559607250497 29.3154382871041 20.97437324073136 60-61 21.314169801052135 28.85447900300089 28.939210967416745 20.892140228530227 62-63 21.051844701631794 29.065346417133174 28.91771114563068 20.965097735604346 64-65 21.006970135632788 29.003974636494345 28.9373622191889 21.051693008683962 66-67 21.149623098653915 28.975069751000852 28.78848075479067 21.08682639555456 68-69 21.124379491816825 28.78696830443428 28.94575258311334 21.142899620635554 70-71 21.191170622161398 28.358352181231204 29.076478777142174 21.373998419465224 72-73 21.241203020723376 28.361677990330175 29.06133996364037 21.33577902530608 74-75 21.173584531813844 28.42280965240959 29.012986878756404 21.390618937020164 76-77 21.26095463287514 28.35796373849309 28.958967826446536 21.422113802185237 78-79 21.25562270109124 28.410944584625103 28.926035844542476 21.40739686974118 80-81 21.315068173283365 28.408321281283893 28.87104290098866 21.405567644444083 82-83 21.36357975046895 28.398637134085845 28.954289382824918 21.283493732620293 84-85 21.486439996163185 28.379679528550856 28.81049361272476 21.323386862561208 86-87 21.2772831882325 28.45359093850072 28.88487445199621 21.384251421270562 88-89 21.371213786082297 28.454191569920233 28.78199612708623 21.39259851691124 90-91 21.419663111818377 28.425035332532772 28.856554555136256 21.298747000512595 92-93 21.471791484920345 28.40542980965939 28.78628546536588 21.336493240054384 94-95 21.304928674385017 28.553277095430357 28.73799794185189 21.40379628833273 96-97 21.32165653976126 28.56036504334181 28.811254044827823 21.306724372069105 98-99 21.543052670107198 29.09779997961579 28.83463213231019 20.524515217966822 100-101 22.02197009869268 31.666369453286514 26.34600018938879 19.965660258632013 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3316.0 1 3194.5 2 4070.5 3 5292.0 4 6446.5 5 8942.0 6 11423.5 7 15156.5 8 19346.0 9 21147.5 10 20185.0 11 18763.0 12 19933.0 13 24612.5 14 35629.0 15 49411.5 16 59432.5 17 64530.0 18 65302.5 19 62127.0 20 56895.0 21 52394.0 22 51851.5 23 57666.0 24 69746.5 25 88464.5 26 112822.0 27 139035.5 28 165528.0 29 192990.5 30 218715.5 31 244271.5 32 272742.0 33 302697.0 34 330750.5 35 355521.0 36 382919.5 37 406124.5 38 419462.0 39 429478.0 40 439342.5 41 446817.5 42 448631.5 43 454321.0 44 475440.5 45 484161.5 46 466405.5 47 448263.5 48 431352.5 49 410404.0 50 390375.0 51 368371.0 52 342641.0 53 317372.5 54 291682.5 55 264528.5 56 235997.5 57 207545.0 58 181834.5 59 156138.5 60 129158.0 61 103767.0 62 80289.0 63 60431.5 64 45574.5 65 33729.5 66 24251.0 67 18204.0 68 13935.0 69 10106.0 70 7199.0 71 5159.0 72 3678.5 73 2542.0 74 1754.5 75 1240.5 76 810.0 77 487.5 78 330.0 79 212.5 80 125.0 81 75.5 82 60.0 83 50.5 84 35.5 85 24.0 86 14.5 87 7.5 88 4.5 89 3.5 90 2.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0032036096094255184 4 0.0 5 0.05188555044660349 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 7.435250856820298E-4 28-29 1.8943313336124932E-4 30-31 0.0 32-33 0.0 34-35 3.718105164373711E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 9.589683801753425E-6 46-47 1.11320312631966E-4 48-49 0.0 50-51 2.462461498183245E-5 52-53 4.962388814577117E-6 54-55 9.899665886276337E-4 56-57 0.0020664951778083013 58-59 0.008960579852692744 60-61 0.007786654883306545 62-63 0.00398048301972469 64-65 0.005088877559416035 66-67 0.0066036452121571105 68-69 0.003578229222748443 70-71 0.005339286610965677 72-73 9.478210357003875E-4 74-75 0.0015943200862560151 76-77 0.0013432063067199392 78-79 0.001031741933081779 80-81 4.534039585566112E-5 82-83 0.0 84-85 0.0 86-87 3.27601937437858E-4 88-89 9.228180425834386E-4 90-91 0.0 92-93 1.2113728039779544E-5 94-95 1.3486387484142E-4 96-97 3.293392764366385E-4 98-99 1.2820256415384511E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 165.0 20-21 700.0 22-23 1375.0 24-25 1784.0 26-27 3934.0 28-29 8577.0 30-31 20851.0 32-33 27596.0 34-35 37788.0 36-37 57915.0 38-39 69737.0 40-41 69301.0 42-43 80711.0 44-45 95778.0 46-47 95923.0 48-49 87122.0 50-51 78246.0 52-53 74238.0 54-55 78969.0 56-57 82378.0 58-59 83521.0 60-61 82546.0 62-63 81138.0 64-65 93265.0 66-67 103268.0 68-69 101292.0 70-71 113030.0 72-73 84699.0 74-75 85307.0 76-77 90065.0 78-79 93999.0 80-81 95694.0 82-83 90987.0 84-85 89795.0 86-87 93379.0 88-89 97134.0 90-91 99856.0 92-93 98186.0 94-95 103672.0 96-97 162477.0 98-99 865885.0 100-101 7049249.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.44072696646685 #Duplication Level Percentage of deduplicated Percentage of total 1 89.48171816011423 75.55901331648545 2 7.280327939686211 12.295123675627668 3 1.7976253039829189 4.553783624449009 4 0.6755747155169823 2.281840803936721 5 0.2937692667405668 1.2403045221989686 6 0.15693200672044288 0.7950871639068395 7 0.08596963770591536 0.5081537093451891 8 0.05595882551106468 0.3780163125075178 9 0.036515137168297976 0.2775028254994201 >10 0.13100363529971157 1.7069621581068148 >50 0.003667549652573812 0.21503228964964743 >100 8.469970186432633E-4 0.12613862649181246 >500 5.4496669139879744E-5 0.028331295795539276 >1k 3.632821322182522E-5 0.034709675999367806 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8464608699858894E-5 0.0 0.0 9.232304349929447E-6 3 0.0 2.769691304978834E-5 0.0 0.0 9.232304349929447E-6 4 0.0 6.462613044950612E-5 0.0 2.769691304978834E-5 9.232304349929447E-6 5 0.0 6.462613044950612E-5 0.0 2.769691304978834E-5 9.232304349929447E-6 6 0.0 6.462613044950612E-5 0.0 2.769691304978834E-5 9.232304349929447E-6 7 0.0 6.462613044950612E-5 0.0 2.769691304978834E-5 9.232304349929447E-6 8 0.0 8.309073914936502E-5 0.0 3.692921739971779E-5 9.232304349929447E-6 9 0.0 1.754137826486595E-4 0.0 5.539382609957668E-5 9.232304349929447E-6 10-11 0.0 1.754137826486595E-4 0.0 6.462613044950612E-5 9.232304349929447E-6 12-13 0.0 1.754137826486595E-4 0.0 6.924228262447085E-5 9.232304349929447E-6 14-15 0.0 2.446560652731303E-4 0.0 1.0617150002418864E-4 1.8464608699858894E-5 16-17 4.616152174964723E-6 2.4927221744809505E-4 0.0 1.2925226089901225E-4 2.769691304978834E-5 18-19 9.232304349929447E-6 2.585045217980245E-4 0.0 1.384845652489417E-4 2.769691304978834E-5 20-21 9.232304349929447E-6 2.6773682614795395E-4 0.0 1.6156532612376532E-4 2.769691304978834E-5 22-23 9.232304349929447E-6 3.369791087724248E-4 0.0 1.8926223917355365E-4 3.231306522475306E-5 24-25 9.232304349929447E-6 4.200698479217899E-4 0.0 2.16959152223342E-4 4.616152174964723E-5 26-27 9.232304349929447E-6 4.8007982619633125E-4 0.0 2.5388836962305977E-4 4.616152174964723E-5 28-29 9.232304349929447E-6 4.846959783712959E-4 0.0 4.385344566216487E-4 5.0777673924611956E-5 30-31 9.232304349929447E-6 5.354736522959079E-4 0.0 0.0011217249785164278 5.539382609957668E-5 32-33 9.232304349929447E-6 5.354736522959079E-4 0.0 0.0024604091092561976 5.539382609957668E-5 34-35 9.232304349929447E-6 6.370290001451318E-4 0.0 0.004634616783664582 5.539382609957668E-5 36-37 9.232304349929447E-6 7.293520436444262E-4 0.0 0.007565873414767181 5.539382609957668E-5 38-39 9.232304349929447E-6 7.893620219189677E-4 0.0 0.012209722502781694 5.539382609957668E-5 40-41 9.232304349929447E-6 8.770689132432974E-4 0.0 0.017079763047369478 5.539382609957668E-5 42-43 9.232304349929447E-6 8.955335219431563E-4 0.0 0.022005197418056836 5.539382609957668E-5 44-45 9.232304349929447E-6 9.555435002176977E-4 0.0 0.027087580962692995 5.539382609957668E-5 46-47 9.232304349929447E-6 9.878565654424507E-4 0.0 0.03250694361610158 6.00099782745414E-5 48-49 9.232304349929447E-6 9.924727176174155E-4 0.0 0.038069406986934076 8.309073914936502E-5 50-51 9.232304349929447E-6 0.0010940280654666394 0.0 0.04399193022741381 8.309073914936502E-5 52-53 9.232304349929447E-6 0.0010986442176416041 0.0 0.05001600881574278 8.309073914936502E-5 54-55 9.232304349929447E-6 0.0010986442176416041 0.0 0.05577235057792379 8.309073914936502E-5 56-57 9.232304349929447E-6 0.0010986442176416041 0.0 0.06179181301407779 8.309073914936502E-5 58-59 9.232304349929447E-6 0.0011032603698165689 0.0 0.06786205312415639 8.309073914936502E-5 60-61 1.8464608699858894E-5 0.0011494218915662161 0.0 0.0735537687558879 8.309073914936502E-5 62-63 1.8464608699858894E-5 0.0011955834133158634 0.0 0.07909776751802053 8.309073914936502E-5 64-65 1.8464608699858894E-5 0.0013479164350896993 0.0 0.08489103849760127 8.309073914936502E-5 66-67 1.8464608699858894E-5 0.0013571487394396287 0.0 0.09045350186843376 9.232304349929447E-5 68-69 1.8464608699858894E-5 0.001384845652489417 0.0 0.09622369208713966 1.0155534784922391E-4 70-71 1.8464608699858894E-5 0.0014310071742390643 0.0 0.10183693313189676 1.0155534784922391E-4 72-73 1.8464608699858894E-5 0.0014402394785889938 0.0 0.10594992471979034 1.2925226089901225E-4 74-75 1.8464608699858894E-5 0.001481784848163676 0.0 0.1092920188944648 1.2925226089901225E-4 76-77 1.8464608699858894E-5 0.0015371786742632528 0.0 0.11231098241689172 1.2925226089901225E-4 78-79 1.8464608699858894E-5 0.0015694917394880059 0.0 0.11486833072182218 1.3386841307397697E-4 80-81 1.8464608699858894E-5 0.0015741078916629706 0.0 0.11614238872211244 1.5233302177383587E-4 82-83 1.8464608699858894E-5 0.0015787240438379353 0.0 0.11666401391788345 1.6618147829873005E-4 84-85 1.8464608699858894E-5 0.0015787240438379353 0.0 0.11726411370062886 1.6618147829873005E-4 86-87 1.8464608699858894E-5 0.001601804804712759 0.0 0.11751338591807697 1.6618147829873005E-4 88-89 1.8464608699858894E-5 0.0016941278482120535 0.0 0.11758262820070144 1.6618147829873005E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18225 0.0 54.29752 1 CTTATAC 9830 0.0 35.53523 1 GTATCAA 32940 0.0 35.135456 1 ATCAACG 41060 0.0 29.148605 3 TCAACGC 41030 0.0 29.14779 4 TATCAAC 41995 0.0 28.560936 2 CAACGCA 41935 0.0 28.518751 5 TATACAC 14475 0.0 28.0157 3 AACGCAG 43455 0.0 27.51392 6 TGGTATC 7485 0.0 26.602009 2 GTGGTAT 7760 0.0 26.433485 1 ACGCAGA 49170 0.0 24.30727 7 CGCAGAG 49660 0.0 24.145151 8 TTATACA 16080 0.0 22.817513 2 ACATCTC 17010 0.0 21.530445 8 GCAGAGT 56225 0.0 21.348772 9 ACACATC 17225 0.0 21.261705 6 GAGTACT 36380 0.0 20.58169 12-13 TACACAT 20395 0.0 19.966993 5 CAGAGTA 56115 0.0 19.724613 10-11 >>END_MODULE