##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139703_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9295452 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.063533220331834 32.0 18.0 33.0 18.0 33.0 2 30.05755933116539 32.0 28.0 33.0 25.0 33.0 3 31.566794062300573 33.0 32.0 33.0 27.0 34.0 4 31.739275292906683 33.0 32.0 33.0 30.0 34.0 5 32.127271272015605 33.0 33.0 34.0 31.0 34.0 6 35.60717574573028 38.0 36.0 38.0 30.0 38.0 7 35.978478722713 38.0 37.0 38.0 31.0 38.0 8 36.323054220494065 38.0 37.0 38.0 33.0 38.0 9 36.45904728462909 38.0 37.0 38.0 34.0 38.0 10-11 36.567376497667894 38.0 38.0 38.0 34.0 38.0 12-13 36.5883678921692 38.0 38.0 38.0 34.0 38.0 14-15 36.6088915310412 38.0 38.0 38.0 34.0 38.0 16-17 36.612486514910735 38.0 38.0 38.0 34.0 38.0 18-19 36.621338908532906 38.0 38.0 38.0 34.0 38.0 20-21 36.61453664506068 38.0 38.0 38.0 34.0 38.0 22-23 36.61175966104763 38.0 38.0 38.0 34.0 38.0 24-25 36.61003123089023 38.0 38.0 38.0 34.0 38.0 26-27 36.556389456792786 38.0 38.0 38.0 34.0 38.0 28-29 36.53036494513193 38.0 38.0 38.0 34.0 38.0 30-31 36.52861461759673 38.0 38.0 38.0 34.0 38.0 32-33 36.50856793159933 38.0 38.0 38.0 34.0 38.0 34-35 36.475433678426825 38.0 38.0 38.0 34.0 38.0 36-37 36.455802134688874 38.0 38.0 38.0 34.0 38.0 38-39 36.4325475611694 38.0 38.0 38.0 34.0 38.0 40-41 36.44247658003138 38.0 38.0 38.0 34.0 38.0 42-43 36.39263200563825 38.0 38.0 38.0 34.0 38.0 44-45 36.34303404671205 38.0 38.0 38.0 33.0 38.0 46-47 36.30249308865174 38.0 38.0 38.0 33.0 38.0 48-49 36.257672272801656 38.0 38.0 38.0 33.0 38.0 50-51 36.22781718398592 38.0 37.0 38.0 33.0 38.0 52-53 36.20967283895136 38.0 37.0 38.0 33.0 38.0 54-55 36.1751443635305 38.0 37.0 38.0 33.0 38.0 56-57 36.17475517331846 38.0 37.0 38.0 33.0 38.0 58-59 36.15489245423417 38.0 37.0 38.0 33.0 38.0 60-61 36.14170436768699 38.0 37.0 38.0 33.0 38.0 62-63 36.1408775623329 38.0 37.0 38.0 33.0 38.0 64-65 36.13072928702077 38.0 37.0 38.0 33.0 38.0 66-67 36.13011882381742 38.0 37.0 38.0 33.0 38.0 68-69 36.11691213645659 38.0 37.0 38.0 33.0 38.0 70-71 36.08683981465118 38.0 37.0 38.0 33.0 38.0 72-73 36.058269958093646 38.0 37.0 38.0 32.5 38.0 74-75 36.0777388969057 38.0 37.0 38.0 33.0 38.0 76-77 36.06281175516369 38.0 37.0 38.0 32.5 38.0 78-79 36.04982998102493 38.0 37.0 38.0 32.0 38.0 80-81 36.008543243318954 38.0 37.0 38.0 31.0 38.0 82-83 36.01072870758832 38.0 37.0 38.0 31.0 38.0 84-85 36.003349441760584 38.0 37.0 38.0 31.0 38.0 86-87 36.0049777428803 38.0 37.0 38.0 31.0 38.0 88-89 35.976516150806006 38.0 37.0 38.0 31.0 38.0 90-91 35.958277387475746 38.0 37.0 38.0 31.0 38.0 92-93 35.910567852896136 38.0 37.0 38.0 31.0 38.0 94-95 35.90489107404737 38.0 37.0 38.0 31.0 38.0 96-97 35.936476551954165 38.0 37.0 38.0 31.0 38.0 98-99 35.97099496032966 38.0 37.0 38.0 31.0 38.0 100-101 35.44842017462331 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 28.0 19 55.0 20 124.0 21 566.0 22 2232.0 23 6753.0 24 15935.0 25 30853.0 26 50848.0 27 77950.0 28 110634.0 29 148939.0 30 191702.0 31 241561.0 32 304646.0 33 389137.0 34 523412.0 35 780888.0 36 1556442.0 37 4862744.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.03369647866505 23.208909044982427 14.49714333418106 24.260251142171462 2 15.21169707508575 21.239795547327876 40.92081805166656 22.627689325919814 3 18.140892679631122 26.68784614788772 30.14677531102208 25.024485861459084 4 13.157122429334258 18.86029856321134 38.290262808091526 29.69231619936287 5 13.73508808809035 37.11016557196311 35.65714450549871 13.497601834447842 6 29.461504400216366 38.511091230421066 18.484383545845862 13.543020823516706 7 26.114308373600338 33.00081588286401 22.874336826224265 18.010538917311393 8 23.88658453617963 37.48223324696852 20.895713301515624 17.73546891533623 9 24.902177968322572 17.46238913395497 21.284978933783965 36.35045396393849 10-11 23.887504340832486 27.21143092342363 28.74302938684423 20.158035348899656 12-13 24.890709994522055 24.535536303129746 28.95265878410216 21.621094918246044 14-15 22.016791977968147 25.99838490883255 26.579905944311143 25.404917168888158 16-17 21.479245979646823 29.216233917403912 27.31317960654307 21.9913404964062 18-19 21.49014916111664 28.106250239364368 29.255317546688424 21.148283052830568 20-21 22.239549473069523 27.122710752557573 29.281829889656535 21.355909884716375 22-23 21.974553301880093 27.22402816073429 29.132024852162168 21.669393685223447 24-25 21.851062582079024 27.373863940212846 29.210976114297583 21.56409736341055 26-27 21.83844872393744 27.476903485300134 29.12964057786877 21.55500721289366 28-29 21.646421290438717 27.356359174090283 29.23785600410664 21.759363531364365 30-31 21.929101672455904 27.29954065441228 29.22490389348838 21.546453779643436 32-33 21.59165458466192 27.293102956819627 29.336716294661848 21.7785261638566 34-35 21.685801844006615 27.369151666137064 29.184001823753512 21.761044666102805 36-37 21.709892365006997 27.345423614161575 29.289474539104127 21.6552094817273 38-39 21.59422288653031 27.412476605306775 29.308172527959613 21.685127980203305 40-41 21.880163655438185 27.268584845798333 29.21679740531406 21.634454093449424 42-43 21.888307029680902 27.345950659688338 29.023289905945386 21.742452404685373 44-45 21.85959879001933 27.503295136122823 28.83438528859599 21.802720785261855 46-47 22.042983715701425 27.40653377875908 28.480797967995535 22.069684537543957 48-49 21.927338024322278 27.524725153303315 28.47505839181959 22.072878430554816 50-51 21.81487731933838 27.64265557741585 28.48398266489891 22.05848443834686 52-53 22.011127953871465 27.59568196559039 28.53878836333572 21.854401717202425 54-55 21.96017755651624 27.52368109470712 28.420319723594005 22.095821625182637 56-57 22.100882432636105 27.762281961667583 28.176670515715312 21.960165089980997 58-59 21.861908158507692 27.953832507638804 28.40807385603003 21.77618547782347 60-61 22.04807892079313 28.09397319116415 28.155773928311618 21.7021739597311 62-63 21.8824496919299 28.290033923830933 28.06886642928118 21.758649954957992 64-65 21.827293548415494 28.23060672467989 28.08596155634101 21.856138170563604 66-67 21.93404744043593 28.2008442354136 27.951741352697425 21.91336697145304 68-69 21.90525058170693 28.061916106692863 28.09975695172596 21.933076359874242 70-71 21.975749689904145 27.69851759327083 28.21080502114767 22.114927695677352 72-73 22.069998384067382 27.64820531660665 28.16239708474204 22.11939921458392 74-75 21.913136304888287 27.759518765968892 28.169700556146925 22.157644372995893 76-77 22.045068432093196 27.71628556378297 28.087369235219445 22.15127676890439 78-79 22.028897155635303 27.71378008657517 28.080414112063686 22.17690864572584 80-81 22.056564266753178 27.744722249677338 28.04943929403806 22.149274189531422 82-83 22.10772719578518 27.744617032249398 28.098508754423644 22.049147017541777 84-85 22.190073315825302 27.72979424714687 28.01681297859459 22.063319458433238 86-87 22.052074059098306 27.743055422576564 28.07699339320042 22.127877125124712 88-89 22.105843615865712 27.74985628393202 27.993723690961385 22.150576409240884 90-91 22.171395334384236 27.76687921664956 28.023436236550243 22.03828921241596 92-93 22.172165365214624 27.75946498999079 27.977479623859292 22.090890020935294 94-95 22.05530306975277 27.808599153202184 27.98957795950384 22.146519817541204 96-97 22.105329356508467 27.796755171864156 28.012905640908325 22.08500983071905 98-99 22.354839425923213 28.37228500095505 28.05839787209921 21.214477701022528 100-101 22.878221513518866 30.906355373422294 25.47185583949379 20.74356727356505 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2008.0 1 1958.5 2 2555.5 3 3347.5 4 4146.5 5 5864.0 6 7601.0 7 9919.0 8 12357.0 9 13569.5 10 13347.5 11 12686.5 12 13606.5 13 16934.0 14 24291.5 15 33666.0 16 40833.0 17 44445.5 18 44469.5 19 41850.0 20 38245.0 21 35234.5 22 34771.5 23 38544.0 24 47336.5 25 61140.5 26 78820.5 27 97692.5 28 117069.0 29 137947.5 30 157956.5 31 178000.5 32 200553.5 33 223551.0 34 244834.0 35 265673.0 36 289099.5 37 308576.0 38 321441.0 39 332626.0 40 344675.0 41 357038.5 42 364632.5 43 371095.0 44 380290.0 45 394971.0 46 402854.0 47 397843.5 48 390775.0 49 379754.5 50 367983.0 51 354600.5 52 336524.5 53 318008.0 54 298833.5 55 276421.0 56 251479.0 57 224922.0 58 199255.5 59 172764.5 60 144177.5 61 117437.5 62 92478.5 63 70813.0 64 53276.5 65 39051.0 66 28339.5 67 21364.0 68 16211.0 69 11719.0 70 8417.5 71 6015.0 72 4217.0 73 2825.5 74 1857.0 75 1240.0 76 782.0 77 456.0 78 282.0 79 197.5 80 133.5 81 76.0 82 43.0 83 28.5 84 22.0 85 19.0 86 14.5 87 10.5 88 8.5 89 7.5 90 5.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003141321153613617 4 0.0 5 0.05173497749221878 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.6136923734316526E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.555636388682023E-4 28-29 2.1532243026675435E-4 30-31 0.0 32-33 0.0 34-35 6.494844473642378E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.570813084124124E-6 46-47 1.3485245371624988E-4 48-49 0.0 50-51 1.7130897818363034E-5 52-53 2.875498891868992E-5 54-55 0.0011236454859106441 56-57 0.0021305320358762916 58-59 0.008179088377638984 60-61 0.007433096642892029 62-63 0.0039706193305057425 64-65 0.004925772467536477 66-67 0.006201321678743421 68-69 0.003504228404869697 70-71 0.005263801273665898 72-73 0.0010672323751595512 74-75 0.001513586401179812 76-77 0.0013037801315411894 78-79 0.0011035879256896812 80-81 5.2157453965179164E-5 82-83 0.0 84-85 0.0 86-87 4.367291059389246E-4 88-89 9.099954099559881E-4 90-91 0.0 92-93 6.946016463031459E-6 94-95 1.4757695505733577E-4 96-97 3.204962250174083E-4 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 117.0 20-21 452.0 22-23 1024.0 24-25 1249.0 26-27 2838.0 28-29 6545.0 30-31 16530.0 32-33 21991.0 34-35 29884.0 36-37 46851.0 38-39 55579.0 40-41 54944.0 42-43 63651.0 44-45 75772.0 46-47 76060.0 48-49 69778.0 50-51 63094.0 52-53 60451.0 54-55 65735.0 56-57 68332.0 58-59 68785.0 60-61 67750.0 62-63 66910.0 64-65 76238.0 66-67 82034.0 68-69 81538.0 70-71 89322.0 72-73 69475.0 74-75 70743.0 76-77 74938.0 78-79 77960.0 80-81 78640.0 82-83 74878.0 84-85 74422.0 86-87 78105.0 88-89 81084.0 90-91 82967.0 92-93 82712.0 94-95 88812.0 96-97 142087.0 98-99 772168.0 100-101 6133007.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.54064181539468 #Duplication Level Percentage of deduplicated Percentage of total 1 90.03048083522899 77.01265113594079 2 7.039295961166711 12.04291788893432 3 1.6326505321049072 4.189739231294981 4 0.5837840522631251 1.997490500487185 5 0.2837699307045238 1.2136931000187519 6 0.1421097244295949 0.7293694221549853 7 0.08616337816614267 0.5159329468520085 8 0.05151968522286985 0.3525621552073113 9 0.03346734259010486 0.2576536168511937 >10 0.11426122747763136 1.490973669073677 >50 0.00207594612276766 0.12183457971589522 >100 3.808134219438116E-4 0.05028107395857817 >500 4.057110061891388E-5 0.02490067951033917 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0757949156211015E-5 0.0 1.0757949156211015E-5 0.0 3 0.0 1.0757949156211015E-5 0.0 1.0757949156211015E-5 0.0 4 0.0 6.454769493726609E-5 0.0 1.0757949156211015E-5 0.0 5 0.0 6.454769493726609E-5 0.0 1.0757949156211015E-5 0.0 6 1.0757949156211015E-5 6.454769493726609E-5 0.0 1.0757949156211015E-5 0.0 7 1.0757949156211015E-5 6.454769493726609E-5 0.0 1.0757949156211015E-5 0.0 8 1.0757949156211015E-5 8.606359324968812E-5 0.0 1.0757949156211015E-5 0.0 9 1.0757949156211015E-5 1.0757949156211016E-4 0.0 5.378974578105508E-5 0.0 10-11 1.0757949156211015E-5 1.0757949156211016E-4 0.0 7.53056440934771E-5 0.0 12-13 1.0757949156211015E-5 1.2909538987453218E-4 0.0 7.53056440934771E-5 0.0 14-15 1.0757949156211015E-5 1.9902205938990378E-4 0.0 7.53056440934771E-5 0.0 16-17 1.0757949156211015E-5 2.044010339680093E-4 0.0 7.53056440934771E-5 1.6136923734316522E-5 18-19 1.0757949156211015E-5 2.689487289052754E-4 0.0 7.53056440934771E-5 2.151589831242203E-5 20-21 1.0757949156211015E-5 3.334964238425415E-4 0.0 8.606359324968812E-5 2.151589831242203E-5 22-23 1.0757949156211015E-5 3.7114924588928005E-4 0.0 9.682154240589914E-5 2.151589831242203E-5 24-25 1.0757949156211015E-5 4.4107591540465163E-4 0.0 1.1833744071832117E-4 2.151589831242203E-5 26-27 1.0757949156211015E-5 4.841077120294957E-4 0.0 1.7212718649937627E-4 3.2273847468633044E-5 28-29 1.0757949156211015E-5 4.841077120294957E-4 0.0 3.442543729987525E-4 3.2273847468633044E-5 30-31 1.0757949156211015E-5 5.594133561229728E-4 0.0 9.090467036998308E-4 3.2273847468633044E-5 32-33 1.0757949156211015E-5 5.594133561229728E-4 0.0 0.0022107585516013637 3.2273847468633044E-5 34-35 1.0757949156211015E-5 6.185820764821335E-4 0.0 0.004152568374297452 3.2273847468633044E-5 36-37 1.0757949156211015E-5 6.77750796841294E-4 0.0 0.0071163833668335865 3.2273847468633044E-5 38-39 1.0757949156211015E-5 7.207825934661381E-4 0.0 0.011360394308958834 3.765282204673855E-5 40-41 1.0757949156211015E-5 7.960882375596151E-4 0.0 0.01605623911564494 4.303179662484406E-5 42-43 1.0757949156211015E-5 8.283620850282481E-4 0.0 0.020337902879816926 4.303179662484406E-5 44-45 1.0757949156211015E-5 9.251836274341474E-4 0.0 0.02541027590697042 4.841077120294957E-5 46-47 1.0757949156211015E-5 9.897313223714134E-4 0.0 0.031020546391934467 5.378974578105508E-5 48-49 1.0757949156211015E-5 0.00100586824610573 0.0 0.03674915431761683 5.378974578105508E-5 50-51 4.303179662484406E-5 0.0010596579918867853 0.0 0.04202054940416023 5.378974578105508E-5 52-53 4.303179662484406E-5 0.0010757949156211017 0.0 0.0476577147620148 5.378974578105508E-5 54-55 4.303179662484406E-5 0.0010757949156211017 0.0 0.053397080636853375 5.378974578105508E-5 56-57 4.303179662484406E-5 0.0010865528647773127 0.0 0.058905150604833416 5.378974578105508E-5 58-59 4.303179662484406E-5 0.0010973108139335237 0.0 0.06440784159823534 5.378974578105508E-5 60-61 4.303179662484406E-5 0.0010973108139335237 0.0 0.06980295310007517 5.378974578105508E-5 62-63 4.303179662484406E-5 0.0010973108139335237 0.0 0.07497752664421267 6.454769493726609E-5 64-65 4.303179662484406E-5 0.001237164152964267 0.0 0.0799853519764289 6.454769493726609E-5 66-67 5.378974578105508E-5 0.0012694380004329 0.0 0.08510613577478535 6.454769493726609E-5 68-69 5.378974578105508E-5 0.001301711847901533 0.0 0.09038290983590686 6.454769493726609E-5 70-71 5.378974578105508E-5 0.0013178487716358493 0.0 0.09517557618499886 6.454769493726609E-5 72-73 5.378974578105508E-5 0.0013286067207920606 0.0 0.09900002711003188 6.454769493726609E-5 74-75 5.378974578105508E-5 0.00137701749199501 0.0 0.10231885442472297 6.454769493726609E-5 76-77 5.378974578105508E-5 0.0014469441615103816 0.0 0.10512667915449406 6.454769493726609E-5 78-79 5.378974578105508E-5 0.0014845969835571202 0.0 0.10770858695198468 6.454769493726609E-5 80-81 5.378974578105508E-5 0.0014845969835571202 0.0 0.10890271930832413 6.454769493726609E-5 82-83 5.378974578105508E-5 0.0014953549327133312 0.0 0.10926848957963528 7.53056440934771E-5 84-85 5.378974578105508E-5 0.0015007339072914366 0.0 0.10961274395263404 7.53056440934771E-5 86-87 5.378974578105508E-5 0.0015061128818695422 0.0 0.10978487113913342 7.53056440934771E-5 88-89 5.378974578105508E-5 0.0016029344242754415 0.0 0.10982790293575827 7.53056440934771E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12700 0.0 50.430733 1 GTATCAA 23305 0.0 36.3652 1 CTTATAC 7745 0.0 33.13356 1 TCAACGC 28390 0.0 30.169632 4 ATCAACG 28610 0.0 29.878468 3 CAACGCA 29285 0.0 29.173962 5 TATCAAC 29685 0.0 29.08704 2 AACGCAG 30450 0.0 28.114225 6 TATACAC 11775 0.0 24.906948 3 GTGGTAT 6275 0.0 24.331118 1 ACGCAGA 35425 0.0 24.190268 7 TGGTATC 6040 0.0 23.921059 2 CGCAGAG 35900 0.0 23.858194 8 TTATACA 12330 0.0 22.21177 2 GCAGAGT 41730 0.0 20.535353 9 ACATCTC 13475 0.0 20.345228 8 ACACATC 13155 0.0 19.955408 6 GAGTACT 24975 0.0 19.805298 12-13 TATGCCG 7665 0.0 19.673067 42-43 CTCGTAT 7685 0.0 18.883173 38-39 >>END_MODULE