##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139701_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11334944 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.203494962127735 32.0 25.0 33.0 18.0 33.0 2 30.118858284610845 32.0 29.0 33.0 25.0 33.0 3 31.570339826998705 33.0 32.0 33.0 27.0 34.0 4 31.727015678242434 33.0 32.0 33.0 30.0 34.0 5 32.10221982570007 33.0 33.0 34.0 31.0 34.0 6 35.56887868171206 38.0 36.0 38.0 30.0 38.0 7 35.935325397284714 38.0 37.0 38.0 31.0 38.0 8 36.283930207330535 38.0 37.0 38.0 33.0 38.0 9 36.423000766479305 38.0 37.0 38.0 33.0 38.0 10-11 36.52988117982762 38.0 38.0 38.0 34.0 38.0 12-13 36.55434376208652 38.0 38.0 38.0 34.0 38.0 14-15 36.580880858343896 38.0 38.0 38.0 34.0 38.0 16-17 36.587272994026264 38.0 38.0 38.0 34.0 38.0 18-19 36.598921485628864 38.0 38.0 38.0 34.0 38.0 20-21 36.59178879374065 38.0 38.0 38.0 34.0 38.0 22-23 36.59007949764338 38.0 38.0 38.0 34.0 38.0 24-25 36.591057765811286 38.0 38.0 38.0 34.0 38.0 26-27 36.53861420877466 38.0 38.0 38.0 34.0 38.0 28-29 36.51331425232996 38.0 38.0 38.0 34.0 38.0 30-31 36.51255021364014 38.0 38.0 38.0 34.0 38.0 32-33 36.49575303874521 38.0 38.0 38.0 34.0 38.0 34-35 36.46487562944101 38.0 38.0 38.0 34.0 38.0 36-37 36.445076526940895 38.0 38.0 38.0 34.0 38.0 38-39 36.430060382948575 38.0 38.0 38.0 34.0 38.0 40-41 36.42591437877404 38.0 38.0 38.0 34.0 38.0 42-43 36.371273205579605 38.0 38.0 38.0 33.5 38.0 44-45 36.31759782213374 38.0 38.0 38.0 33.0 38.0 46-47 36.27402607273545 38.0 38.0 38.0 33.0 38.0 48-49 36.2206643530013 38.0 37.5 38.0 33.0 38.0 50-51 36.1937775688729 38.0 37.0 38.0 33.0 38.0 52-53 36.177218066912104 38.0 37.0 38.0 33.0 38.0 54-55 36.14489239432359 38.0 37.0 38.0 33.0 38.0 56-57 36.14762919947018 38.0 37.0 38.0 33.0 38.0 58-59 36.13113530983502 38.0 37.0 38.0 33.0 38.0 60-61 36.12036589647549 38.0 37.0 38.0 33.0 38.0 62-63 36.11791485910818 38.0 37.0 38.0 33.0 38.0 64-65 36.109587359662626 38.0 37.0 38.0 33.0 38.0 66-67 36.11534717300119 38.0 37.0 38.0 33.0 38.0 68-69 36.1038990367211 38.0 37.0 38.0 33.0 38.0 70-71 36.07744997549866 38.0 37.0 38.0 33.0 38.0 72-73 36.05188415892043 38.0 37.0 38.0 32.0 38.0 74-75 36.073134887558396 38.0 37.0 38.0 33.0 38.0 76-77 36.056345587210146 38.0 37.0 38.0 32.5 38.0 78-79 36.04346602435006 38.0 37.0 38.0 32.0 38.0 80-81 36.00241857722182 38.0 37.0 38.0 31.0 38.0 82-83 36.00453390839334 38.0 37.0 38.0 31.0 38.0 84-85 36.00067835705197 38.0 37.0 38.0 31.0 38.0 86-87 35.9981987611549 38.0 37.0 38.0 31.0 38.0 88-89 35.972584883514045 38.0 37.0 38.0 31.0 38.0 90-91 35.95187862213349 38.0 37.0 38.0 31.0 38.0 92-93 35.90100592111187 38.0 37.0 38.0 31.0 38.0 94-95 35.894713639893894 38.0 37.0 38.0 31.0 38.0 96-97 35.92468339650507 38.0 37.0 38.0 31.0 38.0 98-99 35.9569198360949 38.0 37.0 38.0 31.0 38.0 100-101 35.438688490390916 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 20.0 19 40.0 20 114.0 21 603.0 22 2829.0 23 8503.0 24 20202.0 25 37905.0 26 63546.0 27 96950.0 28 137323.0 29 184690.0 30 237869.0 31 300034.0 32 376174.0 33 477741.0 34 642206.0 35 958426.0 36 1913323.0 37 5876444.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.23956748264482 22.603667031791247 14.494981183850578 23.661784301713357 2 15.657536552452312 21.0812333964773 40.73799570602201 22.523234345048373 3 18.57298461490684 26.606239933485128 29.85600384239137 24.96477160921666 4 13.347600129299272 18.386354621602013 38.02623109562782 30.239814153470896 5 13.777061239729493 37.047540573378534 35.249526333141056 13.925871853750916 6 29.849243189909007 38.07707386997236 18.15248491743762 13.921198022681011 7 26.319415428960212 33.17572632030648 22.451976824940644 18.052881425792663 8 24.3192996807042 37.05603662444208 20.474940149682258 18.14972354517146 9 25.364448205478563 17.23325673245496 21.20382773836377 36.1984673237027 10-11 24.21249721216091 27.13078247232629 28.129900774101753 20.526819541411058 12-13 25.29196880019875 24.604051859453385 28.578707578969954 21.525271761377912 14-15 22.43978002890883 25.84710167072727 26.597872914061156 25.11524538630275 16-17 21.402752408834132 29.09686629241397 27.314215226824235 22.18616607192766 18-19 21.406890056095556 27.778434547184354 29.629537649237612 21.185137747482475 20-21 22.5673886316074 26.69331387558614 29.615985784469395 21.123311708337063 22-23 22.211407022313615 26.642110712138855 29.57521998496009 21.57126228058744 24-25 21.807951871156845 26.926327130021587 29.640766316833894 21.624954681987674 26-27 21.737139570802917 26.983160174568148 29.633196032856617 21.646504221772318 28-29 21.572994923786148 26.926547929097953 29.754087170722947 21.74636997639295 30-31 21.952875312154355 26.927404789771934 29.597453380956463 21.52226651711725 32-33 21.65167741731991 27.10137438959432 29.602044201185883 21.644903991899884 34-35 21.755835716715257 27.040039572373836 29.621147122579462 21.582977588331445 36-37 21.87369197616297 27.05288862076925 29.421958195167797 21.65146120789998 38-39 21.681192635328276 27.11596290059749 29.573319167568297 21.629525296505935 40-41 21.874809895305813 26.94997813880759 29.482970370649582 21.692241595237014 42-43 21.81196412951767 27.062396586198478 29.239279585759352 21.886359698524497 44-45 21.88323078635203 27.22115172321965 28.991240565935694 21.904376924492624 46-47 22.071470656648327 27.263717817132722 28.544234483711968 22.120577042506987 48-49 21.970045537199656 27.404764216362903 28.43788972671583 22.18730051972161 50-51 22.024641906747206 27.51914350032117 28.2816602514608 22.17455434147083 52-53 22.173105338636965 27.487326975807264 28.19342511168414 22.14614257387163 54-55 22.111447106828162 27.544832623957106 28.140951920700374 22.202768348514358 56-57 22.12805348388695 27.61162973736464 28.065033157606962 22.19528362114145 58-59 22.008874039033053 27.59422551506361 28.25665247179166 22.14024797411168 60-61 22.17048263149818 27.7075133404809 28.092363428910684 22.029640599110238 62-63 22.104391019193656 27.793600986271468 28.066598219851702 22.035409774683178 64-65 22.042992092960763 27.68018744843849 28.08772205193758 22.18909840666316 66-67 22.100815314480688 27.73063112153939 27.91029481965529 22.25825874432463 68-69 22.120999064051038 27.667229164890934 28.01805123460028 22.193720536457754 70-71 22.157600639794047 27.41217534531608 28.115392787075894 22.31483122781398 72-73 22.143616440181503 27.495179244559264 28.06588305628861 22.29532125897062 74-75 22.030431598588056 27.612106079815796 28.024307986900933 22.333154334695216 76-77 22.17364309232227 27.542559484763995 27.93864924122645 22.345148181687286 78-79 22.18109117911153 27.577771825640102 27.883047533757132 22.358089461491236 80-81 22.165414344601782 27.601690239948066 27.88478201318056 22.348113402269593 82-83 22.195882772109236 27.562734465857496 27.978971068536072 22.262411693497192 84-85 22.269008276602506 27.524950213080007 27.916429639086004 22.289611871231486 86-87 22.16683767327986 27.62503023966006 27.902577178191816 22.305554908868263 88-89 22.228105035321523 27.571891325043307 27.867145354517525 22.332858285117645 90-91 22.241767300127457 27.579225183927836 27.89167979327066 22.287327722674046 92-93 22.294935339378842 27.630604574885453 27.792969737584993 22.281490348150708 94-95 22.138329852663194 27.65244960772512 27.854349507005143 22.35487103260654 96-97 22.191301284675376 27.683939139447993 27.852513285915826 22.272246289960805 98-99 22.473356861344534 28.22657430329202 27.9213473849354 21.378721450428042 100-101 23.043484438548845 30.784756836677218 25.215512989959166 20.956245734814768 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3578.0 1 3589.0 2 4266.0 3 5133.0 4 6689.5 5 10242.5 6 13198.0 7 15970.0 8 18402.5 9 18990.5 10 18129.5 11 17158.5 12 18812.5 13 25079.0 14 40240.0 15 59453.0 16 73412.5 17 79902.0 18 79126.5 19 72462.5 20 62242.5 21 51639.5 22 45436.5 23 46364.5 24 53956.0 25 68269.0 26 87788.0 27 109004.0 28 131170.5 29 155063.0 30 178576.0 31 202666.5 32 229698.5 33 258420.0 34 284809.0 35 310225.5 36 340081.0 37 365781.5 38 384495.0 39 400007.0 40 415218.0 41 431311.0 42 442568.0 43 451884.5 44 466227.0 45 476461.5 46 477006.0 47 474950.0 48 468990.0 49 461524.0 50 454856.0 51 443084.5 52 424836.5 53 404409.0 54 382980.0 55 359459.5 56 333183.5 57 303368.5 58 270666.5 59 234315.5 60 195157.0 61 156784.0 62 121876.0 63 92807.5 64 68944.5 65 50150.0 66 36534.5 67 27189.0 68 20267.5 69 14573.5 70 10249.0 71 7119.5 72 4877.0 73 3208.0 74 2051.0 75 1295.5 76 825.0 77 504.5 78 314.5 79 216.5 80 147.5 81 98.0 82 63.5 83 36.5 84 23.0 85 18.0 86 13.5 87 10.0 88 8.0 89 7.5 90 8.5 91 6.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0029642846051996376 4 0.0 5 0.05098393075431162 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.64951541310549E-4 28-29 2.295885208565277E-4 30-31 0.0 32-33 0.0 34-35 8.885472128673009E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.592992434698441E-6 46-47 1.2997230522269107E-4 48-49 0.0 50-51 4.7331300359320304E-6 52-53 2.385240475412774E-5 54-55 0.001115361503807301 56-57 0.002235136343316942 58-59 0.0086727159145511 60-61 0.007645182207543648 62-63 0.004077763497583888 64-65 0.005007415193371608 66-67 0.006576401791478778 68-69 0.0036469535849348853 70-71 0.00562707951518905 72-73 0.0010040688320561526 74-75 0.0016101171526519342 76-77 0.0013806790019407337 78-79 0.0012336287631805017 80-81 9.258297626711648E-5 82-83 0.0 84-85 0.0 86-87 3.317775963185508E-4 88-89 7.734164922877865E-4 90-91 0.0 92-93 0.0 94-95 1.7100137461518794E-4 96-97 4.2448267817720206E-4 98-99 1.8524044858567992E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 187.0 20-21 622.0 22-23 1385.0 24-25 1881.0 26-27 4222.0 28-29 9840.0 30-31 23191.0 32-33 30058.0 34-35 41475.0 36-37 63731.0 38-39 76167.0 40-41 77866.0 42-43 90997.0 44-45 112536.0 46-47 114050.0 48-49 100855.0 50-51 85261.0 52-53 79181.0 54-55 86313.0 56-57 90826.0 58-59 90689.0 60-61 89655.0 62-63 86108.0 64-65 92863.0 66-67 98793.0 68-69 100289.0 70-71 102236.0 72-73 89968.0 74-75 90559.0 76-77 96610.0 78-79 100256.0 80-81 101033.0 82-83 95472.0 84-85 94297.0 86-87 97728.0 88-89 102847.0 90-91 106023.0 92-93 103292.0 94-95 109364.0 96-97 172570.0 98-99 924863.0 100-101 7298785.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.68550391843924 #Duplication Level Percentage of deduplicated Percentage of total 1 90.04958550768568 77.1594411187263 2 7.04502850706015 12.073136354944374 3 1.6736492829838732 4.302224465856231 4 0.572277844791772 1.9614366204936537 5 0.26100390333974827 1.1182125491172967 6 0.13328210331594875 0.6852206511561929 7 0.0761295183347284 0.45662372991054834 8 0.049859236042846235 0.34177710122557503 9 0.031667599601089357 0.2442108806736036 >10 0.10424653133762711 1.390620711239697 >50 0.002543461107938428 0.1445407535602339 >100 6.93126941388293E-4 0.09793078870812308 >500 3.3377457207870036E-5 0.0246242743880569 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.7644551221426413E-5 0.0 0.0 0.0 5 0.0 1.7644551221426413E-5 0.0 0.0 8.822275610713206E-6 6 3.5289102442852826E-5 1.7644551221426413E-5 0.0 0.0 8.822275610713206E-6 7 3.5289102442852826E-5 1.7644551221426413E-5 0.0 1.7644551221426413E-5 8.822275610713206E-6 8 3.5289102442852826E-5 1.7644551221426413E-5 0.0 1.7644551221426413E-5 8.822275610713206E-6 9 3.5289102442852826E-5 7.940048049641886E-5 0.0 3.5289102442852826E-5 8.822275610713206E-6 10-11 3.5289102442852826E-5 7.940048049641886E-5 0.0 6.175592927499245E-5 8.822275610713206E-6 12-13 3.5289102442852826E-5 8.822275610713207E-5 0.0 1.0586730732855848E-4 8.822275610713206E-6 14-15 3.970024024820943E-5 1.1027844513391508E-4 0.0 1.235118585499849E-4 2.646682683213962E-5 16-17 7.498934269106226E-5 1.146895829392717E-4 0.0 1.323341341606981E-4 3.5289102442852826E-5 18-19 7.940048049641886E-5 1.323341341606981E-4 0.0 1.8526778782497735E-4 3.5289102442852826E-5 20-21 7.940048049641886E-5 1.5880096099283773E-4 0.0 2.293791658785434E-4 3.5289102442852826E-5 22-23 8.822275610713207E-5 1.7203437440890752E-4 0.0 2.7349054393210946E-4 3.970024024820943E-5 24-25 8.822275610713207E-5 1.9409006343569057E-4 0.0 3.1760192198567545E-4 4.852251585892264E-5 26-27 8.822275610713207E-5 2.0291233904640377E-4 0.0 3.793578512606679E-4 6.175592927499245E-5 28-29 8.822275610713207E-5 2.0291233904640377E-4 0.0 7.013709110517E-4 6.175592927499245E-5 30-31 8.822275610713207E-5 2.470237170999698E-4 0.0 0.0016497655392033695 6.175592927499245E-5 32-33 8.822275610713207E-5 2.470237170999698E-4 0.0 0.003281886527185313 7.057820488570565E-5 34-35 1.0145616952320189E-4 2.9113509515353586E-4 0.0 0.005297776504233281 7.940048049641886E-5 36-37 1.0586730732855848E-4 3.3524647320710185E-4 0.0 0.008910498366820339 8.822275610713207E-5 38-39 1.0586730732855848E-4 3.528910244285283E-4 0.0 0.014406776072294666 9.263389391248867E-5 40-41 1.0586730732855848E-4 3.661244378445981E-4 0.0 0.02037504552294215 9.704503171784527E-5 42-43 1.0586730732855848E-4 3.9259126467673774E-4 0.0 0.025778689334503987 9.704503171784527E-5 44-45 1.0586730732855848E-4 4.675806073678E-4 0.0 0.03208661639616393 1.0145616952320189E-4 46-47 1.0586730732855848E-4 5.205142610320792E-4 0.0 0.03859745579687028 1.0586730732855848E-4 48-49 1.0586730732855848E-4 5.205142610320792E-4 0.0 0.04506418381952306 1.146895829392717E-4 50-51 1.1910072074462831E-4 5.77859052501715E-4 0.0 0.05218376023736862 1.146895829392717E-4 52-53 1.235118585499849E-4 5.822701903070716E-4 0.0 0.05874753329173925 1.1910072074462831E-4 54-55 1.235118585499849E-4 5.866813281124282E-4 0.0 0.06550539640954556 1.279229963553415E-4 56-57 1.235118585499849E-4 5.999147415284981E-4 0.0 0.07254998348470006 1.323341341606981E-4 58-59 1.235118585499849E-4 6.043258793338547E-4 0.0 0.07883144371952786 1.367452719660547E-4 60-61 1.323341341606981E-4 6.175592927499245E-4 0.0 0.08534669425803956 1.411564097714113E-4 62-63 1.411564097714113E-4 6.175592927499245E-4 0.0 0.0916766770087263 1.411564097714113E-4 64-65 1.411564097714113E-4 6.793152220249169E-4 0.0 0.09759642394351485 1.411564097714113E-4 66-67 1.411564097714113E-4 6.969597732463433E-4 0.0 0.10386023962712124 1.411564097714113E-4 68-69 1.411564097714113E-4 7.057820488570566E-4 0.0 0.10974028632166158 1.4556754757676793E-4 70-71 1.5438982318748113E-4 7.057820488570566E-4 0.0 0.11557181050034301 1.9409006343569055E-4 72-73 1.6762323660355092E-4 7.101931866624132E-4 0.0 0.1201064601642496 2.0291233904640377E-4 74-75 1.6762323660355092E-4 7.23426600078483E-4 0.0 0.12399267257076876 2.0291233904640377E-4 76-77 1.7203437440890752E-4 7.322488756891962E-4 0.0 0.12707605789671303 2.0732347685176037E-4 78-79 1.7644551221426415E-4 7.322488756891962E-4 0.0 0.1297933187848127 2.1173461465711697E-4 80-81 1.7644551221426415E-4 7.410711512999094E-4 0.0 0.13078141365321258 2.1614575246247357E-4 82-83 1.7644551221426415E-4 7.498934269106226E-4 0.0 0.13119164946911074 2.382014414892566E-4 84-85 1.7644551221426415E-4 7.631268403266924E-4 0.0 0.13167687462769997 2.382014414892566E-4 86-87 1.7644551221426415E-4 7.851825293534754E-4 0.0 0.13188860924235707 2.382014414892566E-4 88-89 1.7644551221426415E-4 8.292939074070415E-4 0.0 0.131937131758216 2.4261257929461322E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19895 0.0 54.12898 1 GTATCAA 36885 0.0 37.26932 1 TGGTATC 8145 0.0 32.095245 2 GTGGTAT 8415 0.0 30.55701 1 TCAACGC 46620 0.0 30.064137 4 ATCAACG 46805 0.0 29.955374 3 TATCAAC 47240 0.0 29.770103 2 CAACGCA 47625 0.0 29.429712 5 AACGCAG 49070 0.0 28.591022 6 ACGCAGA 56340 0.0 24.939642 7 CGCAGAG 57260 0.0 24.59121 8 GCAGAGT 65175 0.0 21.565434 9 GAGTACT 37465 0.0 20.578299 12-13 CAGAGTA 64330 0.0 19.572104 10-11 GTACTTT 40730 0.0 18.876543 14-15 AGAGTAC 60735 0.0 18.287573 10-11 TACATGG 44655 0.0 18.108492 2 GTACATG 44430 0.0 17.95945 1 ACATGGG 45215 0.0 17.373234 3 AGTACTT 40110 0.0 17.014523 12-13 >>END_MODULE