##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139700_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12868741 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.801600871445 31.0 18.0 33.0 18.0 33.0 2 29.965589563112662 32.0 28.0 33.0 25.0 33.0 3 31.520914205981768 33.0 32.0 33.0 27.0 34.0 4 31.708647722415115 33.0 32.0 33.0 29.0 34.0 5 32.10552850508064 33.0 33.0 34.0 31.0 34.0 6 35.588948988871564 38.0 36.0 38.0 30.0 38.0 7 35.96447305917494 38.0 37.0 38.0 31.0 38.0 8 36.31384678578891 38.0 37.0 38.0 33.0 38.0 9 36.44890195552152 38.0 37.0 38.0 34.0 38.0 10-11 36.55684887900067 38.0 38.0 38.0 34.0 38.0 12-13 36.57885942377735 38.0 38.0 38.0 34.0 38.0 14-15 36.60149085291249 38.0 38.0 38.0 34.0 38.0 16-17 36.603495866456555 38.0 38.0 38.0 34.0 38.0 18-19 36.610573598458465 38.0 38.0 38.0 34.0 38.0 20-21 36.604000720781556 38.0 38.0 38.0 34.0 38.0 22-23 36.602519481901396 38.0 38.0 38.0 34.0 38.0 24-25 36.603660796461625 38.0 38.0 38.0 34.0 38.0 26-27 36.550543416921506 38.0 38.0 38.0 34.0 38.0 28-29 36.524843202741 38.0 38.0 38.0 34.0 38.0 30-31 36.52343570476606 38.0 38.0 38.0 34.0 38.0 32-33 36.50647686592595 38.0 38.0 38.0 34.0 38.0 34-35 36.47345701252171 38.0 38.0 38.0 34.0 38.0 36-37 36.454680122689574 38.0 38.0 38.0 34.0 38.0 38-39 36.43727335750846 38.0 38.0 38.0 34.0 38.0 40-41 36.43756960483127 38.0 38.0 38.0 34.0 38.0 42-43 36.38754815242862 38.0 38.0 38.0 34.0 38.0 44-45 36.34104740171001 38.0 38.0 38.0 33.0 38.0 46-47 36.30656742713474 38.0 38.0 38.0 33.0 38.0 48-49 36.260503516620204 38.0 38.0 38.0 33.0 38.0 50-51 36.23455904245375 38.0 37.0 38.0 33.0 38.0 52-53 36.21846853273006 38.0 37.0 38.0 33.0 38.0 54-55 36.18489511308637 38.0 37.0 38.0 33.0 38.0 56-57 36.18462270273655 38.0 37.0 38.0 33.0 38.0 58-59 36.16573350461114 38.0 37.0 38.0 33.0 38.0 60-61 36.15264477770671 38.0 37.0 38.0 33.0 38.0 62-63 36.14798747083094 38.0 37.0 38.0 33.0 38.0 64-65 36.13889822459345 38.0 37.0 38.0 33.0 38.0 66-67 36.14072149869031 38.0 37.0 38.0 33.0 38.0 68-69 36.127214934062145 38.0 37.0 38.0 33.0 38.0 70-71 36.09713345892828 38.0 37.0 38.0 33.0 38.0 72-73 36.07173476088147 38.0 37.0 38.0 32.5 38.0 74-75 36.089863444997334 38.0 37.0 38.0 33.0 38.0 76-77 36.07092699187264 38.0 37.0 38.0 32.5 38.0 78-79 36.05665677090026 38.0 37.0 38.0 32.5 38.0 80-81 36.01401391567581 38.0 37.0 38.0 31.5 38.0 82-83 36.01509217688394 38.0 37.0 38.0 31.0 38.0 84-85 36.01209752269244 38.0 37.0 38.0 31.0 38.0 86-87 36.00722382495053 38.0 37.0 38.0 31.0 38.0 88-89 35.977468873202994 38.0 37.0 38.0 31.0 38.0 90-91 35.95895723463788 38.0 37.0 38.0 31.0 38.0 92-93 35.906919820699734 38.0 37.0 38.0 31.0 38.0 94-95 35.90190216196553 38.0 37.0 38.0 31.0 38.0 96-97 35.93088566501574 38.0 37.0 38.0 31.0 38.0 98-99 35.96356887545062 38.0 37.0 38.0 31.0 38.0 100-101 35.4385418409759 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 20.0 19 41.0 20 144.0 21 693.0 22 3126.0 23 9738.0 24 22673.0 25 42866.0 26 71122.0 27 107680.0 28 152880.0 29 204464.0 30 263577.0 31 333375.0 32 418886.0 33 540736.0 34 727468.0 35 1087063.0 36 2180190.0 37 6701997.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 37.87333974628909 23.43188816994607 14.320320845683352 24.374451238081488 2 15.350530405421944 21.406585150792917 40.6748103796634 22.568074064121735 3 18.289083436778316 26.678967644191324 29.974509560430185 25.057439358600174 4 13.274196753202197 18.690849400108373 38.38191319570423 29.653040650985208 5 13.805168770925711 37.0539010219739 35.6162273731769 13.524702833923488 6 29.55683077311137 38.4529302439143 18.534563715284968 13.455675267689356 7 26.070312550388575 32.89641154484343 23.111398387767693 17.921877517000304 8 23.739851474204045 37.62899571916165 20.946174921074252 17.684977885560055 9 24.969800853090447 17.397871322454932 21.428724068655978 36.203603755798646 10-11 23.957110489674164 27.204658171300515 28.756247406020524 20.08198393300479 12-13 24.84161426514062 24.581693733676044 29.021883337305493 21.554808663877843 14-15 22.014113269830613 26.001061486983186 26.646291711542858 25.33853353164335 16-17 21.536311187563385 29.10858292620012 27.446232986048635 21.908872900187863 18-19 21.536947553766137 28.12388950869397 29.244243861928688 21.094919075611205 20-21 22.2480294499245 27.225366336744454 29.268621146478125 21.25798306685292 22-23 22.00065023141423 27.182758352845006 29.11294780783536 21.703643607905406 24-25 21.832600831560757 27.35001874649086 29.170868823684128 21.646511598264258 26-27 21.75725105990237 27.49429437314945 29.128393521142605 21.620061045805574 28-29 21.665036565017143 27.456048007611418 29.231927596658615 21.646987830712828 30-31 22.00003907235383 27.391101574966108 29.037942913734394 21.570916438945673 32-33 21.868695578230167 27.406946671319893 29.040275740541166 21.684082009908778 34-35 21.901479883437897 27.462096132310087 29.055268659887588 21.581155324364428 36-37 21.838727001054846 27.444301000355797 29.007705575843023 21.709266422746335 38-39 21.712032156858633 27.49296959169698 29.10609743250826 21.68890081893613 40-41 21.965934213871158 27.352645714054685 29.002292237075867 21.67912783499829 42-43 21.90712598913074 27.432153360297818 28.80593363466103 21.85478701591041 44-45 21.902940864076566 27.55662871477922 28.69923120150519 21.841199219639023 46-47 22.043113620017877 27.517783302478126 28.396322069848352 22.04278100765564 48-49 21.954735112621883 27.640926243578978 28.37521654278925 22.02912210100989 50-51 21.914907465969833 27.758424123109332 28.302732005762714 22.023936405158118 52-53 22.09446204017057 27.706469656538097 28.260067586355625 21.939000716935706 54-55 22.031597180385827 27.637552046802362 28.25211197338991 22.078738799421906 56-57 22.106772080524557 27.73450774320943 28.12607090279598 22.032649273470035 58-59 21.98917490817756 27.881388547861256 28.231014064458794 21.89842247950239 60-61 22.13799522322381 27.89544803899391 28.14069862859052 21.82585810919176 62-63 22.026691438972094 28.011264197717562 28.088493300135564 21.87355106317478 64-65 21.95388200272289 27.956870271422428 28.10274646889385 21.986501256960832 66-67 22.056201720514302 27.955739640610965 27.97087459601472 22.017184042860013 68-69 22.026581960037404 27.89450267966027 28.055786502082427 22.023128858219902 70-71 22.036580200236557 27.610281274648056 28.168136973062612 22.185001552052775 72-73 22.110816272038345 27.60248298624023 28.09798556613493 22.188715175586495 74-75 21.96999501791281 27.764737502198823 28.05429419875755 22.210973281130816 76-77 22.10708792724242 27.710577341675258 27.986785919033714 22.195548812048607 78-79 22.08529098333249 27.707443220776725 27.962325012959933 22.24494078293085 80-81 22.095987287835523 27.753149867413008 27.953026726554125 22.197836118197344 82-83 22.152332261637962 27.704320676715287 28.00622058159119 22.137126480055556 84-85 22.241937806519267 27.706282166180458 27.936972274821485 22.11480775247879 86-87 22.095756757186955 27.76486977121398 27.968781118815688 22.170592352783373 88-89 22.154449687453763 27.691234654778384 27.95047318562464 22.203842472143215 90-91 22.17493722871209 27.73583045209272 27.961582289527176 22.12765002966802 92-93 22.243457486913616 27.739921099876142 27.87519696035749 22.14142445285275 94-95 22.077093114171433 27.84628929756796 27.901345646880355 22.175271941380252 96-97 22.11396461054217 27.835501457932377 27.93025097034572 22.120282961179736 98-99 22.37647767313634 28.36812331370981 27.990501716179033 21.264897296974823 100-101 22.979606355932958 30.890833044817796 25.34982038794304 20.779740211306205 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2853.0 1 2834.0 2 3662.5 3 4774.0 4 5948.0 5 8339.5 6 10602.0 7 13401.0 8 16253.0 9 17660.0 10 17502.5 11 16869.0 12 18145.0 13 22561.0 14 32181.0 15 44178.5 16 53155.5 17 57675.0 18 57801.0 19 54449.5 20 49987.5 21 46049.5 22 45404.0 23 51181.0 24 62682.0 25 80598.0 26 104600.5 27 131076.5 28 158799.5 29 187092.0 30 214680.0 31 243674.0 32 274468.5 33 307222.5 34 339504.0 35 368035.5 36 399804.0 37 428293.5 38 449092.5 39 466930.0 40 484132.5 41 500935.5 42 511990.5 43 520863.5 44 535595.0 45 546105.0 46 543813.0 47 541252.0 48 539010.0 49 530652.5 50 516942.0 51 498230.5 52 475120.0 53 448983.5 54 420443.0 55 388410.0 56 354731.5 57 317520.5 58 279277.0 59 241053.5 60 199837.5 61 160769.0 62 126331.0 63 96763.5 64 71991.0 65 52625.0 66 38193.0 67 28226.5 68 20922.5 69 15143.0 70 10923.5 71 7742.5 72 5314.0 73 3438.5 74 2132.5 75 1318.0 76 847.5 77 502.0 78 305.0 79 212.0 80 148.5 81 98.5 82 67.5 83 49.5 84 40.5 85 35.0 86 28.0 87 19.5 88 11.0 89 6.5 90 3.5 91 1.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003007287193051752 4 0.0 5 0.05107725767423557 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.770767940702203E-6 16-17 3.885383970351101E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 7.92887241756334E-4 28-29 1.8663025199399844E-4 30-31 0.0 32-33 0.0 34-35 7.035370638568543E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 9.734986490880935E-5 48-49 0.0 50-51 2.0611160481710853E-5 52-53 2.0760281363262903E-5 54-55 0.001137542096899098 56-57 0.002094868545734247 58-59 0.008465882980332504 60-61 0.007654119510547771 62-63 0.004298962373061795 64-65 0.005070364152769375 66-67 0.006509848904692647 68-69 0.003661574149339765 70-71 0.005375736641810049 72-73 9.91438992209055E-4 74-75 0.0016398092705406666 76-77 0.0014984549546228649 78-79 0.0011362514505833068 80-81 7.058126020487388E-5 82-83 0.0 84-85 0.0 86-87 2.7661092988781583E-4 88-89 9.909856608299574E-4 90-91 0.0 92-93 5.0208163043980345E-6 94-95 1.320903563066236E-4 96-97 3.4501062117772E-4 98-99 1.0634231410127267E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 145.0 20-21 566.0 22-23 1311.0 24-25 1681.0 26-27 3723.0 28-29 8110.0 30-31 22493.0 32-33 29398.0 34-35 40493.0 36-37 64157.0 38-39 76046.0 40-41 76203.0 42-43 86827.0 44-45 104080.0 46-47 104911.0 48-49 96862.0 50-51 88648.0 52-53 85008.0 54-55 91691.0 56-57 97193.0 58-59 97555.0 60-61 96034.0 62-63 92827.0 64-65 101612.0 66-67 108386.0 68-69 110295.0 70-71 113400.0 72-73 98180.0 74-75 100258.0 76-77 106186.0 78-79 110273.0 80-81 111541.0 82-83 107040.0 84-85 105375.0 86-87 109860.0 88-89 115214.0 90-91 118018.0 92-93 115657.0 94-95 123845.0 96-97 198450.0 98-99 1073514.0 100-101 8475675.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.27437382822363 #Duplication Level Percentage of deduplicated Percentage of total 1 89.36065340365894 75.30813110474278 2 7.407710410653522 12.485603127172777 3 1.746677805148797 4.416005349257126 4 0.6756272489082397 2.2775225337210916 5 0.3043837376681186 1.2825874447737493 6 0.164338375762099 0.830970822797893 7 0.0918446712171709 0.5418106509400306 8 0.06206249522879814 0.4184222338899264 9 0.04503334005507458 0.3415640881081385 >10 0.13819164566398584 1.7979827854206487 >50 0.002565967517260519 0.1434158004034884 >100 8.636359281487987E-4 0.11324620911139104 >500 1.575423506819848E-5 0.012174809969873183 >1k 3.150835477177037E-5 0.030563039691139028 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3312303822106606E-5 0.0 0.0 0.0 3 0.0 2.3312303822106606E-5 0.0 0.0 0.0 4 0.0 8.547844734772422E-5 0.0 1.5541535881404405E-5 0.0 5 0.0 8.547844734772422E-5 0.0 1.5541535881404405E-5 0.0 6 7.770767940702203E-6 8.547844734772422E-5 0.0 3.108307176280881E-5 0.0 7 7.770767940702203E-6 8.547844734772422E-5 0.0 3.885383970351101E-5 0.0 8 7.770767940702203E-6 8.547844734772422E-5 0.0 3.885383970351101E-5 0.0 9 7.770767940702203E-6 1.3210305499193744E-4 0.0 7.770767940702202E-5 0.0 10-11 1.5541535881404405E-5 1.3210305499193744E-4 0.0 9.713459925877752E-5 0.0 12-13 2.3312303822106606E-5 1.3210305499193744E-4 0.0 1.2044690308088414E-4 3.885383970351101E-6 14-15 3.108307176280881E-5 1.5541535881404404E-4 0.0 1.2433228705123524E-4 7.770767940702203E-6 16-17 3.885383970351101E-5 1.6707151072509733E-4 0.0 1.4375920690299076E-4 7.770767940702203E-6 18-19 3.885383970351101E-5 1.8261304660650173E-4 0.0 1.7872766263615065E-4 1.1656151911053305E-5 20-21 3.885383970351101E-5 2.0203996645825725E-4 0.0 2.1758150233966168E-4 1.5541535881404405E-5 22-23 6.605152749596872E-5 2.0981073439895945E-4 0.0 2.603207260135238E-4 1.5541535881404405E-5 24-25 7.770767940702202E-5 2.1758150233966168E-4 0.0 2.991745657170348E-4 1.5541535881404405E-5 26-27 7.770767940702202E-5 2.2535227028036388E-4 0.0 4.196214687979189E-4 1.5541535881404405E-5 28-29 9.324921528842642E-5 2.2535227028036388E-4 0.0 7.071398826039004E-4 1.5541535881404405E-5 30-31 1.1656151911053304E-4 2.642061099838749E-4 0.0 0.001647402803428867 1.5541535881404405E-5 32-33 1.2433228705123524E-4 2.642061099838749E-4 0.0 0.0036600317000707377 1.5541535881404405E-5 34-35 1.2433228705123524E-4 3.186014855687903E-4 0.0 0.00663235043738933 1.5541535881404405E-5 36-37 1.2433228705123524E-4 3.84653013064759E-4 0.0 0.011446341176654343 1.5541535881404405E-5 38-39 1.2433228705123524E-4 4.0796531688686564E-4 0.0 0.018280731580501933 1.5541535881404405E-5 40-41 1.2821767102158635E-4 4.6236069247178107E-4 0.0 0.025655190356228322 1.5541535881404405E-5 42-43 1.3598843896228853E-4 4.8178761232353656E-4 0.0 0.032718818414326625 1.5541535881404405E-5 44-45 1.3987382293263964E-4 5.40068371878803E-4 0.0 0.04102188395896693 1.5541535881404405E-5 46-47 1.3987382293263964E-4 5.75036827611963E-4 0.0 0.049845590955634275 1.5541535881404405E-5 48-49 1.4375920690299076E-4 5.828075955526652E-4 0.0 0.05894516021419655 1.5541535881404405E-5 50-51 1.5930074278439516E-4 6.100052833451229E-4 0.0 0.0681107810002548 3.108307176280881E-5 52-53 1.6318612675474625E-4 6.13890667315474E-4 0.0 0.07716761103514322 3.108307176280881E-5 54-55 1.6707151072509733E-4 6.13890667315474E-4 0.0 0.08625552414179445 3.108307176280881E-5 56-57 1.7095689469544845E-4 6.255468192265273E-4 0.0 0.09282182305168782 3.885383970351101E-5 58-59 1.9815458248790614E-4 6.294322031968784E-4 0.0 0.09815256985900953 4.662460764421321E-5 60-61 2.1369611836931056E-4 6.372029711375806E-4 0.0 0.10361930510529352 4.662460764421321E-5 62-63 2.1758150233966168E-4 6.605152749596872E-4 0.0 0.1090161034401112 4.662460764421321E-5 64-65 2.1758150233966168E-4 7.226814184853049E-4 0.0 0.11436627716728466 4.662460764421321E-5 66-67 2.2146688631001276E-4 7.343375703963581E-4 0.0 0.11963874321505111 4.662460764421321E-5 68-69 2.2535227028036388E-4 7.459937223074114E-4 0.0 0.12515987383692 4.662460764421321E-5 70-71 2.2535227028036388E-4 7.459937223074114E-4 0.0 0.13012927993499906 4.662460764421321E-5 72-73 2.4089380616176828E-4 7.498791062777626E-4 0.0 0.13421670387180845 4.662460764421321E-5 74-75 2.4089380616176828E-4 7.69306026129518E-4 0.0 0.13757756100616214 5.439537558491542E-5 76-77 2.4089380616176828E-4 7.809621780405713E-4 0.0 0.14077134662979074 5.439537558491542E-5 78-79 2.4089380616176828E-4 7.926183299516246E-4 0.0 0.14363487461593952 5.439537558491542E-5 80-81 2.4089380616176828E-4 7.926183299516246E-4 0.0 0.14476163596734132 5.828075955526652E-5 82-83 2.4089380616176828E-4 7.926183299516246E-4 0.0 0.14533278741098293 6.216614352561762E-5 84-85 2.4089380616176828E-4 7.926183299516246E-4 0.0 0.1458223457912472 6.216614352561762E-5 86-87 2.4089380616176828E-4 7.926183299516246E-4 0.0 0.14603215652564616 6.605152749596872E-5 88-89 2.486645741024705E-4 8.431283215661889E-4 0.0 0.1461137495890235 6.993691146631982E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17010 0.0 50.712994 1 GTATCAA 30675 0.0 35.14488 1 TCAACGC 37165 0.0 29.657505 4 ATCAACG 37645 0.0 29.268568 3 CAACGCA 38430 0.0 28.681273 5 TATCAAC 38835 0.0 28.460646 2 AACGCAG 39690 0.0 27.831535 6 ACGCAGA 45670 0.0 24.187292 7 CGCAGAG 46435 0.0 23.863155 8 TGGTATC 7850 0.0 22.494778 2 GTGGTAT 8155 0.0 22.12995 1 GCAGAGT 54155 0.0 20.437468 9 GAGTACT 33050 0.0 19.890665 12-13 CAGAGTA 53310 0.0 18.733839 10-11 CTTATAC 8945 0.0 18.630953 1 AGAGTAC 49680 0.0 17.953007 10-11 GTACTTT 36340 0.0 17.929937 14-15 TACATGG 36030 0.0 17.495111 2 GTACATG 35525 0.0 16.978151 1 ACATGGG 36185 0.0 16.823587 3 >>END_MODULE