##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139698_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9506646 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.467243126545366 31.0 25.0 33.0 18.0 33.0 2 31.013107777443274 33.0 31.0 33.0 27.0 33.0 3 31.115200881572743 33.0 31.0 33.0 27.0 34.0 4 31.888904456945173 33.0 32.0 33.0 29.0 34.0 5 32.332757420440394 33.0 33.0 34.0 31.0 34.0 6 35.90494944273722 38.0 36.0 38.0 31.0 38.0 7 36.207519770905535 38.0 37.0 38.0 33.0 38.0 8 36.46246962388207 38.0 37.0 38.0 34.0 38.0 9 36.6783105208714 38.0 38.0 38.0 34.0 38.0 10-11 36.703871533661825 38.0 38.0 38.0 34.0 38.0 12-13 36.747623715030514 38.0 38.0 38.0 34.0 38.0 14-15 36.76288561707252 38.0 38.0 38.0 34.0 38.0 16-17 36.75166257374052 38.0 38.0 38.0 34.0 38.0 18-19 36.758438833212054 38.0 38.0 38.0 34.5 38.0 20-21 36.78622887274929 38.0 38.0 38.0 35.0 38.0 22-23 36.76612754537729 38.0 38.0 38.0 34.5 38.0 24-25 36.769934184902965 38.0 38.0 38.0 34.5 38.0 26-27 36.738705159466974 38.0 38.0 38.0 34.5 38.0 28-29 36.658719339699175 38.0 38.0 38.0 34.0 38.0 30-31 36.687196024881544 38.0 38.0 38.0 34.0 38.0 32-33 36.68429469649949 38.0 38.0 38.0 34.0 38.0 34-35 36.66918234891644 38.0 38.0 38.0 34.0 38.0 36-37 36.641935843785674 38.0 38.0 38.0 34.0 38.0 38-39 36.62226577836417 38.0 38.0 38.0 34.0 38.0 40-41 36.63140160415877 38.0 38.0 38.0 34.0 38.0 42-43 36.607757225825225 38.0 38.0 38.0 34.0 38.0 44-45 36.54205592603164 38.0 38.0 38.0 34.0 38.0 46-47 36.41907888773565 38.0 38.0 38.0 34.0 38.0 48-49 36.36391916262427 38.0 38.0 38.0 33.5 38.0 50-51 36.369799434721685 38.0 38.0 38.0 34.0 38.0 52-53 36.37385097569757 38.0 38.0 38.0 34.0 38.0 54-55 36.297601560978265 38.0 38.0 38.0 33.0 38.0 56-57 36.31354958616578 38.0 38.0 38.0 33.0 38.0 58-59 36.25018628870341 38.0 38.0 38.0 33.0 38.0 60-61 36.2618196249094 38.0 38.0 38.0 33.0 38.0 62-63 36.278503097715 38.0 38.0 38.0 33.0 38.0 64-65 36.26556587323438 38.0 38.0 38.0 33.0 38.0 66-67 36.246934574505886 38.0 37.0 38.0 33.0 38.0 68-69 36.22458793664002 38.0 37.0 38.0 33.0 38.0 70-71 36.224582098989735 38.0 37.0 38.0 33.0 38.0 72-73 36.21497908839541 38.0 37.0 38.0 33.0 38.0 74-75 36.17560753776504 38.0 37.0 38.0 33.0 38.0 76-77 36.16822210805461 38.0 37.0 38.0 33.0 38.0 78-79 36.15629984840574 38.0 37.0 38.0 33.0 38.0 80-81 36.16484601435917 38.0 37.0 38.0 33.0 38.0 82-83 36.13508901259485 38.0 37.0 38.0 33.0 38.0 84-85 36.10046388107264 38.0 37.0 38.0 33.0 38.0 86-87 36.10091044309344 38.0 37.0 38.0 33.0 38.0 88-89 36.10814707366417 38.0 37.0 38.0 33.0 38.0 90-91 36.05779090647259 38.0 37.0 38.0 33.0 38.0 92-93 36.08076007955016 38.0 37.0 38.0 33.0 38.0 94-95 36.03616013228968 38.0 37.0 38.0 32.5 38.0 96-97 36.0611030700143 38.0 37.0 38.0 33.0 38.0 98-99 36.1055073536273 38.0 37.0 38.0 33.0 38.0 100-101 35.568402740049265 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 17.0 19 36.0 20 131.0 21 529.0 22 2139.0 23 6574.0 24 15056.0 25 28232.0 26 46315.0 27 69670.0 28 99363.0 29 133376.0 30 170457.0 31 215558.0 32 270721.0 33 351577.0 34 482760.0 35 751935.0 36 1582800.0 37 5279393.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.041703456718594 20.574995639892347 15.806058203913345 23.577242699475715 2 14.442748788584323 21.783013693788536 41.54936451825386 22.22487299937328 3 17.97984273317845 26.763035038855975 31.068412561065173 24.188709666900397 4 12.654704929582946 18.926075505493735 37.76133033669288 30.657889228230438 5 13.460404581629405 37.69940114138675 35.11982961084189 13.720364666141954 6 29.43351419627911 38.18696941066281 18.610927555312358 13.768588837745721 7 26.17217504766838 33.09520358179237 22.6366467213013 18.09597464923795 8 24.321711358559053 37.02910574349776 20.788025556016283 17.8611573419269 9 25.42626495190838 17.221615278406286 21.065547197192362 36.28657257249297 10-11 24.19416374607827 27.16852505079078 28.308921989942615 20.32838921318833 12-13 25.151200810001807 24.600312486670507 28.63116122295714 21.617325480370546 14-15 22.22693997441369 25.85852570927749 26.616079950804945 25.29845436550388 16-17 21.531132010174776 29.081660345825437 27.253165837878047 22.134041806121736 18-19 21.55154404613362 27.823850809212843 29.38362278347169 21.24098236118185 20-21 22.53441691827328 26.846145612840605 29.298791367822176 21.32064610106394 22-23 22.20607510206297 26.89458091823485 29.19031531875092 21.70902866095126 24-25 21.84771658522292 27.08892563166032 29.40583501630541 21.65752276681135 26-27 21.72324670067823 27.20690755942873 29.374096346967406 21.695749392925638 28-29 21.511638495948866 27.093459068526588 29.446303823062813 21.948598612461737 30-31 21.79591040467682 26.916470505345536 29.50114150264148 21.786477587336165 32-33 21.617397292684164 27.130495538505738 29.430647212411067 21.821459956399032 34-35 21.729155990562727 27.306647504582738 29.467630405939456 21.49656609891508 36-37 21.78465419540266 27.107316482211385 29.259270565178447 21.84875875720751 38-39 21.653165401934118 27.16070976263378 29.41566584736296 21.77045898806914 40-41 21.86640266037004 27.010491676003394 29.3807104215132 21.742395242113364 42-43 21.93078373418892 27.014168302134046 29.225171604088857 21.829876359588177 44-45 21.854220399891396 27.333170555783255 28.961872047549274 21.850736996776075 46-47 22.086270439192454 27.16371506737376 28.544781949739534 22.205232543694255 48-49 21.982581164626783 27.2774240263246 28.57222475403869 22.167770055009928 50-51 21.8324288360451 27.41914050572401 28.57655114014776 22.171879518083127 52-53 21.98690404675095 27.40747538242319 28.588898150484788 22.01672242034107 54-55 21.97644674207586 27.442173566826284 28.372855794009244 22.20852389708861 56-57 22.08525553976419 27.605356080564903 28.183459934197646 22.125928445473264 58-59 21.880015352903744 27.787868829251817 28.406657400277574 21.925458417566865 60-61 22.025163378340405 27.90739179720999 28.16195529466871 21.905489529780894 62-63 21.839518606431948 28.07099787090624 28.154768298759524 21.93471522390229 64-65 21.80052867993121 28.024636106341273 28.143652463905184 22.03118274982233 66-67 21.91830310810852 28.03658334546677 27.986749627118435 22.058363919306274 68-69 21.951971419419795 27.902821460165733 28.066552220935893 22.078654899478583 70-71 21.95553541166145 27.504894972410437 28.231832085598878 22.307737530329234 72-73 22.05565114439304 27.442260647755162 28.22269274655509 22.2793954612967 74-75 21.926215575597784 27.53697759270835 28.18811284013166 22.348693991562214 76-77 22.077108521855834 27.4875830666442 28.11223069121862 22.323077720281344 78-79 22.074773418918415 27.544195008798344 28.02268342162363 22.35834815065961 80-81 22.03961619609126 27.59317984907359 27.99677111480085 22.370432840034297 82-83 22.109750745204177 27.536776903764814 28.041229841606558 22.312242509424447 84-85 22.226757112542874 27.574158269549205 27.933684520812147 22.265400097095778 86-87 22.061801385736736 27.61646519163196 28.00327485152368 22.31845857110762 88-89 22.171893622065276 27.5734539547586 27.975033166576722 22.2796192565994 90-91 22.1521232480676 27.54293689127657 28.059065052108757 22.245874808547075 92-93 22.15237142386503 27.57718033790082 27.981699765865585 22.288748472368564 94-95 22.046514234688054 27.60290255712076 28.01639751757668 22.334185690614504 96-97 22.06458830702172 27.652976454696464 28.075391167048263 22.20704407123355 98-99 22.32145920953752 28.263320772989065 28.071078071462193 21.344141946011224 100-101 22.928848735543955 30.750891378867035 25.40995745344422 20.91030243214479 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3942.0 1 3691.5 2 3683.5 3 4174.0 4 5171.0 5 7338.5 6 9542.5 7 12660.0 8 16061.5 9 17306.0 10 16268.5 11 15018.5 12 16047.0 13 19868.0 14 28568.5 15 39593.0 16 47572.5 17 50983.0 18 49997.0 19 45646.5 20 40135.5 21 35184.5 22 33232.5 23 36113.5 24 43421.0 25 55675.5 26 72750.5 27 91324.0 28 110027.0 29 129962.5 30 149744.0 31 171289.5 32 195972.0 33 221505.5 34 246479.5 35 269645.0 36 294181.0 37 315442.5 38 329687.0 39 342465.5 40 357674.0 41 370356.0 42 376992.0 43 386452.5 44 406663.0 45 418449.0 46 413868.5 47 408768.5 48 401101.0 49 391802.5 50 381980.5 51 369267.0 52 352323.0 53 332210.5 54 312049.0 55 289864.5 56 265294.5 57 238358.0 58 211464.0 59 185542.0 60 157286.0 61 127737.0 62 99492.0 63 75532.5 64 56953.0 65 42480.5 66 30757.0 67 22614.0 68 16858.0 69 11897.0 70 8474.0 71 6046.5 72 4157.0 73 2771.0 74 1860.0 75 1193.0 76 745.0 77 458.0 78 316.0 79 217.0 80 133.0 81 85.0 82 61.5 83 47.5 84 38.0 85 26.0 86 13.0 87 4.0 88 1.5 89 1.5 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.05861162811784514 6 0.0 7 0.0036185211903335835 8 0.0 9 0.0 10-11 0.0 12-13 5.259478474322069E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.209306724551649E-5 28-29 5.263881817009887E-6 30-31 1.580918857442539E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 2.7342246176460293E-5 46-47 5.521307803468607E-6 48-49 0.0 50-51 0.0 52-53 8.213580276984585E-4 54-55 1.8829059583760243E-4 56-57 0.0028751404146700014 58-59 0.007587760947388471 60-61 0.003379875228806735 62-63 0.00578059810668896 64-65 0.0068545295677451545 66-67 0.005281746632150443 68-69 0.0039171409899289395 70-71 0.005381062456382527 72-73 0.003408670540257517 74-75 0.0028135610383581734 76-77 0.0024358430573031766 78-79 5.753056934744417E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.335533993531393E-5 88-89 0.0 90-91 1.500786753346652E-4 92-93 0.0 94-95 1.32776640479852E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 596.0 22-23 1158.0 24-25 1472.0 26-27 3117.0 28-29 7424.0 30-31 19408.0 32-33 24966.0 34-35 34155.0 36-37 53234.0 38-39 61571.0 40-41 62704.0 42-43 72221.0 44-45 86554.0 46-47 86423.0 48-49 78667.0 50-51 70658.0 52-53 62674.0 54-55 66928.0 56-57 68604.0 58-59 73762.0 60-61 75554.0 62-63 72382.0 64-65 80929.0 66-67 87255.0 68-69 86998.0 70-71 95582.0 72-73 73955.0 74-75 75214.0 76-77 79711.0 78-79 83023.0 80-81 84067.0 82-83 78919.0 84-85 78832.0 86-87 81151.0 88-89 85507.0 90-91 87366.0 92-93 86376.0 94-95 92727.0 96-97 144316.0 98-99 782379.0 100-101 6157968.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.00597115767381 #Duplication Level Percentage of deduplicated Percentage of total 1 89.64682166646212 76.20515136956406 2 7.217599635979674 12.270781329674502 3 1.7818246440662309 4.543972029045793 4 0.6363770157753874 2.1638338499363647 5 0.2944665569820699 1.2515707824858675 6 0.1398052890418637 0.713057062078975 7 0.07852584307276968 0.4672615885963115 8 0.05410585558525318 0.36794566394730377 9 0.03182705849901247 0.2434941015120586 >10 0.11563941971414252 1.507863686581481 >50 0.0024450894176616823 0.13734991682716027 >100 4.811414453079477E-4 0.06964091819864271 >500 6.0588834084430535E-5 0.03598369334771231 >1k 2.0195124304257313E-5 0.022094008203696013 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.1556870845932415E-5 0.0 0.0 1.0518956948644138E-5 5 0.0 3.1556870845932415E-5 0.0 0.0 1.0518956948644138E-5 6 0.0 3.1556870845932415E-5 0.0 0.0 2.1037913897288275E-5 7 0.0 4.207582779457655E-5 0.0 0.0 2.1037913897288275E-5 8 0.0 4.207582779457655E-5 0.0 0.0 3.1556870845932415E-5 9 0.0 1.5778435422966207E-4 0.0 1.0518956948644138E-5 3.1556870845932415E-5 10-11 0.0 1.5778435422966207E-4 0.0 1.5778435422966207E-5 3.1556870845932415E-5 12-13 0.0 1.5778435422966207E-4 0.0 2.1037913897288275E-5 3.1556870845932415E-5 14-15 0.0 2.0511966049856068E-4 0.0 2.6297392371610344E-5 3.681634932025448E-5 16-17 0.0 2.3141705287017103E-4 0.0 3.1556870845932415E-5 4.207582779457655E-5 18-19 0.0 2.5771444524178136E-4 0.0 3.681634932025448E-5 4.207582779457655E-5 20-21 0.0 2.840118376133917E-4 0.0 4.207582779457655E-5 4.207582779457655E-5 22-23 0.0 3.260876654079683E-4 0.0 5.785426321754276E-5 5.7854263217542765E-5 24-25 0.0 3.4712557930525654E-4 0.0 6.311374169186483E-5 8.41516555891531E-5 26-27 0.0 3.5764453625390067E-4 0.0 1.1044904796076345E-4 8.41516555891531E-5 28-29 0.0 3.5764453625390067E-4 0.0 5.469857613294952E-4 8.41516555891531E-5 30-31 0.0 3.9972036404847724E-4 0.0 0.002130088782100438 8.41516555891531E-5 32-33 0.0 3.9972036404847724E-4 0.0 0.0056276419675246134 8.41516555891531E-5 34-35 1.0518956948644138E-5 4.365367133687317E-4 0.0 0.010240204589505069 9.467061253779724E-5 36-37 1.0518956948644138E-5 4.733530626889862E-4 0.0 0.01728264626662232 9.467061253779724E-5 38-39 1.0518956948644138E-5 4.733530626889862E-4 0.0 0.02966871807365079 9.993009101211931E-5 40-41 1.0518956948644138E-5 5.049099335349186E-4 0.0 0.06256675593053533 1.1570852643508552E-4 42-43 1.0518956948644138E-5 5.31207325906529E-4 0.0 0.07455836685198966 1.209680049094076E-4 44-45 1.0518956948644138E-5 5.838021106497497E-4 0.0 0.090420953930545 1.3148696185805172E-4 46-47 1.0518956948644138E-5 6.1009950302136E-4 0.0 0.1080770231688442 1.367464403323738E-4 48-49 1.0518956948644138E-5 6.311374169186483E-4 0.0 0.1245234123580493 1.367464403323738E-4 50-51 1.0518956948644138E-5 6.995106370848352E-4 0.0 0.14126959182029075 1.367464403323738E-4 52-53 1.0518956948644138E-5 7.047701155591573E-4 0.0 0.16463219520322941 1.4200591880669588E-4 54-55 1.0518956948644138E-5 7.152890725078014E-4 0.0 0.2188994941012845 1.4726539728101795E-4 56-57 1.0518956948644138E-5 7.258080294564455E-4 0.0 0.2775689764823472 1.4726539728101795E-4 58-59 1.0518956948644138E-5 7.258080294564455E-4 0.0 0.3423236754582005 1.4726539728101795E-4 60-61 2.1037913897288275E-5 7.468459433537338E-4 0.0 0.3667697314068495 1.4726539728101795E-4 62-63 2.1037913897288275E-5 7.57364900302378E-4 0.0 0.3793819607882738 1.4726539728101795E-4 64-65 2.1037913897288275E-5 8.520355128401752E-4 0.0 0.3913946096236254 1.4726539728101795E-4 66-67 2.1037913897288275E-5 8.730734267374634E-4 0.0 0.397790135448401 1.4726539728101795E-4 68-69 2.1037913897288275E-5 9.046302975833959E-4 0.0 0.4041804017947024 1.4726539728101795E-4 70-71 2.1037913897288275E-5 9.256682114806842E-4 0.0 0.4100710176859431 1.4726539728101795E-4 72-73 2.1037913897288275E-5 9.414466469036503E-4 0.0 0.41465202343707763 1.683033111783062E-4 74-75 2.1037913897288275E-5 9.83522474698227E-4 0.0 0.41835469628300037 1.683033111783062E-4 76-77 2.1037913897288275E-5 0.0010203388240184815 0.0 0.4215629781523368 1.683033111783062E-4 78-79 2.1037913897288275E-5 0.0010361172594414475 0.0 0.42470814627998144 1.7356278965262827E-4 80-81 2.1037913897288275E-5 0.0010413767379157696 0.0 0.42607561068330513 1.840817466012724E-4 82-83 2.1037913897288275E-5 0.0010571551733387359 0.0 0.4265016284397252 1.893412250755945E-4 84-85 2.1037913897288275E-5 0.0010729336087617022 0.0 0.42691712723919667 1.9460070354991655E-4 86-87 2.1037913897288275E-5 0.0010729336087617022 0.0 0.42715380377054113 1.9986018202423862E-4 88-89 2.1037913897288275E-5 0.0011360473504535668 0.0 0.4271958795983357 2.1037913897288275E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15690 0.0 53.287254 1 GTATCAA 27780 0.0 37.072548 1 ATCAACG 35955 0.0 28.619606 3 TCAACGC 36125 0.0 28.496792 4 TATCAAC 36685 0.0 28.2371 2 CAACGCA 37110 0.0 27.728857 5 AACGCAG 38455 0.0 26.854116 6 GTGGTAT 6760 0.0 25.750816 1 TGGTATC 6565 0.0 25.274813 2 ACGCAGA 43670 0.0 23.539307 7 CGCAGAG 44150 0.0 23.282042 8 CTTATAC 11230 0.0 22.67871 1 GCAGAGT 50835 0.0 20.237219 9 TACATGG 38320 0.0 19.927376 2 GTACATG 38860 0.0 19.838032 1 TATACAC 14790 0.0 19.741978 3 GAGTACT 27800 0.0 19.443031 12-13 CAGAGTA 49475 0.0 18.810291 10-11 ACATGGG 39510 0.0 18.806293 3 AGAGTAC 47105 0.0 18.70155 10-11 >>END_MODULE