##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139697_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10888869 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.263808757364973 31.0 25.0 33.0 18.0 33.0 2 30.975660465747175 33.0 31.0 33.0 27.0 33.0 3 31.10591880570884 33.0 31.0 33.0 27.0 34.0 4 31.892158313227938 33.0 32.0 33.0 29.0 34.0 5 32.345704406949885 33.0 33.0 34.0 31.0 34.0 6 35.931782630500926 38.0 36.0 38.0 31.0 38.0 7 36.240303194023184 38.0 37.0 38.0 33.0 38.0 8 36.49358670767368 38.0 37.0 38.0 34.0 38.0 9 36.69578190352001 38.0 38.0 38.0 34.0 38.0 10-11 36.72413870531457 38.0 38.0 38.0 34.0 38.0 12-13 36.77300328436314 38.0 38.0 38.0 34.5 38.0 14-15 36.78467681078723 38.0 38.0 38.0 35.0 38.0 16-17 36.774636971020584 38.0 38.0 38.0 35.0 38.0 18-19 36.78090727328981 38.0 38.0 38.0 35.0 38.0 20-21 36.808222774930755 38.0 38.0 38.0 35.0 38.0 22-23 36.7859092585813 38.0 38.0 38.0 35.0 38.0 24-25 36.793358113201606 38.0 38.0 38.0 35.0 38.0 26-27 36.759992917001696 38.0 38.0 38.0 35.0 38.0 28-29 36.68497807974754 38.0 38.0 38.0 34.0 38.0 30-31 36.70858378799084 38.0 38.0 38.0 34.0 38.0 32-33 36.70356134382712 38.0 38.0 38.0 34.0 38.0 34-35 36.68771346785962 38.0 38.0 38.0 34.0 38.0 36-37 36.662038058365404 38.0 38.0 38.0 34.0 38.0 38-39 36.64002593543978 38.0 38.0 38.0 34.0 38.0 40-41 36.64998793817223 38.0 38.0 38.0 34.0 38.0 42-43 36.63001834537984 38.0 38.0 38.0 34.0 38.0 44-45 36.57221610858632 38.0 38.0 38.0 34.0 38.0 46-47 36.45496349461858 38.0 38.0 38.0 34.0 38.0 48-49 36.40822079461496 38.0 38.0 38.0 34.0 38.0 50-51 36.41735095407981 38.0 38.0 38.0 34.0 38.0 52-53 36.421748667540825 38.0 38.0 38.0 34.0 38.0 54-55 36.3454049122531 38.0 38.0 38.0 34.0 38.0 56-57 36.36668187341924 38.0 38.0 38.0 34.0 38.0 58-59 36.31056334747714 38.0 38.0 38.0 33.5 38.0 60-61 36.32568475101942 38.0 38.0 38.0 33.0 38.0 62-63 36.34473836516561 38.0 38.0 38.0 33.5 38.0 64-65 36.330663227264445 38.0 38.0 38.0 33.5 38.0 66-67 36.31292037894303 38.0 38.0 38.0 33.0 38.0 68-69 36.292552728758636 38.0 38.0 38.0 33.0 38.0 70-71 36.292670581272624 38.0 38.0 38.0 33.0 38.0 72-73 36.28313566602975 38.0 38.0 38.0 33.0 38.0 74-75 36.24785622352704 38.0 37.5 38.0 33.0 38.0 76-77 36.24264956453096 38.0 37.0 38.0 33.0 38.0 78-79 36.233004539643176 38.0 37.0 38.0 33.0 38.0 80-81 36.24128790529009 38.0 37.0 38.0 33.0 38.0 82-83 36.212564881556986 38.0 37.0 38.0 33.0 38.0 84-85 36.17975524346797 38.0 37.0 38.0 33.0 38.0 86-87 36.17949278793438 38.0 37.0 38.0 33.0 38.0 88-89 36.18653960929606 38.0 37.0 38.0 33.0 38.0 90-91 36.133896285601296 38.0 37.0 38.0 33.0 38.0 92-93 36.154973533926345 38.0 37.0 38.0 33.0 38.0 94-95 36.10945990644486 38.0 37.0 38.0 33.0 38.0 96-97 36.13622577958145 38.0 37.0 38.0 33.0 38.0 98-99 36.18431376077315 38.0 37.0 38.0 33.0 38.0 100-101 35.65246397212235 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 19.0 19 45.0 20 140.0 21 556.0 22 2319.0 23 7106.0 24 16124.0 25 30399.0 26 50835.0 27 77239.0 28 110226.0 29 148057.0 30 190831.0 31 240191.0 32 305394.0 33 395143.0 34 542762.0 35 845349.0 36 1781932.0 37 6144199.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.70315925372966 20.65928977564153 15.823810535327407 23.81374043530141 2 14.343133341029265 21.99384527447249 41.3926184620276 22.270402922470645 3 17.85045811461227 26.505516780484733 31.229460102789368 24.414565002113626 4 12.65937720437265 19.037597017651695 38.133391080377585 30.16963469759807 5 13.499122085118598 37.406635397189866 35.499490746883744 13.594751770807795 6 29.406043806026833 38.53994175886252 18.662189555625943 13.391824879484707 7 25.987872288916737 32.897578094663956 23.075125830558836 18.03942378586047 8 23.916156948898916 37.29486505898822 21.047254769985756 17.74172322212711 9 24.891648526582514 17.38834400524058 21.42713811691554 36.292869351261366 10-11 23.81612819476476 27.209933373245654 28.856316482455618 20.11762194953397 12-13 24.821381800201824 24.608788535226985 29.056982782783297 21.512846881787894 14-15 21.882750173594705 26.042116954478928 26.823855627246502 25.251277244679866 16-17 21.365152799615828 29.216514589348076 27.514441582500442 21.903891028535654 18-19 21.352690531955155 28.112873798004184 29.515834013615187 21.018601656425474 20-21 22.118586457973056 27.19656645202553 29.499382012059993 21.18546507794142 22-23 21.84026972676879 27.232476767974017 29.357075181923527 21.570178323333664 24-25 21.635155720302105 27.389601915890527 29.480199595506868 21.495042768300504 26-27 21.6729708246853 27.489617192084115 29.414753112499533 21.42265887073105 28-29 21.510618990532375 27.399672639626232 29.549984041009438 21.539724328831955 30-31 21.881848796065732 27.334284094294826 29.34821315031415 21.435653959325293 32-33 21.636468868727572 27.388360500095544 29.3758624910135 21.59930814016339 34-35 21.619496470151017 27.520461938044942 29.503630153734367 21.356411438069674 36-37 21.725777711782612 27.3865496696117 29.319724923899326 21.567947694706362 38-39 21.50646672738904 27.420691763743832 29.49127365931501 21.581567849552115 40-41 21.766239123031852 27.288476344478447 29.3800698687955 21.565214663694203 42-43 21.73429356085749 27.412119837536846 29.175604741109616 21.677981860496047 44-45 21.715993739572127 27.568996565013855 29.022768088925854 21.692241606488167 46-47 21.925449308891952 27.48073415639474 28.651533670042895 21.942282864670418 48-49 21.844102403414496 27.60366671879334 28.612598994223443 21.939631883568726 50-51 21.724455253943134 27.74070129717568 28.628671795662164 21.906171653219026 52-53 21.909645576649293 27.669487770730488 28.61180905759503 21.809057595025195 54-55 21.873024722973327 27.636909434169816 28.495647366645287 21.99441847621157 56-57 21.999745528564418 27.77877183286176 28.342283578668294 21.879199059905527 58-59 21.82291889310899 27.948038163204238 28.494366781655273 21.734676162031498 60-61 21.950136270569242 28.075828862605178 28.288124386228418 21.685910480597155 62-63 21.79071093260733 28.213552279327285 28.255318433749228 21.74041835431616 64-65 21.796272091833835 28.153734882495467 28.255787401778193 21.794205623892502 66-67 21.86745731281909 28.122440801253955 28.158885798740087 21.851216087186863 68-69 21.85140628779852 28.035889956311827 28.256832076090284 21.855871679799378 70-71 21.86780051434391 27.714986190450926 28.379683655135747 22.03752964006942 72-73 21.96640913064851 27.65776235516622 28.323449229020515 22.05237928516475 74-75 21.858621305732733 27.792287365199964 28.28992883051436 22.059162498552944 76-77 21.952719973159766 27.740454378526415 28.261296518742775 22.045529129571047 78-79 21.93824043009923 27.764447817196775 28.218006625642154 22.079305127061836 80-81 21.922444305851517 27.78830808627209 28.21036709336467 22.078880514511727 82-83 21.981112492645813 27.776310026387378 28.252487425067375 21.99009005589943 84-85 22.10019665475075 27.770507345566337 28.151646940826126 21.977649058856787 86-87 21.939481683614474 27.791846701949584 28.248454126502736 22.020217487933206 88-89 22.019581248016333 27.766843879730622 28.165964266027622 22.047610606225422 90-91 22.053561040919064 27.82965340224243 28.120995609878925 21.995789946959587 92-93 22.081856646757387 27.807188959951652 28.116310599049076 21.994643794241885 94-95 21.980840785298426 27.868023012419563 28.12814892146649 22.02298728081552 96-97 22.00006397825958 27.897677436848127 28.129589488067293 21.972669096825005 98-99 22.256761281772913 28.42792361017739 28.21707484631386 21.09824026173584 100-101 22.82352533881424 30.99818798226331 25.58417528804747 20.59411139087499 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2827.0 1 2769.0 2 3408.5 3 4381.5 4 5575.5 5 7947.5 6 10249.5 7 13504.5 8 16735.0 9 17970.0 10 17180.5 11 15883.5 12 16973.0 13 21230.5 14 30531.5 15 41969.5 16 50456.5 17 54302.0 18 53589.5 19 50067.5 20 45709.5 21 42185.5 22 42219.0 23 47660.5 24 58443.0 25 74671.5 26 95145.0 27 117847.0 28 141591.5 29 165573.0 30 187693.5 31 210653.5 32 237657.0 33 265936.0 34 291667.0 35 314981.0 36 339685.0 37 362359.5 38 380306.0 39 394305.5 40 408967.5 41 423415.0 42 432574.0 43 442767.5 44 462119.0 45 472574.0 46 465786.5 47 459258.5 48 452574.0 49 442076.0 50 429753.0 51 414294.5 52 393883.5 53 371229.5 54 346577.0 55 317928.5 56 288623.0 57 258682.5 58 227852.5 59 196693.0 60 164142.5 61 132921.0 62 104198.0 63 79894.5 64 60411.0 65 44542.0 66 32542.5 67 24316.0 68 18158.5 69 13102.5 70 9441.5 71 6792.0 72 4732.0 73 3134.0 74 2068.0 75 1326.5 76 831.5 77 526.0 78 336.0 79 207.5 80 134.5 81 98.0 82 68.5 83 48.5 84 37.5 85 24.5 86 17.0 87 15.0 88 10.0 89 6.0 90 4.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.05753581937664968 6 1.8367380487358236E-5 7 0.0038295988316141925 8 0.0 9 0.0 10-11 0.0 12-13 9.183690243679118E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.89070587104678E-5 28-29 1.8383283087990803E-5 30-31 2.3003760148626373E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 9.525618937806805E-6 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.205588707981841E-4 54-55 1.5374435448250594E-4 56-57 0.0029595801835509633 58-59 0.007621413348764343 60-61 0.003364654950314669 62-63 0.005779597508419613 64-65 0.0069480156699708055 66-67 0.0051301913795997 68-69 0.003728042069164448 70-71 0.005395706135370179 72-73 0.0032946526068307227 74-75 0.002873699549290047 76-77 0.0026977405519982107 78-79 8.288815028793133E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 4.601967490666203E-5 88-89 0.0 90-91 2.0575802667940877E-4 92-93 0.0 94-95 1.0223882580753338E-4 96-97 6.093167207597741E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 176.0 20-21 754.0 22-23 1414.0 24-25 1667.0 26-27 3666.0 28-29 8557.0 30-31 20512.0 32-33 26776.0 34-35 37010.0 36-37 56741.0 38-39 67056.0 40-41 67078.0 42-43 77168.0 44-45 91764.0 46-47 92341.0 48-49 84608.0 50-51 76539.0 52-53 73902.0 54-55 79161.0 56-57 82164.0 58-59 81648.0 60-61 80179.0 62-63 78462.0 64-65 87055.0 66-67 94135.0 68-69 93230.0 70-71 101751.0 72-73 81397.0 74-75 82878.0 76-77 87945.0 78-79 91572.0 80-81 91029.0 82-83 87142.0 84-85 87133.0 86-87 90977.0 88-89 94320.0 90-91 96380.0 92-93 93865.0 94-95 102212.0 96-97 161728.0 98-99 896590.0 100-101 7178187.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.68353981847608 #Duplication Level Percentage of deduplicated Percentage of total 1 89.66436747373486 75.93096033260498 2 7.1225005240731925 12.06317113474938 3 1.7561310601305051 4.461461836710727 4 0.6773013137445345 2.2942509108636577 5 0.2985354096650664 1.264051762579836 6 0.15257063807247603 0.7752133022604497 7 0.0970358432459885 0.5752137086738749 8 0.05879125859114784 0.3982921510305434 9 0.0356135327412176 0.2714292016170752 >10 0.1340972096188844 1.7220319597885534 >50 0.0025546781374911074 0.14095348161890692 >100 4.467136253970272E-4 0.06658393515989917 >500 3.623122037799335E-5 0.020893824278566772 >1k 1.8113398923307623E-5 0.015492458063595617 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.673476097471647E-5 0.0 0.0 0.0 3 0.0 3.673476097471647E-5 0.0 9.183690243679118E-6 0.0 4 0.0 4.591845121839559E-5 0.0 1.8367380487358236E-5 0.0 5 1.8367380487358236E-5 4.591845121839559E-5 0.0 1.8367380487358236E-5 0.0 6 7.346952194943294E-5 4.591845121839559E-5 0.0 1.8367380487358236E-5 1.8367380487358236E-5 7 7.346952194943294E-5 4.591845121839559E-5 0.0 1.8367380487358236E-5 3.673476097471647E-5 8 7.346952194943294E-5 4.591845121839559E-5 0.0 1.8367380487358236E-5 3.673476097471647E-5 9 7.346952194943294E-5 1.010205926804703E-4 0.0 5.510214146207471E-5 5.510214146207471E-5 10-11 7.346952194943294E-5 1.010205926804703E-4 0.0 7.80613670712725E-5 5.510214146207471E-5 12-13 7.346952194943294E-5 1.010205926804703E-4 0.0 9.183690243679118E-5 6.428583170575383E-5 14-15 1.010205926804703E-4 1.9285749511726148E-4 0.0 1.0561243780230986E-4 8.265321219311206E-5 16-17 1.2857166341150765E-4 2.020411853609406E-4 0.0 1.2857166341150765E-4 8.265321219311206E-5 18-19 1.2857166341150765E-4 2.1122487560461972E-4 0.0 1.5153088902070545E-4 9.183690243679118E-5 20-21 1.2857166341150765E-4 2.2040856584829883E-4 0.0 1.8826564999542192E-4 1.010205926804703E-4 22-23 1.3775535365518677E-4 2.479596365793362E-4 0.0 1.9744934023910104E-4 1.1479612804598898E-4 24-25 1.3775535365518677E-4 2.892862426758922E-4 0.0 2.2040856584829883E-4 1.3775535365518677E-4 26-27 1.469390438988659E-4 3.0765362316325046E-4 0.0 2.801025524322131E-4 1.3775535365518677E-4 28-29 1.7449011462990324E-4 3.1224546828509E-4 0.0 5.051029634023515E-4 1.3775535365518677E-4 30-31 1.8367380487358236E-4 3.811231451126834E-4 0.0 0.0011387775902162106 1.3775535365518677E-4 32-33 1.9285749511726148E-4 3.8571499023452296E-4 0.0 0.002736739692616377 1.469390438988659E-4 34-35 2.020411853609406E-4 4.4081713169659767E-4 0.0 0.004821437377931537 1.469390438988659E-4 36-37 2.020411853609406E-4 4.959192731586724E-4 0.0 0.007907157299807722 1.469390438988659E-4 38-39 2.020411853609406E-4 5.188784987678702E-4 0.0 0.012471451350916242 1.469390438988659E-4 40-41 2.020411853609406E-4 6.153072463265009E-4 0.0 0.017338807180066175 1.469390438988659E-4 42-43 2.020411853609406E-4 6.382664719356987E-4 0.0 0.022160244557997713 1.469390438988659E-4 44-45 2.020411853609406E-4 7.209196841288108E-4 0.0 0.027739336381032778 1.469390438988659E-4 46-47 2.020411853609406E-4 7.897973609564042E-4 0.0 0.03371332688454604 1.6530642438622413E-4 48-49 2.0663303048278016E-4 7.897973609564042E-4 0.0 0.03993986886976049 1.8367380487358236E-4 50-51 2.250004109701384E-4 8.586750377839975E-4 0.0 0.04605620657205078 1.8367380487358236E-4 52-53 2.2959225609197795E-4 8.678587280276767E-4 0.0 0.05191540094751806 1.8826564999542192E-4 54-55 2.341841012138175E-4 8.816342633931953E-4 0.0 0.05786184038030029 1.9285749511726148E-4 56-57 2.3877594633565707E-4 9.000016438805536E-4 0.0 0.06419399480331703 1.9744934023910104E-4 58-59 2.3877594633565707E-4 9.091853341242327E-4 0.0 0.07027818958975446 2.020411853609406E-4 60-61 2.479596365793362E-4 9.551037853426283E-4 0.0 0.0764128946725321 2.020411853609406E-4 62-63 2.571433268230153E-4 9.87246701195505E-4 0.0 0.08232259934433961 2.2040856584829883E-4 64-65 2.571433268230153E-4 0.001166328660947248 0.0 0.08782822164542525 2.2040856584829883E-4 66-67 2.571433268230153E-4 0.0011755123511909271 0.0 0.09383894690991323 2.2040856584829883E-4 68-69 2.571433268230153E-4 0.001198471576800125 0.0 0.09960630438294371 2.2040856584829883E-4 70-71 2.70918862188534E-4 0.0012168389572874833 0.0 0.10511651852915119 2.2040856584829883E-4 72-73 2.938780877977318E-4 0.0012352063377748415 0.0 0.10916193408149184 2.3877594633565707E-4 74-75 2.938780877977318E-4 0.0012673492536277183 0.0 0.11223847031312435 2.3877594633565707E-4 76-77 2.938780877977318E-4 0.0013040840146024348 0.0 0.11512674089476144 2.3877594633565707E-4 78-79 2.938780877977318E-4 0.001322451395089793 0.0 0.1174685819068996 2.3877594633565707E-4 80-81 2.938780877977318E-4 0.001322451395089793 0.0 0.11858899211662846 2.479596365793362E-4 82-83 2.9846993291957134E-4 0.0013270432402116327 0.0 0.11896093157149747 2.571433268230153E-4 84-85 3.030617780414109E-4 0.0013408187755771512 0.0 0.11933287102636647 2.571433268230153E-4 86-87 3.030617780414109E-4 0.0013500024658208304 0.0 0.11952113667636188 2.571433268230153E-4 88-89 3.030617780414109E-4 0.0014234719877702633 0.0 0.11957164697270212 2.571433268230153E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16035 0.0 46.39988 1 GTATCAA 28350 0.0 36.26439 1 TCAACGC 34515 0.0 29.53713 4 ATCAACG 34655 0.0 29.417807 3 CAACGCA 35265 0.0 28.84783 5 AACGCAG 36515 0.0 27.903296 6 TATCAAC 36875 0.0 27.868864 2 CTTATAC 8305 0.0 26.47132 1 ACGCAGA 41330 0.0 24.642103 7 CGCAGAG 41835 0.0 24.333225 8 GCAGAGT 48770 0.0 20.917253 9 GTGGTAT 8720 0.0 20.317507 1 TATACAC 12715 0.0 19.866726 3 TGGTATC 8400 0.0 19.859884 2 GAGTACT 30040 0.0 19.647005 12-13 AGAGTAC 43835 0.0 19.370522 10-11 CAGAGTA 47150 0.0 18.588816 10-11 TATGCCG 6965 0.0 17.895823 42-43 GTACATG 31055 0.0 17.87843 1 AGTACTT 32565 0.0 17.806137 12-13 >>END_MODULE