##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139696_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10917345 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.389773429345688 31.0 25.0 33.0 18.0 33.0 2 31.009166239593966 33.0 31.0 33.0 27.0 33.0 3 31.118537794674438 33.0 31.0 33.0 27.0 34.0 4 31.89310789390644 33.0 32.0 33.0 29.0 34.0 5 32.34696173840801 33.0 33.0 34.0 31.0 34.0 6 35.93155606972208 38.0 36.0 38.0 31.0 38.0 7 36.23145737356473 38.0 37.0 38.0 33.0 38.0 8 36.48507984313036 38.0 37.0 38.0 34.0 38.0 9 36.69269882008859 38.0 38.0 38.0 34.0 38.0 10-11 36.72403230822145 38.0 38.0 38.0 34.0 38.0 12-13 36.77003744958138 38.0 38.0 38.0 34.0 38.0 14-15 36.782272567185515 38.0 38.0 38.0 35.0 38.0 16-17 36.771288852738465 38.0 38.0 38.0 34.5 38.0 18-19 36.77595037987716 38.0 38.0 38.0 35.0 38.0 20-21 36.80274004242167 38.0 38.0 38.0 35.0 38.0 22-23 36.78019632273051 38.0 38.0 38.0 35.0 38.0 24-25 36.78634621478338 38.0 38.0 38.0 35.0 38.0 26-27 36.75362140140099 38.0 38.0 38.0 35.0 38.0 28-29 36.67776939457414 38.0 38.0 38.0 34.0 38.0 30-31 36.69903109529443 38.0 38.0 38.0 34.0 38.0 32-33 36.69844189693817 38.0 38.0 38.0 34.0 38.0 34-35 36.68541782355865 38.0 38.0 38.0 34.0 38.0 36-37 36.65933597663546 38.0 38.0 38.0 34.0 38.0 38-39 36.64760113453198 38.0 38.0 38.0 34.0 38.0 40-41 36.64864929191886 38.0 38.0 38.0 34.0 38.0 42-43 36.62656195917292 38.0 38.0 38.0 34.0 38.0 44-45 36.566298748466636 38.0 38.0 38.0 34.0 38.0 46-47 36.448171933095914 38.0 38.0 38.0 34.0 38.0 48-49 36.40217393166037 38.0 38.0 38.0 34.0 38.0 50-51 36.41147364459049 38.0 38.0 38.0 34.0 38.0 52-53 36.416082637737986 38.0 38.0 38.0 34.0 38.0 54-55 36.340076394434575 38.0 38.0 38.0 33.5 38.0 56-57 36.356876203902175 38.0 38.0 38.0 34.0 38.0 58-59 36.30302621337135 38.0 38.0 38.0 33.5 38.0 60-61 36.31454136457866 38.0 38.0 38.0 33.0 38.0 62-63 36.329967183864895 38.0 38.0 38.0 33.0 38.0 64-65 36.32066545382003 38.0 38.0 38.0 33.5 38.0 66-67 36.30251823133756 38.0 38.0 38.0 33.0 38.0 68-69 36.28152970812347 38.0 38.0 38.0 33.0 38.0 70-71 36.28330894836158 38.0 38.0 38.0 33.0 38.0 72-73 36.27289448248899 38.0 37.5 38.0 33.0 38.0 74-75 36.235757723926575 38.0 37.0 38.0 33.0 38.0 76-77 36.227502338412165 38.0 37.0 38.0 33.0 38.0 78-79 36.2163829381323 38.0 37.0 38.0 33.0 38.0 80-81 36.2257539579045 38.0 37.0 38.0 33.0 38.0 82-83 36.19502028412661 38.0 37.0 38.0 33.0 38.0 84-85 36.16253370043697 38.0 37.0 38.0 33.0 38.0 86-87 36.16313708734075 38.0 37.0 38.0 33.0 38.0 88-89 36.16804089300159 38.0 37.0 38.0 33.0 38.0 90-91 36.11455828405816 38.0 37.0 38.0 33.0 38.0 92-93 36.13524201803225 38.0 37.0 38.0 33.0 38.0 94-95 36.089928171056634 38.0 37.0 38.0 33.0 38.0 96-97 36.11621891654843 38.0 37.0 38.0 33.0 38.0 98-99 36.16382818116761 38.0 37.0 38.0 33.0 38.0 100-101 35.62217196511538 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 18.0 19 44.0 20 93.0 21 554.0 22 2463.0 23 7039.0 24 16405.0 25 30602.0 26 50947.0 27 77928.0 28 110502.0 29 148849.0 30 191778.0 31 242534.0 32 307510.0 33 399074.0 34 549222.0 35 851968.0 36 1788078.0 37 6141736.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.78608352122242 20.717866843999158 15.66302979341589 23.83301984136253 2 14.343899547005249 22.075486301843533 41.33185311996644 22.24876103118478 3 17.820349178302965 26.552820305669556 31.302372509066995 24.324458006960484 4 12.618745674887071 19.06763045410766 38.29712260627469 30.01650126473057 5 13.47933418844192 37.420752376409084 35.61088251697042 13.489030918178575 6 29.308023150317226 38.66121295974433 18.70910922023624 13.321654669702204 7 25.928091083589315 32.93458233279182 23.155361749857217 17.98196483376164 8 23.89019491460607 37.348183097630425 21.12839705990788 17.63322492785563 9 24.96026277451157 17.278275991094905 21.435184103827442 36.32627713056608 10-11 23.795515301568283 27.23895782353677 28.96505514848161 20.000471726413334 12-13 24.733095555709134 24.624543507310182 29.15030107827971 21.492059858700973 14-15 21.840058182644224 26.09684405869742 26.862025519940975 25.20107223871738 16-17 21.3511481042323 29.270243818437542 27.54807602031446 21.830532057015695 18-19 21.352865554766293 28.167819190471675 29.49692438958373 20.982390865178303 20-21 22.09221936518825 27.292780447720116 29.486982842209024 21.128017344882604 22-23 21.82019448805023 27.31589332851363 29.335043497565866 21.528868685870272 24-25 21.632394533236763 27.44262959980493 29.424450146172504 21.500525720785806 26-27 21.66979124425232 27.564437168042744 29.31875167600802 21.447019911696913 28-29 21.546340861975004 27.53740677811507 29.387264484541586 21.528987875368337 30-31 21.78115092452588 27.41388532927232 29.362055283125283 21.44290846307652 32-33 21.484887021264516 27.475390514479543 29.409406823427904 21.630315640828037 34-35 21.597683503307213 27.527745072176913 29.288575296097065 21.58599612841881 36-37 21.6287061888624 27.46384595243977 29.386923943041705 21.520523915656128 38-39 21.469975141691982 27.561767620867734 29.44709474455442 21.521162492885864 40-41 21.741039621329694 27.453639288588427 29.319915932152373 21.485405157929502 42-43 21.737604111954237 27.506967638119246 29.107817401309493 21.647610848617024 44-45 21.72128166507045 27.66389896689887 28.969942633434027 21.644876734596657 46-47 21.921561781765238 27.5812391318697 28.60376299311318 21.89343609325188 48-49 21.79787417340002 27.707827765474992 28.623453630382546 21.87084443074244 50-51 21.690979287809263 27.839046882835877 28.596089069534347 21.873884759820513 52-53 21.894783538987735 27.751082396971615 28.587113195500564 21.767020868540087 54-55 21.85216058769522 27.718520741723847 28.476590413302706 21.95272825727823 56-57 21.927333040876043 27.883093209238258 28.35059015528626 21.83898359459944 58-59 21.815907636864846 27.998464970957464 28.477092487156103 21.708534905021583 60-61 21.91902403214468 28.0723449644307 28.332874244584772 21.675756758839846 62-63 21.79709417927697 28.236339309967068 28.299497125219926 21.66706938553604 64-65 21.79832356790507 28.138912456276742 28.28857901381476 21.774184962003424 66-67 21.8432607725383 28.14698384187379 28.178323569556575 21.831431816031337 68-69 21.817783926853373 28.050783513546733 28.28597779256515 21.84545476703475 70-71 21.875532261057685 27.72785116095405 28.396535229432583 22.000081348555682 72-73 21.95057873368388 27.696560833585735 28.352588621060676 22.000271811669705 74-75 21.820782900029563 27.85447602434019 28.275808704106574 22.04893237152367 76-77 21.91280048486351 27.79129673486644 28.265350040117564 22.03055274015249 78-79 21.88521804359112 27.830909526868286 28.18815058910486 22.095721840435736 80-81 21.8994185321937 27.85580891900306 28.21059256976255 22.034179979040687 82-83 21.96754282660655 27.79901161165454 28.256910242348244 21.976535319390667 84-85 22.07087783335663 27.819321147404214 28.140975212178994 21.968825807060167 86-87 21.93946979037801 27.82922010395041 28.216580648256905 22.014729457414674 88-89 21.979281288781035 27.832312867990332 28.154554421555144 22.033851421673486 90-91 22.001197072719474 27.879891519088556 28.192976127832576 21.925935280359393 92-93 22.046391549994695 27.84480852349349 28.10871729964998 22.00008262686183 94-95 21.944983437622952 27.90878038000032 28.14386835791739 22.00236782445934 96-97 21.957522303435937 27.913934819594044 28.194536512134917 21.934006364835103 98-99 22.204279367678698 28.508512474968374 28.191581861170008 21.095626296182925 100-101 22.794096309565663 31.03261567137109 25.593835975735658 20.579452043327585 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2626.0 1 2529.5 2 3027.5 3 3906.5 4 5040.5 5 7295.0 6 9444.0 7 12379.0 8 15412.0 9 16548.0 10 15848.0 11 14771.0 12 15875.0 13 20015.5 14 28863.5 15 39774.5 16 47444.0 17 50813.0 18 50801.0 19 48052.5 20 44234.5 21 41266.0 22 41596.0 23 47326.5 24 58096.0 25 75094.5 26 97485.5 27 121284.5 28 145291.0 29 170517.5 30 194220.0 31 218008.5 32 244131.0 33 270780.0 34 296927.5 35 320277.0 36 345657.0 37 368468.0 38 384733.0 39 399574.5 40 414438.0 41 427983.0 42 437137.5 43 444808.5 44 452181.0 45 463163.0 46 467094.0 47 460732.5 48 453832.0 49 442075.5 50 428271.5 51 412197.0 52 390491.0 53 365535.0 54 339840.5 55 312986.0 56 285037.5 57 255796.0 58 226303.5 59 195256.0 60 161923.5 61 130662.0 62 102153.0 63 77848.0 64 58131.5 65 42680.5 66 31615.5 67 23800.5 68 17977.0 69 13276.5 70 9661.0 71 6955.5 72 4890.0 73 3343.0 74 2231.0 75 1467.5 76 956.0 77 583.5 78 367.5 79 233.5 80 156.5 81 100.0 82 66.5 83 53.0 84 38.0 85 29.0 86 23.0 87 16.0 88 7.5 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.05908029836924637 6 0.0 7 0.003114310301634692 8 0.0 9 0.0 10-11 0.0 12-13 1.373960427191776E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.163199655536998E-5 28-29 0.0 30-31 9.175910976412816E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.744763512920418E-6 46-47 0.0 48-49 0.0 50-51 0.0 52-53 8.627239105549417E-4 54-55 1.580163184439659E-4 56-57 0.0030164037110924366 58-59 0.007497912102488328 60-61 0.0034512701154773727 62-63 0.00594859293329607 64-65 0.00659357603624965 66-67 0.005179766172483411 68-69 0.0039363483560320685 70-71 0.005264076028086228 72-73 0.0033801489308594277 74-75 0.0028706046362099473 76-77 0.0023907133583695663 78-79 9.899063647569576E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.44350991495561E-5 88-89 0.0 90-91 1.8140979166958042E-4 92-93 0.0 94-95 7.783769284288401E-5 96-97 1.2134125772640459E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 651.0 22-23 1290.0 24-25 1505.0 26-27 3403.0 28-29 7725.0 30-31 19687.0 32-33 25824.0 34-35 35644.0 36-37 55623.0 38-39 64880.0 40-41 65283.0 42-43 75642.0 44-45 90901.0 46-47 90924.0 48-49 83466.0 50-51 76435.0 52-53 73355.0 54-55 79389.0 56-57 82311.0 58-59 82177.0 60-61 80925.0 62-63 78098.0 64-65 86372.0 66-67 93488.0 68-69 93036.0 70-71 99751.0 72-73 82633.0 74-75 83682.0 76-77 88420.0 78-79 92497.0 80-81 92558.0 82-83 87601.0 84-85 87277.0 86-87 90902.0 88-89 95493.0 90-91 97313.0 92-93 95413.0 94-95 103555.0 96-97 163416.0 98-99 896839.0 100-101 7211846.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.72578211492487 #Duplication Level Percentage of deduplicated Percentage of total 1 90.23082676980913 77.35108195718188 2 6.901393918605679 11.832547827113162 3 1.6070867408510534 4.1330630335794645 4 0.5819708595211398 1.9955962840217913 5 0.26986785736157065 1.1567316569999815 6 0.13292902573867216 0.683726681833359 7 0.07756114072225637 0.46542926150988234 8 0.04898665427086114 0.3359535400450397 9 0.031019618425568996 0.23932629453945925 >10 0.11523315449517946 1.5353621458040327 >50 0.002523885640579985 0.13998978347166346 >100 5.312966228824992E-4 0.0732328471633392 >500 5.180889115898698E-5 0.03647804902967841 >1k 1.7269044230495534E-5 0.021480637707259043 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.747920854383552E-5 0.0 0.0 0.0 3 0.0 3.6638944725114026E-5 0.0 0.0 0.0 4 0.0 3.6638944725114026E-5 0.0 0.0 0.0 5 0.0 3.6638944725114026E-5 0.0 0.0 0.0 6 0.0 3.6638944725114026E-5 0.0 0.0 0.0 7 0.0 5.495841708767104E-5 0.0 9.159736181278507E-6 0.0 8 0.0 5.495841708767104E-5 0.0 9.159736181278507E-6 0.0 9 0.0 1.282363065378991E-4 0.0 9.159736181278507E-6 0.0 10-11 0.0 1.282363065378991E-4 0.0 2.747920854383552E-5 0.0 12-13 0.0 1.3281617462853837E-4 0.0 4.579868090639253E-5 9.159736181278507E-6 14-15 0.0 2.1067393216940566E-4 0.0 5.953828517831029E-5 2.747920854383552E-5 16-17 0.0 2.2899340453196268E-4 0.0 6.411815326894955E-5 2.747920854383552E-5 18-19 0.0 2.473128768945197E-4 0.0 6.86980213595888E-5 4.579868090639253E-5 20-21 0.0 2.564726130757982E-4 0.0 8.701749372214582E-5 4.579868090639253E-5 22-23 9.159736181278507E-6 3.114310301634692E-4 0.0 1.2365643844725985E-4 5.953828517831029E-5 24-25 9.159736181278507E-6 3.43490106797944E-4 0.0 1.6487525126301315E-4 7.327788945022805E-5 26-27 9.159736181278507E-6 3.480699748885833E-4 0.0 2.0609406407876642E-4 7.327788945022805E-5 28-29 9.159736181278507E-6 3.480699748885833E-4 0.0 4.442472047920076E-4 8.243762563150656E-5 30-31 9.159736181278507E-6 3.847089196136973E-4 0.0 0.0011541267588410919 8.701749372214582E-5 32-33 1.8319472362557013E-5 3.8928878770433655E-4 0.0 0.002569305998848621 1.0075709799406357E-4 34-35 2.747920854383552E-5 4.259277324294506E-4 0.0 0.004511170069279665 1.0075709799406357E-4 36-37 2.747920854383552E-5 4.5798680906392535E-4 0.0 0.007327788945022805 1.0533696608470283E-4 38-39 2.747920854383552E-5 4.5798680906392535E-4 0.0 0.01195803558465909 1.0991683417534208E-4 40-41 2.747920854383552E-5 5.083653580609572E-4 0.0 0.01644172644539492 1.373960427191776E-4 42-43 2.747920854383552E-5 5.450043027860711E-4 0.0 0.02133760543428828 1.373960427191776E-4 44-45 2.747920854383552E-5 6.228620603269384E-4 0.0 0.026476217431985524 1.4197591080981686E-4 46-47 2.747920854383552E-5 6.68660741233331E-4 0.0 0.032439205685997834 1.465557789004561E-4 48-49 2.747920854383552E-5 6.732406093239703E-4 0.0 0.038301436842016076 1.465557789004561E-4 50-51 2.747920854383552E-5 7.785775754086731E-4 0.0 0.044392661402566286 1.465557789004561E-4 52-53 2.747920854383552E-5 7.785775754086731E-4 0.0 0.05070829949955781 1.9235445980684862E-4 54-55 2.747920854383552E-5 7.877373115899516E-4 0.0 0.05690486102619273 2.4273300880388044E-4 56-57 2.747920854383552E-5 8.060567839525086E-4 0.0 0.06303730439955868 2.473128768945197E-4 58-59 2.747920854383552E-5 8.243762563150657E-4 0.0 0.0691422685643808 2.473128768945197E-4 60-61 2.747920854383552E-5 8.747548053120973E-4 0.0 0.075347989827197 2.473128768945197E-4 62-63 2.747920854383552E-5 9.068138819465722E-4 0.0 0.08075223417415131 2.473128768945197E-4 64-65 2.747920854383552E-5 0.0010533696608470283 0.0 0.08611067984019924 2.473128768945197E-4 66-67 2.747920854383552E-5 0.0010625293970283067 0.0 0.09186299416204215 2.5189274498515894E-4 68-69 2.747920854383552E-5 0.0010716891332095853 0.0 0.09749165204543778 2.564726130757982E-4 70-71 2.747920854383552E-5 0.0010808488693908637 0.0 0.10264400364740695 2.6105248116643743E-4 72-73 2.747920854383552E-5 0.0010900086055721423 0.0 0.10664680835862567 2.656323492570767E-4 74-75 2.747920854383552E-5 0.0011174878141159779 0.0 0.10993057377961399 2.702122173477159E-4 76-77 3.205907663447477E-5 0.0011449670226598135 0.0 0.1129761860598891 2.747920854383552E-4 78-79 4.121881281575328E-5 0.0011541267588410919 0.0 0.11579738480372288 2.747920854383552E-4 80-81 4.579868090639253E-5 0.0011541267588410919 0.0 0.11703852905628612 2.747920854383552E-4 82-83 4.579868090639253E-5 0.0011541267588410919 0.0 0.11749651586535005 2.839518216196337E-4 84-85 4.579868090639253E-5 0.0011541267588410919 0.0 0.11790412412541694 2.839518216196337E-4 86-87 4.579868090639253E-5 0.0011907657035662058 0.0 0.11802320069577356 2.839518216196337E-4 88-89 4.579868090639253E-5 0.0012365643844725984 0.0 0.11809647858522379 2.931115578009122E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14865 0.0 52.45438 1 GTATCAA 26225 0.0 35.771126 1 TCAACGC 32895 0.0 28.399885 4 ATCAACG 33110 0.0 28.202435 3 CAACGCA 33790 0.0 27.673193 5 TATCAAC 34585 0.0 27.224224 2 AACGCAG 35030 0.0 26.763895 6 CTTATAC 7815 0.0 24.129091 1 ACGCAGA 39895 0.0 23.478548 7 CGCAGAG 40330 0.0 23.203176 8 GTGGTAT 7215 0.0 20.812845 1 TGGTATC 6710 0.0 20.642916 2 GCAGAGT 47105 0.0 19.93916 9 GAGTACT 29165 0.0 19.702494 12-13 TATACAC 12975 0.0 19.12269 3 AGAGTAC 42945 0.0 18.802916 10-11 CAGAGTA 46130 0.0 18.640505 10-11 GTACATG 31225 0.0 18.36585 1 TACATGG 30785 0.0 18.22186 2 ACATGGG 31030 0.0 17.63299 3 >>END_MODULE