##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139695_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14556142 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.38331434249542 31.0 25.0 33.0 18.0 33.0 2 31.009413826823067 33.0 31.0 33.0 27.0 33.0 3 31.128894180889414 33.0 31.0 33.0 27.0 34.0 4 31.89762891843182 33.0 32.0 33.0 29.0 34.0 5 32.345981716858766 33.0 33.0 34.0 31.0 34.0 6 35.93389883116007 38.0 36.0 38.0 31.0 38.0 7 36.23491671076031 38.0 37.0 38.0 33.0 38.0 8 36.488089426442805 38.0 37.0 38.0 34.0 38.0 9 36.693812343957624 38.0 38.0 38.0 34.0 38.0 10-11 36.72034303457606 38.0 38.0 38.0 34.0 38.0 12-13 36.76874689735783 38.0 38.0 38.0 34.0 38.0 14-15 36.779896280209414 38.0 38.0 38.0 35.0 38.0 16-17 36.76724275566974 38.0 38.0 38.0 34.5 38.0 18-19 36.77269605503986 38.0 38.0 38.0 34.5 38.0 20-21 36.80045083743752 38.0 38.0 38.0 35.0 38.0 22-23 36.77819194699572 38.0 38.0 38.0 35.0 38.0 24-25 36.78242856188836 38.0 38.0 38.0 35.0 38.0 26-27 36.75065678270417 38.0 38.0 38.0 34.5 38.0 28-29 36.674343675257674 38.0 38.0 38.0 34.0 38.0 30-31 36.69933806763639 38.0 38.0 38.0 34.0 38.0 32-33 36.693205788017345 38.0 38.0 38.0 34.0 38.0 34-35 36.674993207810864 38.0 38.0 38.0 34.0 38.0 36-37 36.649905754845214 38.0 38.0 38.0 34.0 38.0 38-39 36.6274286660438 38.0 38.0 38.0 34.0 38.0 40-41 36.639575562060486 38.0 38.0 38.0 34.0 38.0 42-43 36.618820007657746 38.0 38.0 38.0 34.0 38.0 44-45 36.55939894121627 38.0 38.0 38.0 34.0 38.0 46-47 36.44047897622099 38.0 38.0 38.0 34.0 38.0 48-49 36.39336285028773 38.0 38.0 38.0 34.0 38.0 50-51 36.39952829731973 38.0 38.0 38.0 34.0 38.0 52-53 36.4025870068355 38.0 38.0 38.0 34.0 38.0 54-55 36.327034072749186 38.0 38.0 38.0 33.0 38.0 56-57 36.346912477870944 38.0 38.0 38.0 34.0 38.0 58-59 36.290331089725356 38.0 38.0 38.0 33.5 38.0 60-61 36.302054111918274 38.0 38.0 38.0 33.0 38.0 62-63 36.31831640986546 38.0 38.0 38.0 33.0 38.0 64-65 36.30668731146778 38.0 38.0 38.0 33.0 38.0 66-67 36.286510483721955 38.0 38.0 38.0 33.0 38.0 68-69 36.26755280402195 38.0 37.5 38.0 33.0 38.0 70-71 36.26660635246573 38.0 37.0 38.0 33.0 38.0 72-73 36.254861666967706 38.0 37.0 38.0 33.0 38.0 74-75 36.21809067971756 38.0 37.0 38.0 33.0 38.0 76-77 36.21101443961709 38.0 37.0 38.0 33.0 38.0 78-79 36.19979031710728 38.0 37.0 38.0 33.0 38.0 80-81 36.2076325255199 38.0 37.0 38.0 33.0 38.0 82-83 36.17809952224512 38.0 37.0 38.0 33.0 38.0 84-85 36.14639802896659 38.0 37.0 38.0 33.0 38.0 86-87 36.14740601163456 38.0 37.0 38.0 33.0 38.0 88-89 36.15436031564478 38.0 37.0 38.0 33.0 38.0 90-91 36.1009939783642 38.0 37.0 38.0 33.0 38.0 92-93 36.12276590792651 38.0 37.0 38.0 33.0 38.0 94-95 36.0776555959996 38.0 37.0 38.0 33.0 38.0 96-97 36.10543167583385 38.0 37.0 38.0 33.0 38.0 98-99 36.15335677723381 38.0 37.0 38.0 33.0 38.0 100-101 35.61083109332175 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 35.0 19 60.0 20 165.0 21 872.0 22 3394.0 23 9630.0 24 22299.0 25 41612.0 26 69088.0 27 105284.0 28 149725.0 29 199966.0 30 257761.0 31 326193.0 32 412736.0 33 534112.0 34 733899.0 35 1140986.0 36 2389512.0 37 8158805.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.65262224015127 20.746740448121486 15.799777166229898 23.800860145497342 2 14.34825931211718 21.97361086474699 41.42572255752932 22.252407265606504 3 17.79500364863162 26.545303006799465 31.310130115520995 24.349563229047916 4 12.61622069913855 19.091130053554025 38.04560988756499 30.247039359742438 5 13.463748709410886 37.45187872655458 35.55989227103815 13.52448029299638 6 29.399026198013186 38.489924047182285 18.65716891192735 13.453880842877187 7 25.977773168647694 32.941817579990065 22.98026381643803 18.100145434924208 8 23.942401771018723 37.340780269936914 21.052886128755823 17.663931830288547 9 24.930424558925026 17.298876309395716 21.411799912366888 36.35889921931237 10-11 23.830229191223886 27.20422073376311 28.8611158093951 20.10443426561791 12-13 24.758809717574888 24.595088451321786 29.079673034242177 21.566428796861146 14-15 21.860462751737376 26.044346091155195 26.754747240031048 25.340443917076378 16-17 21.378810401822133 29.254503013229744 27.448457839996337 21.918228744951787 18-19 21.38459490158862 28.109223584106285 29.43546098959463 21.070720524710463 20-21 22.09226394984386 27.171494767799505 29.474775254939157 21.261466027417477 22-23 21.82684601339432 27.259636508544503 29.322671237935577 21.590846240125593 24-25 21.63371070988857 27.397043163098445 29.451107022955764 21.51813910405722 26-27 21.61118040515072 27.467301649548652 29.423379778037084 21.498138167263544 28-29 21.418435727455545 27.364301339708074 29.583127521991102 21.634135410845275 30-31 21.7529663165607 27.228580980781942 29.32983623121 21.688616471447357 32-33 21.69311806268693 27.36862746085114 29.460302011084426 21.477952465377502 34-35 21.772816901992723 27.543301746035915 29.361121213084967 21.322760138886395 36-37 21.588230648268482 27.4053402313334 29.31545233355084 21.690976786847273 38-39 21.47961723675956 27.439349480986724 29.495766681154013 21.5852666010997 40-41 21.73374939013047 27.305489352292234 29.399130211971343 21.561631045605957 42-43 21.739753635050914 27.353504487234666 29.221422743575847 21.68531913413857 44-45 21.687798382254776 27.57773139217003 29.03098814120656 21.703482084368638 46-47 21.96295819354823 27.439193143310675 28.635425383322232 21.962423279818864 48-49 21.822729505161124 27.564929887554463 28.62429282506294 21.988047782221475 50-51 21.68975147798396 27.701988890665298 28.64415223199198 21.964107399358763 52-53 21.89328391411065 27.63589771638259 28.68984585825099 21.780972511255765 54-55 21.87319119513127 27.640893056921602 28.50495430658552 21.980961441361604 56-57 21.92309302556235 27.85483188600501 28.344087392097777 21.877987696334863 58-59 21.76855237093185 28.04007476445375 28.519966581414764 21.671406283199637 60-61 21.968693593035525 28.174233919720805 28.244668840755367 21.612403646488307 62-63 21.787749424748217 28.366183221779373 28.22508960842115 21.620977745051256 64-65 21.790515994711424 28.276817232803097 28.184745612872707 21.747921159612773 66-67 21.80735655110571 28.24149528768186 28.138192199854196 21.81295596135823 68-69 21.79066184682796 28.120733013162003 28.231664352943888 21.85694078706615 70-71 21.860835513899797 27.767898387913746 28.35816803890617 22.013098059280285 72-73 21.946021567148236 27.708261836219663 28.32830460545694 22.017411991175166 74-75 21.843697321341786 27.850815800989277 28.289404248667697 22.01608262900124 76-77 21.99062517924326 27.74083471512353 28.238802106781346 22.02973799885186 78-79 21.903835790301247 27.772262699054824 28.208670028236277 22.11523148240765 80-81 21.925575097485467 27.805172978502302 28.210618523407412 22.058633400604823 82-83 21.97928201302193 27.801483458638266 28.24712790731733 21.972106621022476 84-85 22.049391426204874 27.795350681743823 28.137640905317824 22.017616986733483 86-87 21.93946502693656 27.827162892102976 28.21334867271815 22.020023408242313 88-89 22.001564369330815 27.79616271956522 28.137925590753266 22.064347320350702 90-91 22.03576776500275 27.852079207330327 28.137688802184968 21.97446422548196 92-93 22.06167110576586 27.778645493804333 28.139738053235487 22.01994534719432 94-95 21.97270721115646 27.888094488163546 28.113342484336883 22.02585581634311 96-97 22.02962001383384 27.895037317785555 28.130860619630795 21.944482048749812 98-99 22.2466531707567 28.4448922765818 28.207836388353098 21.1006181643084 100-101 22.816385339954238 30.969275331595263 25.591848150110465 20.622491178340034 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4343.0 1 4074.5 2 4503.0 3 5557.5 4 7079.5 5 10297.5 6 13439.5 7 17698.5 8 22178.5 9 23823.0 10 22645.0 11 21056.5 12 22597.5 13 28248.5 14 40709.5 15 56244.5 16 67165.5 17 71731.0 18 70816.5 19 66136.5 20 60590.5 21 56431.0 22 56645.0 23 63553.5 24 77071.5 25 97935.0 26 125053.0 27 154122.0 28 185054.5 29 218307.5 30 250252.0 31 284042.0 32 320163.0 33 356381.0 34 391443.0 35 423373.0 36 457752.0 37 488389.5 38 512154.5 39 532919.0 40 551479.5 41 568216.0 42 578816.0 43 587892.0 44 599281.5 45 619654.0 46 627423.5 47 616734.5 48 606433.5 49 589367.5 50 570038.5 51 548422.0 52 518903.5 53 487905.5 54 457327.5 55 420824.0 56 382295.0 57 344852.0 58 306540.0 59 264380.5 60 218027.0 61 174986.5 62 137377.0 63 105186.0 64 78676.0 65 57923.0 66 42598.0 67 31992.5 68 24273.0 69 18017.0 70 13075.0 71 9269.5 72 6457.0 73 4217.0 74 2755.0 75 1809.0 76 1107.5 77 656.0 78 419.0 79 268.5 80 171.0 81 111.0 82 81.0 83 59.0 84 39.0 85 26.5 86 20.0 87 14.5 88 8.5 89 4.0 90 3.5 91 3.0 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.05854573279101015 6 0.0 7 0.0033731465384165666 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 7.216334151734353E-5 28-29 3.094044833465959E-5 30-31 3.44135103311939E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.067644686140221E-5 46-47 0.0 48-49 0.0 50-51 3.649320449091213E-6 52-53 8.527580842936663E-4 54-55 1.5549635175940421E-4 56-57 0.002999966642161964 58-59 0.0077415935810828855 60-61 0.003269408557544151 62-63 0.005647708414588447 64-65 0.006580792782362273 66-67 0.0050738432911593455 68-69 0.003749717592024123 70-71 0.005204403338398291 72-73 0.0031383831523565824 74-75 0.00280546879383545 76-77 0.002524661819915137 78-79 5.774708254520596E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 4.7213052159864085E-5 88-89 0.0 90-91 1.5347786768024036E-4 92-93 0.0 94-95 8.97097772084596E-5 96-97 9.08865303935237E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 890.0 22-23 1789.0 24-25 2162.0 26-27 4874.0 28-29 10769.0 30-31 26638.0 32-33 34558.0 34-35 48241.0 36-37 73564.0 38-39 86267.0 40-41 87301.0 42-43 100257.0 44-45 119971.0 46-47 121572.0 48-49 110567.0 50-51 100079.0 52-53 95873.0 54-55 103727.0 56-57 107967.0 58-59 108330.0 60-61 107736.0 62-63 105610.0 64-65 117381.0 66-67 128213.0 68-69 125579.0 70-71 140321.0 72-73 108046.0 74-75 109955.0 76-77 115698.0 78-79 121279.0 80-81 120641.0 82-83 115617.0 84-85 115916.0 86-87 119040.0 88-89 125233.0 90-91 128220.0 92-93 125986.0 94-95 136327.0 96-97 217480.0 98-99 1200402.0 100-101 9625897.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.11848758416927 #Duplication Level Percentage of deduplicated Percentage of total 1 89.44691987374411 75.24139618841727 2 7.270002993226401 12.23083313045177 3 1.7949437274031639 4.529638549435368 4 0.6691480754278794 2.2515089629940332 5 0.3047760577502896 1.28186505149099 6 0.15750810935913892 0.7949606364919622 7 0.10030227192574803 0.5906092790955003 8 0.061488408541851475 0.41378495443984487 9 0.041760052347418065 0.3161513200410491 >10 0.14828266607501187 1.9649660047512019 >50 0.003804222698158889 0.207409818618906 >100 0.0010197960128282694 0.13621450459611545 >500 1.4582413715414627E-5 0.009592407590866481 >1k 2.9163074283885316E-5 0.031069191585119175 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.869952216734352E-6 2 0.0 2.0609856650203057E-5 0.0 6.869952216734352E-6 1.3739904433468704E-5 3 0.0 2.0609856650203057E-5 0.0 1.3739904433468704E-5 1.3739904433468704E-5 4 0.0 6.182956995060916E-5 0.0 1.3739904433468704E-5 1.3739904433468704E-5 5 0.0 6.182956995060916E-5 0.0 2.7479808866937408E-5 1.3739904433468704E-5 6 0.0 6.182956995060916E-5 0.0 3.434976108367176E-5 2.0609856650203057E-5 7 6.869952216734352E-6 6.182956995060916E-5 0.0 4.121971330040611E-5 3.434976108367176E-5 8 6.869952216734352E-6 6.182956995060916E-5 0.0 4.121971330040611E-5 4.121971330040611E-5 9 6.869952216734352E-6 1.0304928325101528E-4 0.0 4.121971330040611E-5 4.808966551714046E-5 10-11 6.869952216734352E-6 1.0304928325101528E-4 0.0 6.182956995060916E-5 4.808966551714046E-5 12-13 6.869952216734352E-6 1.0991923546774963E-4 0.0 7.556947438407787E-5 4.808966551714046E-5 14-15 6.869952216734352E-6 2.0953354261039772E-4 0.0 9.617933103428092E-5 6.869952216734352E-5 16-17 6.869952216734352E-6 2.1983847093549926E-4 0.0 1.0304928325101528E-4 8.243942660081223E-5 18-19 6.869952216734352E-6 2.404483275857023E-4 0.0 1.1678918768448398E-4 9.617933103428092E-5 20-21 6.869952216734352E-6 2.610581842359054E-4 0.0 1.2365913990121833E-4 1.0648425935938245E-4 22-23 6.869952216734352E-6 3.297577064032489E-4 0.0 1.3739904433468703E-4 1.3396406822631986E-4 24-25 6.869952216734352E-6 3.641074674869206E-4 0.0 1.6831382930999162E-4 1.6487885320162445E-4 26-27 6.869952216734352E-6 3.70977419703655E-4 0.0 2.267084231522336E-4 1.717488054183588E-4 28-29 6.869952216734352E-6 3.70977419703655E-4 0.0 4.259370374375298E-4 1.717488054183588E-4 30-31 1.3739904433468704E-5 4.4998187019610003E-4 0.0 0.0011644569007364725 1.717488054183588E-4 32-33 1.3739904433468704E-5 4.568518224128344E-4 0.0 0.002593406961817218 1.7861875763509313E-4 34-35 1.3739904433468704E-5 5.324212967969123E-4 0.0 0.004595998032995281 1.9235866206856184E-4 36-37 1.3739904433468704E-5 6.079907711809901E-4 0.0 0.007649691793333701 1.9579363817692904E-4 38-39 1.3739904433468704E-5 6.182956995060917E-4 0.0 0.012197600160811842 1.992286142852962E-4 40-41 1.3739904433468704E-5 6.869952216734352E-4 0.0 0.01719892537459445 2.0609856650203055E-4 42-43 1.3739904433468704E-5 7.076050783236382E-4 0.0 0.021997586997983393 2.0609856650203055E-4 44-45 1.3739904433468704E-5 8.037844093579192E-4 0.0 0.027280580252652113 2.0609856650203055E-4 46-47 1.3739904433468704E-5 8.79353883741997E-4 0.0 0.03311660466076795 2.0609856650203055E-4 48-49 1.3739904433468704E-5 8.79353883741997E-4 0.0 0.03929612667972049 2.1983847093549926E-4 50-51 1.3739904433468704E-5 9.824031669930123E-4 0.0 0.04551686841197344 2.1983847093549926E-4 52-53 1.3739904433468704E-5 9.892731192097466E-4 0.0 0.05168265052649253 2.3357837536896797E-4 54-55 1.3739904433468704E-5 9.995780475348481E-4 0.0 0.05782438780825304 2.507532559108038E-4 56-57 1.3739904433468704E-5 0.0010304928325101529 0.0 0.06416535370429885 2.54188232019171E-4 58-59 1.3739904433468704E-5 0.0010407977608352544 0.0 0.07073989797571362 2.54188232019171E-4 60-61 1.3739904433468704E-5 0.0010648425935938246 0.0 0.07666179678653863 2.54188232019171E-4 62-63 1.3739904433468704E-5 0.0010854524502440276 0.0 0.08270391976115649 2.54188232019171E-4 64-65 1.3739904433468704E-5 0.0011781968051699414 0.0 0.08856055402592253 2.54188232019171E-4 66-67 1.3739904433468704E-5 0.0011816317812783086 0.0 0.09466794154659935 2.6449316034427256E-4 68-69 1.3739904433468704E-5 0.001209111590145246 0.0 0.10076502413895111 2.6792813645263973E-4 70-71 1.3739904433468704E-5 0.001229721446795449 0.0 0.10608580213081187 2.816680408861084E-4 72-73 1.3739904433468704E-5 0.0012365913990121833 0.0 0.11025586312636962 3.0914784975304583E-4 74-75 1.3739904433468704E-5 0.0012743761362042222 0.0 0.11374579885247066 3.0914784975304583E-4 76-77 1.3739904433468704E-5 0.0013568155628050345 0.0 0.11658652409409032 3.0914784975304583E-4 78-79 1.3739904433468704E-5 0.0013946002999970734 0.0 0.11953373359506936 3.0914784975304583E-4 80-81 1.3739904433468704E-5 0.0014014702522138077 0.0 0.12085619939679071 3.1601780196978017E-4 82-83 1.3739904433468704E-5 0.001408340204430542 0.0 0.12136114088472069 3.3662765861998325E-4 84-85 1.3739904433468704E-5 0.001408340204430542 0.0 0.1218729523248674 3.3662765861998325E-4 86-87 1.3739904433468704E-5 0.0014186451327556436 0.0 0.12209966074801964 3.400626347283504E-4 88-89 1.3739904433468704E-5 0.0014770397265978857 0.0 0.12216836027018697 3.538025391618191E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19585 0.0 52.085148 1 GTATCAA 35645 0.0 37.297794 1 CTTATAC 12485 0.0 31.520735 1 TCAACGC 45295 0.0 29.12294 4 ATCAACG 45445 0.0 29.045805 3 CAACGCA 46455 0.0 28.358572 5 TATCAAC 47515 0.0 27.998373 2 AACGCAG 48010 0.0 27.495428 6 TATACAC 18610 0.0 24.71729 3 ACGCAGA 54925 0.0 24.041634 7 CGCAGAG 55565 0.0 23.724367 8 TGGTATC 8875 0.0 23.435202 2 GTGGTAT 9410 0.0 23.432644 1 TTATACA 18745 0.0 22.536543 2 GCAGAGT 64330 0.0 20.512018 9 ACACATC 20375 0.0 19.874529 6 ACATCTC 20365 0.0 19.713594 8 GAGTACT 40460 0.0 19.509422 12-13 AGAGTAC 58930 0.0 19.20484 10-11 TACACAT 23870 0.0 19.089806 5 >>END_MODULE