##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139694_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13559157 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.365886242042922 31.0 25.0 33.0 18.0 33.0 2 30.991169362520104 33.0 31.0 33.0 27.0 33.0 3 31.102627250351922 33.0 31.0 33.0 27.0 34.0 4 31.876914471895265 33.0 32.0 33.0 29.0 34.0 5 32.333481130132206 33.0 33.0 34.0 31.0 34.0 6 35.91029206314227 38.0 36.0 38.0 31.0 38.0 7 36.223723790498184 38.0 37.0 38.0 33.0 38.0 8 36.47885926831587 38.0 37.0 38.0 34.0 38.0 9 36.68426348334192 38.0 38.0 38.0 34.0 38.0 10-11 36.7146003988301 38.0 38.0 38.0 34.0 38.0 12-13 36.76250485188717 38.0 38.0 38.0 34.0 38.0 14-15 36.77294668835238 38.0 38.0 38.0 34.0 38.0 16-17 36.76382112103282 38.0 38.0 38.0 34.0 38.0 18-19 36.768660507434205 38.0 38.0 38.0 34.5 38.0 20-21 36.79702297536945 38.0 38.0 38.0 35.0 38.0 22-23 36.77539120253928 38.0 38.0 38.0 34.5 38.0 24-25 36.78374861315018 38.0 38.0 38.0 35.0 38.0 26-27 36.7511800180564 38.0 38.0 38.0 35.0 38.0 28-29 36.67344509579061 38.0 38.0 38.0 34.0 38.0 30-31 36.69859367619186 38.0 38.0 38.0 34.0 38.0 32-33 36.69598451837556 38.0 38.0 38.0 34.0 38.0 34-35 36.683170620710385 38.0 38.0 38.0 34.0 38.0 36-37 36.65905154299165 38.0 38.0 38.0 34.0 38.0 38-39 36.647533486346816 38.0 38.0 38.0 34.0 38.0 40-41 36.64392344579547 38.0 38.0 38.0 34.0 38.0 42-43 36.62087979382855 38.0 38.0 38.0 34.0 38.0 44-45 36.561508896589224 38.0 38.0 38.0 34.0 38.0 46-47 36.444077219587 38.0 38.0 38.0 34.0 38.0 48-49 36.39702091307883 38.0 38.0 38.0 34.0 38.0 50-51 36.4089300018451 38.0 38.0 38.0 34.0 38.0 52-53 36.411023390686616 38.0 38.0 38.0 34.0 38.0 54-55 36.33924149241865 38.0 38.0 38.0 33.5 38.0 56-57 36.3583470781961 38.0 38.0 38.0 34.0 38.0 58-59 36.303526666409425 38.0 38.0 38.0 33.5 38.0 60-61 36.31736251460805 38.0 38.0 38.0 33.0 38.0 62-63 36.33439590474674 38.0 38.0 38.0 33.0 38.0 64-65 36.32315785875929 38.0 38.0 38.0 33.5 38.0 66-67 36.30841482994915 38.0 38.0 38.0 33.0 38.0 68-69 36.290890823420824 38.0 38.0 38.0 33.0 38.0 70-71 36.291688026799164 38.0 38.0 38.0 33.0 38.0 72-73 36.28470365425798 38.0 38.0 38.0 33.0 38.0 74-75 36.2496277040603 38.0 37.0 38.0 33.0 38.0 76-77 36.239881076387746 38.0 37.0 38.0 33.0 38.0 78-79 36.22948049106806 38.0 37.0 38.0 33.0 38.0 80-81 36.2373404079429 38.0 37.0 38.0 33.0 38.0 82-83 36.20673603422894 38.0 37.0 38.0 33.0 38.0 84-85 36.17580048893865 38.0 37.0 38.0 33.0 38.0 86-87 36.17614096375989 38.0 37.0 38.0 33.0 38.0 88-89 36.181745925865485 38.0 37.0 38.0 33.0 38.0 90-91 36.12950965941845 38.0 37.0 38.0 33.0 38.0 92-93 36.149804862445535 38.0 37.0 38.0 33.0 38.0 94-95 36.10378785962405 38.0 37.0 38.0 33.0 38.0 96-97 36.131436376010015 38.0 37.0 38.0 33.0 38.0 98-99 36.17927996977623 38.0 37.0 38.0 33.0 38.0 100-101 35.652608327983344 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 3.0 18 16.0 19 52.0 20 154.0 21 698.0 22 2857.0 23 8703.0 24 20194.0 25 37963.0 26 63102.0 27 96159.0 28 137390.0 29 184631.0 30 237583.0 31 301519.0 32 381718.0 33 496322.0 34 681924.0 35 1059639.0 36 2222105.0 37 7626424.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.95700470169348 20.541785894211564 15.75608277122243 23.74512663287253 2 14.46783159159526 21.91316171056947 41.3156953636572 22.303311334178076 3 17.95616054891908 26.400335950088934 31.131013528348404 24.512489972643582 4 12.758182533029155 18.878961280557487 38.03029200119152 30.332564185221838 5 13.593217692409073 37.33085149732962 35.40686038152325 13.669070428738056 6 29.619909261320597 38.319218517788386 18.61122339685277 13.449648824038249 7 26.15089090596644 32.84347211046511 23.003465679155845 18.002171304412602 8 24.024222154813902 37.25854785810061 20.934811802828154 17.782418184257327 9 25.06648459045057 17.301761459064156 21.39202311766137 36.239730832823895 10-11 23.992594082360725 27.13080171577038 28.723216347446968 20.153387854421922 12-13 24.95826897183973 24.548342999680177 28.98488036367752 21.508507664802575 14-15 22.003524997903632 25.96911813912915 26.79087645345503 25.236480409512186 16-17 21.458804555474945 29.097443152254964 27.461559741509006 21.982192550761084 18-19 21.44978850823838 28.028210013351124 29.47773965593879 21.044261822471707 20-21 22.211465840216615 27.08419293325615 29.533098080294344 21.17124314623289 22-23 21.971496218058174 27.065050874585573 29.336513532750395 21.626939374605854 24-25 21.7428781222093 27.193998370928224 29.435665016694223 21.62745849016825 26-27 21.721083377432226 27.356458798416018 29.361447429847715 21.561010394304038 28-29 21.619654831555156 27.40668025003956 29.376102012882257 21.597562905523027 30-31 21.99356154804219 27.186100344562398 29.31848657956353 21.50185152783188 32-33 21.620176996234765 27.407977713033087 29.306120623736554 21.66572466699559 34-35 21.8128953426309 27.38530284887955 29.318253184083332 21.48354862440622 36-37 21.754160644644227 27.34044015814306 29.314072548929747 21.591326648282966 38-39 21.60421036729208 27.385866805589444 29.414105377882144 21.595817449236336 40-41 21.895586636161983 27.248333539313585 29.244044676023723 21.612035148500706 42-43 21.82220233329588 27.345553487355133 29.091205210119536 21.74103896922945 44-45 21.85864985961729 27.47000436873667 28.91512892552977 21.75621684611627 46-47 21.971866099119342 27.447941349808115 28.567987238364168 22.01220531270838 48-49 21.898074424864227 27.564557263110697 28.56830635883793 21.969061953187147 50-51 21.870985134400488 27.686030654811805 28.495917924937398 21.947066285850312 52-53 22.028123157502574 27.606318634665516 28.42367958969999 21.94187861813192 54-55 21.962234834488914 27.597345943246708 28.36765508966855 22.07276413259582 56-57 22.00684943986016 27.7050644262946 28.303906832592762 21.98417930125247 58-59 21.965504555852025 27.797946919620685 28.371688020193396 21.864860504333894 60-61 22.04409491407691 27.841853992894006 28.305051910139557 21.80899918288953 62-63 21.960126249995938 27.919021081662954 28.26175817134049 21.85909449700062 64-65 21.940375179793506 27.883734798032222 28.24173553282018 21.934154489354096 66-67 21.99015730932088 27.866268582873804 28.135888982857804 22.00768512494751 68-69 21.947596949546337 27.81483559387513 28.24897214755794 21.988595309020596 70-71 22.00914173226163 27.537225349651955 28.296573205001224 22.157059713085197 72-73 22.07736484967235 27.547287689340717 28.249954470183695 22.125392990803235 74-75 21.970718699097112 27.66996065114154 28.21675625075479 22.14256439900656 76-77 22.069697326830067 27.604050823944533 28.1760348984454 22.15021695078 78-79 21.9860713046162 27.65827020053261 28.14078190832233 22.214876586528863 80-81 22.03004423586855 27.695703223231394 28.115483090944398 22.158769449955656 82-83 22.09845874136685 27.65471069220913 28.177406460714984 22.069424105709036 84-85 22.19764273394215 27.63587734232731 28.069341913875647 22.0971380098549 86-87 22.036157742516433 27.68846695049009 28.166228074908204 22.10914723208527 88-89 22.10833594713792 27.694447253734168 28.046637420018744 22.15057937910917 90-91 22.15806287059299 27.701669320301303 28.068435496695933 22.07183231240977 92-93 22.171023536142286 27.701001198624116 28.039200432965185 22.088774832268417 94-95 22.077998416347775 27.769184110493235 28.0360450858199 22.116772387339097 96-97 22.074872384612586 27.780586747387787 28.071906321178393 22.072634546821234 98-99 22.353009688178304 28.341055136650457 28.11210858423522 21.19382659093602 100-101 22.94803443523506 30.85323517620544 25.46136857247116 20.737361816088345 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3979.0 1 3754.5 2 4324.0 3 5518.5 4 7030.0 5 10100.5 6 13093.0 7 17365.5 8 22035.5 9 23549.0 10 22092.5 11 20360.0 12 21471.0 13 26658.0 14 38634.0 15 53181.5 16 63224.5 17 67423.5 18 66797.0 19 62688.5 20 57110.0 21 52345.5 22 51614.0 23 57649.0 24 70554.0 25 90112.5 26 115383.0 27 142269.5 28 169836.5 29 198757.0 30 227030.5 31 256961.5 32 289471.0 33 322750.5 34 354849.0 35 383806.5 36 415895.5 37 445288.5 38 466846.5 39 485101.0 40 505182.0 41 525094.5 42 536508.5 43 546690.5 44 564421.5 45 575444.0 46 572288.5 47 567620.0 48 561623.0 49 551896.5 50 539309.0 51 521299.5 52 496494.0 53 468532.0 54 439559.0 55 406477.5 56 370923.0 57 333969.0 58 294364.0 59 254802.5 60 213504.5 61 172054.0 62 134891.5 63 103835.5 64 78525.5 65 58000.0 66 42599.0 67 32050.5 68 24030.0 69 17507.0 70 12679.5 71 9013.5 72 6295.0 73 4319.0 74 2938.5 75 1924.5 76 1222.5 77 742.0 78 450.5 79 292.0 80 189.5 81 124.0 82 82.5 83 55.0 84 39.5 85 31.5 86 23.5 87 18.0 88 13.5 89 8.5 90 5.0 91 2.0 92 2.0 93 2.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.05825583404632014 6 0.0 7 0.0035916687150978487 8 0.0 9 0.0 10-11 0.0 12-13 1.1062634646091936E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.640191240458922E-5 28-29 3.321538059603967E-5 30-31 3.694483094895089E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 8.022499673369657E-4 54-55 1.074915477803513E-4 56-57 0.0030298169705626596 58-59 0.0074128999430477256 60-61 0.0032518519337563895 62-63 0.0058613985321577305 64-65 0.006597643674991199 66-67 0.004916249904656132 68-69 0.003839488757499622 70-71 0.005337049842670085 72-73 0.003299402894222435 74-75 0.0028680687090183944 76-77 0.002543860653278328 78-79 1.0187223901317869E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.533695919535634E-5 88-89 1.3981716482201998E-5 90-91 2.2621508605787409E-4 92-93 0.0 94-95 1.0126259996065224E-4 96-97 4.886108476005665E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 771.0 22-23 1684.0 24-25 1993.0 26-27 4471.0 28-29 10373.0 30-31 25565.0 32-33 33145.0 34-35 45188.0 36-37 70409.0 38-39 83443.0 40-41 83129.0 42-43 95402.0 44-45 113971.0 46-47 114315.0 48-49 105403.0 50-51 95344.0 52-53 91195.0 54-55 98163.0 56-57 102578.0 58-59 102302.0 60-61 100204.0 62-63 97337.0 64-65 105565.0 66-67 111703.0 68-69 113343.0 70-71 118281.0 72-73 102059.0 74-75 104676.0 76-77 110022.0 78-79 113837.0 80-81 114417.0 82-83 109519.0 84-85 108727.0 86-87 112967.0 88-89 118002.0 90-91 120461.0 92-93 118795.0 94-95 128405.0 96-97 203414.0 98-99 1123296.0 100-101 8945129.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.03326426732825 #Duplication Level Percentage of deduplicated Percentage of total 1 89.39402379904209 75.12071625824736 2 7.2295022551841335 12.150373470622677 3 1.8597357280619797 4.688389917108733 4 0.6769034071904433 2.275296115995577 5 0.3039174498418894 1.2769587689007986 6 0.17087851488627254 0.8615687639428036 7 0.10827428137763001 0.6369048910253009 8 0.06397660747715399 0.4300930530443847 9 0.04451340212450033 0.3366545835749388 >10 0.1443276916915685 1.8751858174481935 >50 0.003220401665911865 0.18508858217093124 >100 6.654945489983764E-4 0.1069790260863587 >500 1.524454054696776E-5 0.008198710428270993 >1k 4.572236685704265E-5 0.04759204140366914 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.375089764061291E-6 2 0.0 1.4750179528122582E-5 0.0 0.0 7.375089764061291E-6 3 0.0 1.4750179528122582E-5 0.0 0.0 7.375089764061291E-6 4 0.0 5.900071811249033E-5 0.0 0.0 7.375089764061291E-6 5 0.0 6.637580787655161E-5 0.0 0.0 7.375089764061291E-6 6 6.637580787655161E-5 6.637580787655161E-5 0.0 0.0 1.4750179528122582E-5 7 6.637580787655161E-5 8.11259874046742E-5 0.0 0.0 3.6875448820306456E-5 8 6.637580787655161E-5 8.11259874046742E-5 0.0 0.0 5.1625628348429035E-5 9 6.637580787655161E-5 1.3275161575310323E-4 0.0 1.4750179528122582E-5 5.900071811249033E-5 10-11 7.006335275858226E-5 1.401267055171645E-4 0.0 5.1625628348429035E-5 5.900071811249033E-5 12-13 7.375089764061291E-5 1.4750179528122583E-4 0.0 5.1625628348429035E-5 5.900071811249033E-5 14-15 7.375089764061291E-5 2.5444059686011454E-4 0.0 5.900071811249033E-5 7.375089764061291E-5 16-17 9.218862205076614E-5 2.581281417421452E-4 0.0 7.743844252264356E-5 9.587616693279678E-5 18-19 9.587616693279678E-5 2.8762850079839034E-4 0.0 1.0693880157888871E-4 1.1062634646091937E-4 20-21 9.587616693279678E-5 3.097537700905742E-4 0.0 1.5856442992731774E-4 1.1062634646091937E-4 22-23 9.587616693279678E-5 3.4294167402885E-4 0.0 1.8806478898356294E-4 1.4381425039919517E-4 24-25 9.956371181482743E-5 4.019423921413403E-4 0.0 2.2862778268590002E-4 1.9175233386559357E-4 26-27 1.0325125669685807E-4 4.2775520631555485E-4 0.0 2.91316045680421E-4 1.9175233386559357E-4 28-29 1.1062634646091937E-4 4.3513029607961616E-4 0.0 6.563829890014549E-4 1.954398787476242E-4 30-31 1.1062634646091937E-4 4.5725556537180005E-4 0.0 0.0017773966331387711 2.028149685116855E-4 32-33 1.1431389134295001E-4 4.646306551358613E-4 0.0 0.004137425357638384 2.2862778268590002E-4 34-35 1.216889811070113E-4 5.457566425405355E-4 0.0 0.007308713956184739 2.581281417421452E-4 36-37 1.3275161575310323E-4 6.121324504170871E-4 0.0 0.012205773559521436 2.618156866241758E-4 38-39 1.3275161575310323E-4 6.45320354355363E-4 0.0 0.01885072943694066 2.7287832127026777E-4 40-41 1.3275161575310323E-4 7.301338866420678E-4 0.0 0.026137318123833214 2.8762850079839034E-4 42-43 1.3275161575310323E-4 7.48571611052221E-4 0.0 0.033353843457967186 2.9500359056245165E-4 44-45 1.3275161575310323E-4 8.407602331029872E-4 0.0 0.04136319094173775 2.9869113544448225E-4 46-47 1.3275161575310323E-4 9.108235858615694E-4 0.0 0.050305487280662066 3.318790393827581E-4 48-49 1.3275161575310323E-4 9.145111307436001E-4 0.0 0.05910396936918719 3.5400430867494194E-4 50-51 1.5118934016325648E-4 9.698243039740597E-4 0.0 0.06798357744511697 3.5400430867494194E-4 52-53 1.548768850452871E-4 9.808869386201517E-4 0.0 0.0768299976171085 3.871922126132178E-4 54-55 1.548768850452871E-4 9.956371181482743E-4 0.0 0.08597142137966246 4.2406766143352425E-4 56-57 1.622519748093484E-4 0.0010251374772045194 0.0 0.09274544132795276 4.314427511975855E-4 58-59 1.6962706457340968E-4 0.001039887656732642 0.0 0.09885939074235958 4.461929307257081E-4 60-61 1.8437724410153228E-4 0.0010730755606709178 0.0 0.10461564830320941 4.4988047560773873E-4 62-63 2.2862778268590002E-4 0.0010988883748451323 0.0 0.1097634609585242 4.646306551358613E-4 64-65 2.3231532756793065E-4 0.0012242649008341743 0.0 0.11495921169730537 4.6831820001789196E-4 66-67 2.433779622140226E-4 0.0012242649008341743 0.0 0.12049052902035134 4.756932897819532E-4 68-69 2.433779622140226E-4 0.0012611403496544807 0.0 0.12632053747884178 4.793808346639839E-4 70-71 2.433779622140226E-4 0.001279578074064634 0.0 0.13151260067274095 4.867559244280452E-4 72-73 2.7287832127026777E-4 0.0012869531638286954 0.0 0.13577540255636839 5.310064630124129E-4 74-75 2.7287832127026777E-4 0.0013385787921771242 0.0 0.13941869689981462 5.310064630124129E-4 76-77 2.765658661522984E-4 0.0014086421449357065 0.0 0.14235398262591104 5.346940078944436E-4 78-79 2.80253411034329E-4 0.0014307674142278904 0.0 0.14478407470316923 5.420690976585048E-4 80-81 2.80253411034329E-4 0.0014307674142278904 0.0 0.1459124634370706 5.678819118327195E-4 82-83 2.80253411034329E-4 0.0014307674142278904 0.0 0.14644346990008303 6.047573606530258E-4 84-85 2.80253411034329E-4 0.0014381425039919518 0.0 0.14685647492687046 6.047573606530258E-4 86-87 2.80253411034329E-4 0.0014492051386380436 0.0 0.1470076642670337 6.158199952991177E-4 88-89 2.80253411034329E-4 0.0015045183118685033 0.0 0.14707404007491026 6.231950850631792E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19585 0.0 52.70326 1 GTATCAA 34955 0.0 36.242073 1 TCAACGC 43665 0.0 28.63737 4 ATCAACG 43840 0.0 28.523056 3 CAACGCA 44920 0.0 27.837282 5 TATCAAC 45295 0.0 27.825842 2 AACGCAG 46120 0.0 27.170958 6 ACGCAGA 52345 0.0 23.92325 7 GTGGTAT 8795 0.0 23.639025 1 CGCAGAG 53345 0.0 23.45802 8 TGGTATC 8345 0.0 23.208035 2 GCAGAGT 61730 0.0 20.250685 9 GAGTACT 38075 0.0 19.863302 12-13 CTTATAC 9370 0.0 19.104113 1 CAGAGTA 60465 0.0 18.827919 10-11 AGAGTAC 56320 0.0 18.809137 10-11 GTACATG 39585 0.0 18.327944 1 TACATGG 39450 0.0 18.040781 2 GTACTTT 42365 0.0 17.740389 14-15 AGTACTT 41545 0.0 17.400122 12-13 >>END_MODULE