##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139692_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11129272 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.198063628959737 31.0 25.0 33.0 18.0 33.0 2 30.937771131840428 33.0 31.0 33.0 27.0 33.0 3 31.06454653997135 33.0 31.0 33.0 27.0 34.0 4 31.86685059004758 33.0 32.0 33.0 29.0 34.0 5 32.324277724544785 33.0 33.0 34.0 31.0 34.0 6 35.90167056749085 38.0 36.0 38.0 31.0 38.0 7 36.209419627806746 38.0 37.0 38.0 33.0 38.0 8 36.46570260840062 38.0 37.0 38.0 34.0 38.0 9 36.67943024485339 38.0 38.0 38.0 34.0 38.0 10-11 36.70930695197313 38.0 38.0 38.0 34.0 38.0 12-13 36.7592278722274 38.0 38.0 38.0 34.0 38.0 14-15 36.76967518630149 38.0 38.0 38.0 34.0 38.0 16-17 36.757040577317184 38.0 38.0 38.0 34.0 38.0 18-19 36.76311249289262 38.0 38.0 38.0 34.5 38.0 20-21 36.79075541440942 38.0 38.0 38.0 35.0 38.0 22-23 36.76935008252461 38.0 38.0 38.0 34.5 38.0 24-25 36.77607146849876 38.0 38.0 38.0 35.0 38.0 26-27 36.74397650731636 38.0 38.0 38.0 34.5 38.0 28-29 36.66610321231559 38.0 38.0 38.0 34.0 38.0 30-31 36.688844982856224 38.0 38.0 38.0 34.0 38.0 32-33 36.68396183512809 38.0 38.0 38.0 34.0 38.0 34-35 36.66869843892508 38.0 38.0 38.0 34.0 38.0 36-37 36.63886361416509 38.0 38.0 38.0 34.0 38.0 38-39 36.621702899108726 38.0 38.0 38.0 34.0 38.0 40-41 36.63507295342957 38.0 38.0 38.0 34.0 38.0 42-43 36.61581633449323 38.0 38.0 38.0 34.0 38.0 44-45 36.55759674483707 38.0 38.0 38.0 34.0 38.0 46-47 36.4410639841603 38.0 38.0 38.0 34.0 38.0 48-49 36.39501528087166 38.0 38.0 38.0 34.0 38.0 50-51 36.40447123861984 38.0 38.0 38.0 34.0 38.0 52-53 36.406300630350785 38.0 38.0 38.0 34.0 38.0 54-55 36.334036382668465 38.0 38.0 38.0 33.0 38.0 56-57 36.350755628602414 38.0 38.0 38.0 34.0 38.0 58-59 36.29270450325284 38.0 38.0 38.0 33.5 38.0 60-61 36.307587095089076 38.0 38.0 38.0 33.0 38.0 62-63 36.32294501571366 38.0 38.0 38.0 33.0 38.0 64-65 36.31211431587509 38.0 38.0 38.0 33.0 38.0 66-67 36.293074218322104 38.0 38.0 38.0 33.0 38.0 68-69 36.27254029919142 38.0 37.5 38.0 33.0 38.0 70-71 36.273728889903126 38.0 37.0 38.0 33.0 38.0 72-73 36.2626606773486 38.0 37.0 38.0 33.0 38.0 74-75 36.22604910219411 38.0 37.0 38.0 33.0 38.0 76-77 36.216270889954245 38.0 37.0 38.0 33.0 38.0 78-79 36.20321974862157 38.0 37.0 38.0 33.0 38.0 80-81 36.21279896006094 38.0 37.0 38.0 33.0 38.0 82-83 36.183520358016516 38.0 37.0 38.0 33.0 38.0 84-85 36.151308086375835 38.0 37.0 38.0 33.0 38.0 86-87 36.152703138781206 38.0 37.0 38.0 33.0 38.0 88-89 36.156356960100595 38.0 37.0 38.0 33.0 38.0 90-91 36.103288329017644 38.0 37.0 38.0 33.0 38.0 92-93 36.124682184472405 38.0 37.0 38.0 33.0 38.0 94-95 36.075900213621566 38.0 37.0 38.0 33.0 38.0 96-97 36.10393039521831 38.0 37.0 38.0 33.0 38.0 98-99 36.15290030699339 38.0 37.0 38.0 33.0 38.0 100-101 35.606281733918934 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 25.0 19 46.0 20 146.0 21 620.0 22 2539.0 23 7453.0 24 16886.0 25 31515.0 26 52725.0 27 80280.0 28 114282.0 29 152666.0 30 196063.0 31 249430.0 32 315406.0 33 410718.0 34 564446.0 35 878741.0 36 1849222.0 37 6206058.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.62850400277754 20.758419778041187 15.727335983881066 23.885740235300208 2 14.397770132673548 21.918360877512924 41.50207668569876 22.18179230411477 3 18.030451587489278 26.429329789046403 31.03912816579557 24.501090457668752 4 12.740024684453754 18.92646706810652 38.025236511426804 30.30827173601292 5 13.585732947225427 37.26884096603695 35.528802109508526 13.616623977229104 6 29.515488524316773 38.455992449461206 18.58684916677389 13.44166985944813 7 26.035041555316198 32.73263011325198 23.107106442945266 18.12522188848656 8 23.75215557675291 37.58357240257943 21.02901249964957 17.63525952101809 9 24.774082258030894 17.427941378375873 21.514336247689876 36.28364011590336 10-11 23.936565662156518 27.21756193936135 28.756710232259575 20.08916216622255 12-13 24.801068497706115 24.53859397163543 29.06588980832122 21.594447722337236 14-15 21.865603608214446 26.029649558389806 26.759283985511363 25.34546284788439 16-17 21.412510180360407 29.202858012635506 27.466266436834324 21.918365370169766 18-19 21.40577119509704 28.106362213089948 29.401267216759553 21.086599375053463 20-21 22.097293924580537 27.225943489069444 29.45147027592336 21.225292310426664 22-23 21.834508184343317 27.265980340825934 29.281536997978264 21.617974476852485 24-25 21.659055110786095 27.398707321405613 29.403632166493715 21.53860540131457 26-27 21.700855409187177 27.540268482316094 29.302524124955216 21.456351983541513 28-29 21.526094988506177 27.44783717941478 29.422842295973407 21.60322553610564 30-31 21.7960823354048 27.458594666993108 29.258344974832756 21.486978022769332 32-33 21.802829659722764 27.45955171366067 29.235685057972788 21.501933568643782 34-35 21.787213442937052 27.43303072824905 29.27280249119692 21.506953337616974 36-37 21.666781327378963 27.53498951807467 29.21121719395165 21.58701196059471 38-39 21.54808584171682 27.462081853565728 29.383062286362904 21.60677001835455 40-41 21.81856081336708 27.309353317343188 29.27704122298908 21.595044646300657 42-43 21.774087725267538 27.396278840593318 29.11648939247233 21.713144041666812 44-45 21.75915964804592 27.57501210567188 28.938155913977994 21.727672332304206 46-47 21.955970093886265 27.52721405636181 28.539160912059458 21.977654937692463 48-49 21.851154049181627 27.59789529299561 28.605863198970134 21.94508745885263 50-51 21.754295420445793 27.721271481875657 28.584241144615515 21.940191953063035 52-53 21.934394006731196 27.64676198906647 28.584032360205363 21.83481164399697 54-55 21.88851842373439 27.654280874030903 28.437673037639673 22.01952766459504 56-57 22.012053629058926 27.82100285198127 28.25915424491801 21.907789274041797 58-59 21.85319191591328 27.965973249947616 28.44546999095432 21.735364843184783 60-61 21.954304961130568 28.067382612966163 28.268658781075974 21.7096536448273 62-63 21.82514138391343 28.22477647508536 28.23290979225877 21.717172348742434 64-65 21.79804640483151 28.18342940179538 28.203252078847157 21.815272114525957 66-67 21.889036269417396 28.121655123253287 28.106032764615023 21.883275842714298 68-69 21.869795566592337 27.996101380551202 28.25145941267858 21.88264364017788 70-71 21.891370822581422 27.741731633427253 28.319375907778838 22.04752163621249 72-73 21.970047884339476 27.697485069025024 28.303703922449724 22.028763124185772 74-75 21.906094380116762 27.80592971890663 28.225511307687047 22.06246459328956 76-77 22.00545661363186 27.752974664944404 28.189419393585247 22.052149327838492 78-79 21.948598791659006 27.776137909788858 28.162497996440738 22.1127653021114 80-81 21.93998354406472 27.80623909554659 28.191768503287594 22.06200885710109 82-83 22.00800324236009 27.79176715831862 28.21742319626528 21.982806403056014 84-85 22.094498085026768 27.78606606990963 28.129163589110473 21.990272255953126 86-87 21.973479703696288 27.789803068434267 28.213742486328414 22.02297474154103 88-89 22.043220121578738 27.777427854258583 28.13905727580288 22.04029474835979 90-91 22.06216657102764 27.831598733151182 28.127262900478033 21.978971795343146 92-93 22.07175900964673 27.794389411162047 28.146677398910402 21.987174180280824 94-95 21.97182659238412 27.889007971023755 28.128563204527225 22.010602232064905 96-97 22.036473288465373 27.88027322800703 28.132650293016265 21.95060319051133 98-99 22.265777881213275 28.448242635168842 28.186982213567465 21.09899727005042 100-101 22.818668675396665 30.991941582896725 25.578828171618547 20.610561570088066 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2911.0 1 2805.0 2 3305.5 3 4176.5 4 5461.5 5 8062.0 6 10477.0 7 13422.0 8 16272.5 9 17116.0 10 16223.0 11 15243.0 12 16500.5 13 20683.0 14 29787.5 15 41128.5 16 49264.5 17 52911.0 18 52548.0 19 49299.5 20 45073.5 21 41786.0 22 41944.0 23 47298.0 24 58117.5 25 74492.5 26 95116.0 27 117684.5 28 141480.0 29 166532.5 30 190292.0 31 215339.0 32 244121.5 33 272148.0 34 297659.5 35 321111.0 36 347174.0 37 371300.5 38 389594.5 39 403557.0 40 416787.5 41 432474.5 42 441275.0 43 451244.0 44 472133.0 45 483206.0 46 478306.0 47 473086.0 48 466772.5 49 455161.0 50 440773.0 51 423084.0 52 400835.5 53 377634.0 54 353017.0 55 324879.0 56 295969.0 57 264932.0 58 233411.0 59 201999.5 60 168090.0 61 135007.5 62 105505.5 63 80934.0 64 60763.5 65 44441.0 66 32487.5 67 24626.5 68 18563.0 69 13478.5 70 9827.5 71 7001.5 72 4895.0 73 3308.0 74 2133.5 75 1348.5 76 812.5 77 469.5 78 315.0 79 212.0 80 142.5 81 99.5 82 70.0 83 45.5 84 27.5 85 24.0 86 19.0 87 11.0 88 4.5 89 3.5 90 4.0 91 3.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.056625446839649526 6 0.0 7 0.0033335513769454104 8 0.0 9 0.0 10-11 0.0 12-13 1.3477970526733464E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.494298398223062E-5 28-29 2.697657596932008E-5 30-31 2.250289330950727E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.3965395333109359E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 8.221138431519287E-4 54-55 1.1137346826374284E-4 56-57 0.0030990878432788837 58-59 0.007607200013069031 60-61 0.003319264579968898 62-63 0.005867048773431682 64-65 0.0066205677492328615 66-67 0.004879840665823983 68-69 0.0036641363227272604 70-71 0.005307402190212205 72-73 0.0031680258494125066 74-75 0.003010488350944426 76-77 0.0025841840673733094 78-79 7.008745944496986E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.049366534526615E-5 88-89 5.66932762227946E-6 90-91 1.71960795002269E-4 92-93 0.0 94-95 8.795313528593593E-5 96-97 5.940100501748409E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 127.0 20-21 584.0 22-23 1202.0 24-25 1566.0 26-27 3460.0 28-29 7812.0 30-31 20621.0 32-33 25899.0 34-35 36741.0 36-37 57488.0 38-39 67273.0 40-41 67108.0 42-43 76540.0 44-45 91228.0 46-47 92353.0 48-49 85134.0 50-51 76158.0 52-53 73033.0 54-55 79241.0 56-57 83317.0 58-59 83756.0 60-61 82173.0 62-63 79619.0 64-65 88170.0 66-67 95968.0 68-69 95225.0 70-71 103947.0 72-73 82501.0 74-75 84357.0 76-77 89473.0 78-79 92674.0 80-81 93685.0 82-83 88455.0 84-85 87875.0 86-87 91523.0 88-89 95539.0 90-91 99090.0 92-93 95992.0 94-95 103773.0 96-97 165099.0 98-99 917825.0 100-101 7365668.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.16597934780914 #Duplication Level Percentage of deduplicated Percentage of total 1 89.62300198439134 76.3283073609133 2 7.311359791408088 12.453582339989268 3 1.74313402546681 4.453671492401093 4 0.6183390867332881 2.1064581556268154 5 0.27449960605415635 1.1689013890095012 6 0.15132338597474396 0.7732562618859357 7 0.08796946744137994 0.5244404093145233 8 0.0514313837424015 0.350416333250769 9 0.033126447516429895 0.25391217105454966 >10 0.10317646215049277 1.3739049569491648 >50 0.002052493056337514 0.11245171458529417 >100 5.517843930520973E-4 0.07617049555393993 >500 3.4081671495358295E-5 0.02452691946585677 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.7970627368977954E-5 2 0.0 8.985313684488977E-6 0.0 0.0 2.6955941053466928E-5 3 0.0 8.985313684488977E-6 0.0 0.0 2.6955941053466928E-5 4 0.0 3.594125473795591E-5 0.0 8.985313684488977E-6 2.6955941053466928E-5 5 0.0 3.594125473795591E-5 0.0 8.985313684488977E-6 2.6955941053466928E-5 6 6.289719579142283E-5 3.594125473795591E-5 0.0 8.985313684488977E-6 2.6955941053466928E-5 7 6.289719579142283E-5 4.492656842244488E-5 0.0 4.492656842244488E-5 2.6955941053466928E-5 8 6.289719579142283E-5 5.3911882106933856E-5 0.0 4.492656842244488E-5 2.6955941053466928E-5 9 6.289719579142283E-5 1.0782376421386771E-4 0.0 4.492656842244488E-5 3.594125473795591E-5 10-11 6.289719579142283E-5 1.0782376421386771E-4 0.0 4.492656842244488E-5 3.594125473795591E-5 12-13 6.289719579142283E-5 1.0782376421386771E-4 0.0 4.941922526468937E-5 4.0433911580200394E-5 14-15 6.738985263366733E-5 1.7521361684753504E-4 0.0 5.3911882106933856E-5 5.840453894917834E-5 16-17 1.3927236210957916E-4 1.9767690105875748E-4 0.0 5.840453894917834E-5 6.289719579142283E-5 18-19 1.4376501895182363E-4 2.1115487158549095E-4 0.0 6.289719579142283E-5 8.985313684488976E-5 20-21 1.4376501895182363E-4 2.336181557967134E-4 0.0 7.188250947591182E-5 9.434579368713425E-5 22-23 1.4376501895182363E-4 2.4709612632344685E-4 0.0 9.434579368713425E-5 1.0333110737162322E-4 24-25 1.5724298947855707E-4 3.055006652726252E-4 0.0 1.3028704842509017E-4 1.0782376421386771E-4 26-27 1.6173564632080158E-4 3.324566063260921E-4 0.0 2.4709612632344685E-4 1.2579439158284567E-4 28-29 1.6173564632080158E-4 3.3694926316833664E-4 0.0 6.199866442297393E-4 1.2579439158284567E-4 30-31 1.7072096000529056E-4 3.5941254737955903E-4 0.0 0.0018914085305849295 1.3028704842509014E-4 32-33 1.7521361684753504E-4 3.5941254737955903E-4 0.0 0.0042365754022365525 1.4376501895182363E-4 34-35 1.9767690105875748E-4 4.088317726442484E-4 0.0 0.007341001280227494 1.6173564632080158E-4 36-37 2.0666221474324647E-4 4.4028037053995986E-4 0.0 0.012107710189848896 1.6173564632080158E-4 38-39 2.0666221474324647E-4 4.6274365475118225E-4 0.0 0.019381321617442722 1.8419893053202402E-4 40-41 2.0666221474324647E-4 5.301335073848496E-4 0.0 0.027203037179790376 1.9767690105875748E-4 42-43 2.0666221474324647E-4 5.391188210693386E-4 0.0 0.0343149129610634 1.9767690105875748E-4 44-45 2.1115487158549095E-4 6.020160168607614E-4 0.0 0.0421815550918335 1.9767690105875748E-4 46-47 2.1564752842773542E-4 6.469425852832063E-4 0.0 0.051256721913167366 2.0666221474324647E-4 48-49 2.2014018526997993E-4 6.514352421254508E-4 0.0 0.06071376456609201 2.1564752842773542E-4 50-51 2.4709612632344685E-4 6.783911831789178E-4 0.0 0.07000008625901137 2.1564752842773542E-4 52-53 2.5158878316569133E-4 6.828838400211622E-4 0.0 0.07890453212033995 2.3361815579671337E-4 54-55 2.560814400079358E-4 6.963618105478957E-4 0.0 0.08777752938377281 2.5158878316569133E-4 56-57 2.6057409685018034E-4 7.008544673901401E-4 0.0 0.09445811010819036 2.560814400079358E-4 58-59 2.6057409685018034E-4 7.053471242323846E-4 0.0 0.09997509271046659 2.6057409685018034E-4 60-61 2.6057409685018034E-4 7.143324379168736E-4 0.0 0.10544714874432037 2.695594105346693E-4 62-63 3.144859789571142E-4 7.323030652858516E-4 0.0 0.11104949182659926 2.7854472421915826E-4 64-65 3.144859789571142E-4 8.176635452884968E-4 0.0 0.11620256922465369 2.7854472421915826E-4 66-67 3.2796394948384763E-4 8.176635452884968E-4 0.0 0.12166563994482299 2.830373810614028E-4 68-69 3.324566063260921E-4 8.536048000264527E-4 0.0 0.12697596033235597 2.8753003790364727E-4 70-71 3.5491989053731455E-4 8.580974568686972E-4 0.0 0.132250339465151 2.965153515881362E-4 72-73 4.043391158020039E-4 8.715754273954308E-4 0.0 0.1361185170063235 3.77383174748537E-4 74-75 4.088317726442484E-4 9.2099465266012E-4 0.0 0.13942061978537318 3.77383174748537E-4 76-77 4.1332442948649294E-4 9.47950593713587E-4 0.0 0.14250707503599516 3.77383174748537E-4 78-79 4.1332442948649294E-4 9.524432505558315E-4 0.0 0.1453688974445049 3.77383174748537E-4 80-81 4.1332442948649294E-4 9.56935907398076E-4 0.0 0.14646959837085483 3.8187583159078153E-4 82-83 4.178170863287374E-4 9.614285642403204E-4 0.0 0.14692784936876374 3.86368488433026E-4 84-85 4.3129505685547085E-4 9.74906534767054E-4 0.0 0.14736363708246147 3.86368488433026E-4 86-87 4.357877136977154E-4 0.0010063551326627653 0.0 0.14750290944457103 3.9535380211751497E-4 88-89 4.4028037053995986E-4 0.0010243257600317432 0.0 0.14755682132667797 3.9984645895975945E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14715 0.0 48.812595 1 GTATCAA 26505 0.0 36.952644 1 TCAACGC 32965 0.0 29.436224 4 ATCAACG 33150 0.0 29.232885 3 CAACGCA 33665 0.0 28.772863 5 TATCAAC 34590 0.0 28.203093 2 AACGCAG 34865 0.0 27.87931 6 CTTATAC 9240 0.0 27.048641 1 ACGCAGA 39705 0.0 24.469984 7 CGCAGAG 40010 0.0 24.260355 8 GTGGTAT 7285 0.0 23.819649 1 TATACAC 13700 0.0 21.992455 3 TGGTATC 7210 0.0 21.972004 2 GCAGAGT 46825 0.0 20.757095 9 GAGTACT 29685 0.0 19.473808 12-13 AGAGTAC 42905 0.0 19.184639 10-11 TTATACA 14585 0.0 18.882221 2 CAGAGTA 46085 0.0 18.356977 10-11 GTACATG 30380 0.0 18.144373 1 GCGAATC 6890 0.0 18.088253 32-33 >>END_MODULE