##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139691_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11651554 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.895942893111084 33.0 31.0 33.0 25.0 34.0 2 31.870784532260675 33.0 32.0 33.0 28.0 34.0 3 31.65461448318396 33.0 31.0 33.0 28.0 34.0 4 32.24019594296177 33.0 33.0 34.0 30.0 34.0 5 32.26198591192213 33.0 33.0 34.0 31.0 34.0 6 35.593650769674156 38.0 36.0 38.0 29.0 38.0 7 36.27259110673134 38.0 37.0 38.0 33.0 38.0 8 36.421228103993684 38.0 37.0 38.0 34.0 38.0 9 36.62550815110156 38.0 38.0 38.0 34.0 38.0 10-11 36.68920227293286 38.0 38.0 38.0 34.0 38.0 12-13 36.732535419738866 38.0 38.0 38.0 34.0 38.0 14-15 36.778875032463475 38.0 38.0 38.0 35.0 38.0 16-17 36.76069187852539 38.0 38.0 38.0 34.0 38.0 18-19 36.76343614765893 38.0 38.0 38.0 34.5 38.0 20-21 36.78925577891034 38.0 38.0 38.0 35.0 38.0 22-23 36.76272477485149 38.0 38.0 38.0 34.5 38.0 24-25 36.7704355061559 38.0 38.0 38.0 34.5 38.0 26-27 36.737798746687794 38.0 38.0 38.0 34.5 38.0 28-29 36.66171362349794 38.0 38.0 38.0 34.0 38.0 30-31 36.68600457797235 38.0 38.0 38.0 34.0 38.0 32-33 36.681536113887745 38.0 38.0 38.0 34.0 38.0 34-35 36.66993991666193 38.0 38.0 38.0 34.0 38.0 36-37 36.64343917672761 38.0 38.0 38.0 34.0 38.0 38-39 36.6305872473159 38.0 38.0 38.0 34.0 38.0 40-41 36.6283946259956 38.0 38.0 38.0 34.0 38.0 42-43 36.599141647906166 38.0 38.0 38.0 34.0 38.0 44-45 36.54172689517337 38.0 38.0 38.0 34.0 38.0 46-47 36.42711444812525 38.0 38.0 38.0 34.0 38.0 48-49 36.381481901605255 38.0 38.0 38.0 34.0 38.0 50-51 36.39285320560051 38.0 38.0 38.0 34.0 38.0 52-53 36.39819568549996 38.0 38.0 38.0 34.0 38.0 54-55 36.31752062482461 38.0 38.0 38.0 33.0 38.0 56-57 36.3324039334548 38.0 38.0 38.0 33.0 38.0 58-59 36.27469536726747 38.0 38.0 38.0 33.0 38.0 60-61 36.28542023042742 38.0 38.0 38.0 33.0 38.0 62-63 36.304954814460785 38.0 38.0 38.0 33.0 38.0 64-65 36.29183198433569 38.0 38.0 38.0 33.0 38.0 66-67 36.273562996222886 38.0 37.0 38.0 33.0 38.0 68-69 36.253496599661304 38.0 37.0 38.0 33.0 38.0 70-71 36.25440475805438 38.0 37.0 38.0 33.0 38.0 72-73 36.245203043030955 38.0 37.0 38.0 33.0 38.0 74-75 36.204726762330935 38.0 37.0 38.0 33.0 38.0 76-77 36.191187958533234 38.0 37.0 38.0 33.0 38.0 78-79 36.17648773975637 38.0 37.0 38.0 33.0 38.0 80-81 36.18245385033114 38.0 37.0 38.0 33.0 38.0 82-83 36.14690925665832 38.0 37.0 38.0 33.0 38.0 84-85 36.110803276625624 38.0 37.0 38.0 33.0 38.0 86-87 36.11316598113927 38.0 37.0 38.0 33.0 38.0 88-89 36.11471890647083 38.0 37.0 38.0 33.0 38.0 90-91 36.06035006579063 38.0 37.0 38.0 33.0 38.0 92-93 36.08173126700082 38.0 37.0 38.0 33.0 38.0 94-95 36.03010581885762 38.0 37.0 38.0 32.5 38.0 96-97 36.05092293133485 38.0 37.0 38.0 33.0 38.0 98-99 36.097408024275296 38.0 37.0 38.0 33.0 38.0 100-101 35.55613651170694 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 10.0 19 34.0 20 99.0 21 573.0 22 2463.0 23 7495.0 24 17514.0 25 33556.0 26 55745.0 27 83503.0 28 118187.0 29 157841.0 30 203404.0 31 258852.0 32 327874.0 33 425155.0 34 583364.0 35 897830.0 36 1811538.0 37 6666515.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03514895952935 20.558038867605127 14.062278731231903 25.344533441633622 2 14.227321093821477 20.697196270986687 42.66178571545049 22.413696919741348 3 18.2195439337963 26.00889117451629 29.49985040622049 26.27171448546692 4 12.624547764186648 18.37487085413671 38.69767071413822 30.302910667538423 5 13.877366015393399 36.93127520079914 35.23476203987609 13.956596743931367 6 29.887884483048353 37.98507907185599 18.59395750987379 13.533078935221859 7 26.567973580604193 32.63949260917626 22.75855995856885 18.0339738516507 8 24.059125503774005 37.15454608029109 20.878227917065825 17.90810049886908 9 25.260003944538212 17.383200558483445 21.285109265253375 36.07168623172497 10-11 24.148950431847975 27.03144576251374 28.54824343602579 20.271360369612502 12-13 24.993964323897426 24.381947196223543 28.79312740541969 21.830961074459346 14-15 22.141990673518745 25.750595156663223 26.580737642378004 25.526676527440028 16-17 21.650687110062744 28.93259989182559 27.238079143777732 22.17863385433394 18-19 21.65362234084827 27.95392786232635 29.11418082085875 21.27826897596664 20-21 22.449603940150194 27.087532692076206 29.06420360074695 21.398659767026647 22-23 22.146262079016772 27.043921024854672 28.92193145819828 21.887885437930272 24-25 21.8957334987199 27.19184770129126 29.07149034613148 21.840928453857362 26-27 21.894960700171566 27.309367157376514 28.982533142489007 21.81313899996291 28-29 21.787114846419488 27.313703956505474 29.04336330274788 21.855817894327153 30-31 22.13857089538048 27.191058894209853 28.94026348964669 21.730106720762986 32-33 21.89010315142184 27.348098099110814 28.942127283142522 21.81967146632483 34-35 22.021052429891512 27.36640249753732 28.929577113479983 21.682967959091194 36-37 21.97300188567415 27.244284404805242 28.91723881732693 21.865474892193674 38-39 21.75921320426894 27.39210655696632 29.016566721331383 21.832113517433363 40-41 22.057354895085226 27.202598252769484 28.919837549228223 21.82020930291707 42-43 21.99844159989403 27.225973828319866 28.800795529169047 21.974789042617054 44-45 21.99329779864003 27.385831042901593 28.65675790521573 21.96411325324265 46-47 22.12300958322405 27.360258025492968 28.349833864969604 22.166898526313382 48-49 22.01538357522762 27.479852159019202 28.345974939150814 22.158789326602363 50-51 21.945319554179115 27.58047725989517 28.322189052494156 22.152014133431557 52-53 22.13180622818006 27.507525504967123 28.248590799530092 22.112077467322724 54-55 22.107014256514205 27.450334065887557 28.216576274352214 22.226075403246025 56-57 22.131718346211343 27.528376099838148 28.180838591477254 22.159066962473254 58-59 22.03470811636777 27.60219815427607 28.288786750260638 22.074306979095525 60-61 22.094839294861853 27.628016599226434 28.232027295670196 22.045116810241517 62-63 21.981135261169158 27.77515687265655 28.221245396333188 22.022462469841106 64-65 21.962412586369535 27.726498869343864 28.175978655831535 22.13510988845507 66-67 22.029356106968844 27.843111938553587 27.957243927182173 22.170288027295395 68-69 22.023512113157583 27.742895244736136 28.03656345038667 22.19702919171961 70-71 22.027888342045507 27.485257965913007 28.11445843447145 22.372395257570034 72-73 22.08599731518954 27.45854447464977 28.048376893835115 22.407081316325574 74-75 21.993968005479672 27.557812273871367 28.021612865884553 22.426606854764405 76-77 22.18584187436819 27.539058406329154 27.927032597006647 22.348067122296012 78-79 22.19455959565204 27.543010266736367 27.8605958250345 22.40183431257709 80-81 22.177111030146257 27.606939879896654 27.808961576422707 22.406987513534386 82-83 22.17640986037454 27.613174679413927 27.856644048394802 22.353771411816734 84-85 22.339505683918322 27.610000980636208 27.784938727000103 22.265554608445374 86-87 22.18966343363979 27.614359637131642 27.870275418257446 22.325701510971122 88-89 22.256559527113634 27.66437506042744 27.82654640664309 22.252519005815838 90-91 22.249362200309246 27.645224847286293 27.8734430787887 22.23196987361576 92-93 22.317285632401603 27.69056832668492 27.80805809099567 22.184087949917803 94-95 22.27935687428861 27.742632776262187 27.838394692508533 22.139615656940673 96-97 22.29088621795464 27.71078792187064 27.85705959008322 22.1412662700915 98-99 22.482254151773244 28.261112008051896 27.971728221009702 21.284905619165155 100-101 23.030495995506627 30.800223687892153 25.34279149893086 20.826488817670363 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2623.0 1 2424.5 2 2917.5 3 3840.5 4 4787.0 5 6977.5 6 9198.5 7 11909.0 8 15252.0 9 16892.5 10 16192.0 11 15021.5 12 15734.5 13 18966.5 14 26349.5 15 36043.5 16 43946.5 17 48471.0 18 48620.5 19 45464.0 20 41429.5 21 37836.0 22 37030.5 23 41486.0 24 51436.5 25 66571.5 26 86585.0 27 109018.5 28 133084.5 29 158594.5 30 183949.5 31 210666.5 32 238848.0 33 269250.0 34 299825.5 35 327022.5 36 356471.5 37 382729.5 38 401643.0 39 417162.0 40 433346.0 41 449111.0 42 458793.0 43 467254.5 44 475340.5 45 485081.0 46 489938.5 47 487429.0 48 484585.0 49 476991.5 50 465561.5 51 450905.0 52 430747.0 53 409753.5 54 387245.0 55 359533.5 56 328845.0 57 295910.5 58 262946.0 59 229922.5 60 193492.5 61 156619.0 62 122727.5 63 93601.5 64 70156.0 65 51807.5 66 37861.0 67 28080.5 68 20732.5 69 14727.0 70 10325.0 71 7118.5 72 4828.5 73 3163.0 74 2039.5 75 1267.5 76 801.0 77 485.0 78 301.5 79 186.5 80 123.5 81 91.5 82 64.0 83 43.0 84 26.5 85 17.5 86 12.0 87 7.5 88 5.0 89 2.5 90 2.5 91 3.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06078159188036206 6 0.0 7 0.0035789217472622105 8 0.0 9 0.0 10-11 0.0 12-13 8.582546156504103E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 7.726716676838746E-5 28-29 2.5763636327723417E-5 30-31 3.437960055459452E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.434667087546138E-6 46-47 0.0 48-49 0.0 50-51 0.0 52-53 7.726847792208694E-4 54-55 1.4261554423862873E-4 56-57 0.0029362427763333274 58-59 0.007381977659328307 60-61 0.0029043103066641513 62-63 0.005469896295502078 64-65 0.006404978586992042 66-67 0.004486512614008327 68-69 0.0034591444913804146 70-71 0.005116226138176367 72-73 0.003129144135508577 74-75 0.002946295916773432 76-77 0.0024838518143076413 78-79 5.595142602382209E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 8.463690924627553E-5 88-89 0.0 90-91 1.5668738235951856E-4 92-93 0.0 94-95 7.184349127535405E-5 96-97 5.599129536925671E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 527.0 22-23 1158.0 24-25 1325.0 26-27 2828.0 28-29 6342.0 30-31 19329.0 32-33 25651.0 34-35 35674.0 36-37 56663.0 38-39 63998.0 40-41 66506.0 42-43 75034.0 44-45 90219.0 46-47 91486.0 48-49 84837.0 50-51 77659.0 52-53 66391.0 54-55 71109.0 56-57 71931.0 58-59 82574.0 60-61 82657.0 62-63 80146.0 64-65 87733.0 66-67 94459.0 68-69 95310.0 70-71 99533.0 72-73 86532.0 74-75 86956.0 76-77 92824.0 78-79 96918.0 80-81 97158.0 82-83 92253.0 84-85 92058.0 86-87 95655.0 88-89 100259.0 90-91 103028.0 92-93 102293.0 94-95 111098.0 96-97 176110.0 98-99 988466.0 100-101 7798736.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.42884660252093 #Duplication Level Percentage of deduplicated Percentage of total 1 90.01686807400915 76.90037214333893 2 7.079757098889257 12.09630966368238 3 1.6655607925797 4.268608123693932 4 0.5508186974155115 1.882232240292405 5 0.2636515359987067 1.1261723312676273 6 0.1351353551705413 0.6926674516464815 7 0.07938739729516828 0.47473816499916205 8 0.053460575671739965 0.36536602546748287 9 0.03486720931671839 0.26807989285583317 >10 0.11620243138178524 1.539641203862961 >50 0.003403612646451012 0.19431672218895496 >100 8.040852854798384E-4 0.11005511259346029 >500 3.326019649806754E-5 0.016664229208909677 >1k 4.987414327780614E-5 0.064776694901492 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.7165092313008206E-5 2 0.0 4.2912730782520514E-5 0.0 8.582546156504103E-6 1.7165092313008206E-5 3 8.582546156504103E-6 4.2912730782520514E-5 0.0 8.582546156504103E-6 1.7165092313008206E-5 4 8.582546156504103E-6 9.440800772154513E-5 0.0 1.7165092313008206E-5 1.7165092313008206E-5 5 8.582546156504103E-6 9.440800772154513E-5 0.0 1.7165092313008206E-5 1.7165092313008206E-5 6 1.7165092313008206E-5 9.440800772154513E-5 0.0 1.7165092313008206E-5 4.2912730782520514E-5 7 1.7165092313008206E-5 9.440800772154513E-5 0.0 1.7165092313008206E-5 4.2912730782520514E-5 8 1.7165092313008206E-5 1.0299055387804923E-4 0.0 1.7165092313008206E-5 4.2912730782520514E-5 9 1.7165092313008206E-5 1.5448583081707385E-4 0.0 1.7165092313008206E-5 6.866036925203282E-5 10-11 2.574763846951231E-5 1.5448583081707385E-4 0.0 2.574763846951231E-5 6.866036925203282E-5 12-13 3.433018462601641E-5 1.5448583081707385E-4 0.0 3.003891154776436E-5 6.866036925203282E-5 14-15 4.2912730782520514E-5 1.9310728852134232E-4 0.0 3.433018462601641E-5 1.1586437311280538E-4 16-17 5.149527693902462E-5 1.9739856159959435E-4 0.0 3.433018462601641E-5 1.330294654258136E-4 18-19 5.149527693902462E-5 2.2314620006910665E-4 0.0 4.7204003860772566E-5 1.3732073850406565E-4 20-21 5.149527693902462E-5 2.4889383853861894E-4 0.0 5.149527693902462E-5 1.4590328466056976E-4 22-23 5.149527693902462E-5 2.703502039298792E-4 0.0 8.153418848678897E-5 1.8881601544309024E-4 24-25 5.149527693902462E-5 3.175542077906518E-4 0.0 1.1157310003455332E-4 2.1885492699085462E-4 26-27 5.149527693902462E-5 3.3471930010366E-4 0.0 1.5448583081707385E-4 2.3172874622561076E-4 28-29 5.149527693902462E-5 3.3471930010366E-4 0.0 4.548749462947174E-4 2.3172874622561076E-4 30-31 5.149527693902462E-5 4.033796693556928E-4 0.0 0.001682179046674804 2.4031129238211485E-4 32-33 5.149527693902462E-5 4.1196221551219694E-4 0.0 0.004694652747607744 2.703502039298792E-4 34-35 5.149527693902462E-5 4.6345749245122153E-4 0.0 0.008415186506452272 3.046803885558957E-4 36-37 5.149527693902462E-5 5.149527693902461E-4 0.0 0.014723357931482788 3.1755420779065177E-4 38-39 5.149527693902462E-5 5.407004078597584E-4 0.0 0.027391196058482843 3.3042802702540797E-4 40-41 5.149527693902462E-5 6.007782309552872E-4 0.0 0.06868611689050233 3.433018462601641E-4 42-43 5.149527693902462E-5 6.436909617378077E-4 0.0 0.0806373124134343 3.4759311933841615E-4 44-45 5.149527693902462E-5 7.46681515615857E-4 0.0 0.0973174908686 3.5617566549492026E-4 46-47 5.149527693902462E-5 8.196331579461418E-4 0.0 0.11589441202435315 3.8621457704268464E-4 48-49 5.149527693902462E-5 8.28215704102646E-4 0.0 0.13379760330682072 3.947971231991887E-4 50-51 5.149527693902462E-5 9.354975310589471E-4 0.0 0.1512502109160718 3.990883962774408E-4 52-53 5.149527693902462E-5 9.354975310589471E-4 0.0 0.18322877789520609 4.20544761668701E-4 54-55 5.149527693902462E-5 9.397888041371992E-4 0.0 0.26151447266175826 4.3770985398170923E-4 56-57 5.578655001727666E-5 9.526626233719554E-4 0.0 0.3476231582499639 4.4200112705996127E-4 58-59 6.0077823095528713E-5 9.526626233719554E-4 0.0 0.441911010325318 4.462924001382133E-4 60-61 6.0077823095528713E-5 9.612451695284595E-4 0.0 0.46682614181764936 4.548749462947174E-4 62-63 6.0077823095528713E-5 9.869928079979718E-4 0.0 0.48279396894182525 4.6345749245122153E-4 64-65 6.0077823095528713E-5 0.0011328960926585414 0.0 0.4939941916760631 4.6345749245122153E-4 66-67 6.0077823095528713E-5 0.0011371873657367935 0.0 0.5009117238782055 4.6345749245122153E-4 68-69 6.866036925203282E-5 0.0011543524580498016 0.0 0.5080824411919647 4.6345749245122153E-4 70-71 7.724291540853693E-5 0.00117151755036281 0.0 0.5140387282245784 4.934964039989859E-4 72-73 7.724291540853693E-5 0.001184391369597566 0.0 0.5185231085913519 5.321178617032544E-4 74-75 7.724291540853693E-5 0.0012144302811453304 0.0 0.5219432532347187 5.321178617032544E-4 76-77 7.724291540853693E-5 0.001270216831162607 0.0 0.5250372611241385 5.364091347815063E-4 78-79 7.724291540853693E-5 0.0012959644696321194 0.0 0.5278909577211761 5.449916809380105E-4 80-81 7.724291540853693E-5 0.0012959644696321194 0.0 0.5291912134638864 5.621567732510187E-4 82-83 7.724291540853693E-5 0.0013002557427103714 0.0 0.529761952783294 5.836131386422789E-4 84-85 7.724291540853693E-5 0.001330294654258136 0.0 0.5301567499064932 5.836131386422789E-4 86-87 7.724291540853693E-5 0.0013560422927276481 0.0 0.5302811968257625 6.007782309552872E-4 88-89 7.724291540853693E-5 0.001424702661979681 0.0 0.5303498571950145 6.093607771117912E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14840 0.0 50.59643 1 GTATCAA 27930 0.0 39.004116 1 TCAACGC 33265 0.0 32.357265 4 ATCAACG 33770 0.0 31.847689 3 CAACGCA 34390 0.0 31.235664 5 TATCAAC 34835 0.0 31.048449 2 AACGCAG 35520 0.0 30.270947 6 ACGCAGA 40905 0.0 26.27528 7 CGCAGAG 41355 0.0 25.957346 8 GTGGTAT 7465 0.0 22.791027 1 TGGTATC 7055 0.0 22.639067 2 GCAGAGT 48305 0.0 22.285522 9 GAGTACT 28420 0.0 20.90786 12-13 GTACATG 34290 0.0 20.150381 1 TACATGG 34635 0.0 19.636383 2 CAGAGTA 47170 0.0 19.162182 10-11 ACATGGG 34460 0.0 19.005604 3 AGAGTAC 43765 0.0 18.958378 10-11 GTACTTT 31885 0.0 18.574873 14-15 AGTACTT 31165 0.0 17.382349 12-13 >>END_MODULE